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Items: 35

1.

Parameter Estimation of Platelets Deposition: Approximate Bayesian Computation With High Performance Computing.

Dutta R, Chopard B, Lätt J, Dubois F, Zouaoui Boudjeltia K, Mira A.

Front Physiol. 2018 Aug 20;9:1128. doi: 10.3389/fphys.2018.01128. eCollection 2018.

2.

Impact of immigrants on a multi-agent economical system.

Kaufmann L, Razakanirina R, Groen D, Chopard B.

PLoS One. 2018 May 24;13(5):e0197509. doi: 10.1371/journal.pone.0197509. eCollection 2018.

3.

Model for pressure drop and flow deflection in the numerical simulation of stents in aneurysms.

Li S, Latt J, Chopard B.

Int J Numer Method Biomed Eng. 2018 Mar;34(3). doi: 10.1002/cnm.2949. Epub 2018 Jan 29.

PMID:
29197163
4.

Hermite regularization of the lattice Boltzmann method for open source computational aeroacoustics.

Brogi F, Malaspinas O, Chopard B, Bonadonna C.

J Acoust Soc Am. 2017 Oct;142(4):2332. doi: 10.1121/1.5006900.

PMID:
29092578
5.

A physical description of the adhesion and aggregation of platelets.

Chopard B, de Sousa DR, Lätt J, Mountrakis L, Dubois F, Yourassowsky C, Van Antwerpen P, Eker O, Vanhamme L, Perez-Morga D, Courbebaisse G, Lorenz E, Hoekstra AG, Boudjeltia KZ.

R Soc Open Sci. 2017 Apr 12;4(4):170219. doi: 10.1098/rsos.170219. eCollection 2017 Apr.

6.

Generalized three-dimensional lattice Boltzmann color-gradient method for immiscible two-phase pore-scale imbibition and drainage in porous media.

Leclaire S, Parmigiani A, Malaspinas O, Chopard B, Latt J.

Phys Rev E. 2017 Mar;95(3-1):033306. doi: 10.1103/PhysRevE.95.033306. Epub 2017 Mar 14.

PMID:
28415302
7.

Towards the patient-specific design of flow diverters made from helix-like wires: an optimization study.

Zhang M, Anzai H, Chopard B, Ohta M.

Biomed Eng Online. 2016 Dec 28;15(Suppl 2):159. doi: 10.1186/s12938-016-0257-z.

8.

Accelerating Bayesian inference for evolutionary biology models.

Meyer X, Chopard B, Salamin N.

Bioinformatics. 2017 Mar 1;33(5):669-676. doi: 10.1093/bioinformatics/btw712.

9.

Does the gravity orientation of saccular aneurysms influence hemodynamics? An experimental study with and without flow diverter stent.

Chodzyński KJ, Eker OF, Vanrossomme AE, de Sousa DR, Coussement G, Vanhamme L, Dubois F, Bonafé A, Chopard B, Courbebaisse G, Zouaoui Boudjeltia K.

J Biomech. 2016 Dec 8;49(16):3808-3814. doi: 10.1016/j.jbiomech.2016.10.007. Epub 2016 Oct 18.

PMID:
27810105
10.

The mechanical properties of a cell-based numerical model of epithelium.

Merzouki A, Malaspinas O, Chopard B.

Soft Matter. 2016 May 25;12(21):4745-54. doi: 10.1039/c6sm00106h.

PMID:
27139927
11.

A spatio-temporal model for spontaneous thrombus formation in cerebral aneurysms.

Malaspinas O, Turjman A, Ribeiro de Sousa D, Garcia-Cardena G, Raes M, Nguyen PT, Zhang Y, Courbebaisse G, Lelubre C, Zouaoui Boudjeltia K, Chopard B.

J Theor Biol. 2016 Apr 7;394:68-76. doi: 10.1016/j.jtbi.2015.12.022. Epub 2016 Jan 21.

PMID:
26802480
12.

Anatomy and Physiology of Multiscale Modeling and Simulation in Systems Medicine.

Mizeranschi A, Groen D, Borgdorff J, Hoekstra AG, Chopard B, Dubitzky W.

Methods Mol Biol. 2016;1386:375-404. doi: 10.1007/978-1-4939-3283-2_17. Review.

PMID:
26677192
13.

Quantitative analysis of platelets aggregates in 3D by digital holographic microscopy.

Boudejltia KZ, Ribeiro de Sousa D, Uzureau P, Yourassowsky C, Perez-Morga D, Courbebaisse G, Chopard B, Dubois F.

Biomed Opt Express. 2015 Aug 25;6(9):3556-63. doi: 10.1364/BOE.6.003556. eCollection 2015 Sep 1.

14.

Determination of a shear rate threshold for thrombus formation in intracranial aneurysms.

Ribeiro de Sousa D, Vallecilla C, Chodzynski K, Corredor Jerez R, Malaspinas O, Eker OF, Ouared R, Vanhamme L, Legrand A, Chopard B, Courbebaisse G, Zouaoui Boudjeltia K.

J Neurointerv Surg. 2016 Aug;8(8):853-8. doi: 10.1136/neurintsurg-2015-011737. Epub 2015 Jul 27.

PMID:
26215274
15.

Two waves of anisotropic growth generate enlarged follicles in the spiny mouse.

Montandon SA, Tzika AC, Martins AF, Chopard B, Milinkovitch MC.

Evodevo. 2014 Sep 25;5:33. doi: 10.1186/2041-9139-5-33. eCollection 2014.

16.

Performance of distributed multiscale simulations.

Borgdorff J, Ben Belgacem M, Bona-Casas C, Fazendeiro L, Groen D, Hoenen O, Mizeranschi A, Suter JL, Coster D, Coveney PV, Dubitzky W, Hoekstra AG, Strand P, Chopard B.

Philos Trans A Math Phys Eng Sci. 2014 Aug 6;372(2021). pii: 20130407. doi: 10.1098/rsta.2013.0407.

17.

Multiscale modelling and simulation: a position paper.

Hoekstra A, Chopard B, Coveney P.

Philos Trans A Math Phys Eng Sci. 2014 Aug 6;372(2021). pii: 20130377. doi: 10.1098/rsta.2013.0377.

PMID:
24982256
18.

A framework for multi-scale modelling.

Chopard B, Borgdorff J, Hoekstra AG.

Philos Trans A Math Phys Eng Sci. 2014 Aug 6;372(2021). pii: 20130378. doi: 10.1098/rsta.2013.0378.

19.

Multiscale modelling: approaches and challenges.

Karabasov S, Nerukh D, Hoekstra A, Chopard B, Coveney PV.

Philos Trans A Math Phys Eng Sci. 2014 Aug 6;372(2021). pii: 20130390. doi: 10.1098/rsta.2013.0390. No abstract available.

20.

Optimization of strut placement in flow diverter stents for four different aneurysm configurations.

Anzai H, Falcone JL, Chopard B, Hayase T, Ohta M.

J Biomech Eng. 2014 Jun;136(6):061006. doi: 10.1115/1.4027411.

PMID:
24718997
21.

Motifs tree: a new method for predicting post-translational modifications.

Charpilloz C, Veuthey AL, Chopard B, Falcone JL.

Bioinformatics. 2014 Jul 15;30(14):1974-82. doi: 10.1093/bioinformatics/btu165. Epub 2014 Mar 28.

PMID:
24681905
22.

Lattice-gas cellular automaton models for biology: from fluids to cells.

Chopard B, Ouared R, Deutsch A, Hatzikirou H, Wolf-Gladrow D.

Acta Biotheor. 2010 Dec;58(4):329-40. doi: 10.1007/s10441-010-9118-5. Epub 2010 Aug 14.

PMID:
20711745
23.

Towards a physical interpretation of the entropic lattice Boltzmann method.

Malaspinas O, Deville M, Chopard B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Dec;78(6 Pt 2):066705. Epub 2008 Dec 31.

PMID:
19256979
24.

Straight velocity boundaries in the lattice Boltzmann method.

Latt J, Chopard B, Malaspinas O, Deville M, Michler A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 May;77(5 Pt 2):056703. Epub 2008 May 13.

PMID:
18643191
25.

The application of multiscale modelling to the process of development and prevention of stenosis in a stented coronary artery.

Evans DJ, Lawford PV, Gunn J, Walker D, Hose DR, Smallwood RH, Chopard B, Krafczyk M, Bernsdorf J, Hoekstra A.

Philos Trans A Math Phys Eng Sci. 2008 Sep 28;366(1879):3343-60. doi: 10.1098/rsta.2008.0081.

PMID:
18603527
26.

Treatment of renal artery aneurysm with the multilayer stent.

Henry M, Polydorou A, Frid N, Gruffaz P, Cavet A, Henry I, Hugel M, Rüfenacht DA, Augsburger L, De Beule M, Verdonck P, Bonneau M, Kang C, Ouared R, Chopard B.

J Endovasc Ther. 2008 Apr;15(2):231-6. doi: 10.1583/07-2222.1.

PMID:
18426265
28.
29.

Two grid refinement methods in the lattice Boltzmann framework for reaction-diffusion processes in complex systems.

Alemani D, Chopard B, Galceran J, Buffle J.

Phys Chem Chem Phys. 2006 Sep 21;8(35):4119-31. Epub 2006 Jul 31.

PMID:
17028701
30.

Theory and applications of an alternative lattice Boltzmann grid refinement algorithm.

Dupuis A, Chopard B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Jun;67(6 Pt 2):066707. Epub 2003 Jun 20.

PMID:
16241380
31.

LBGK method coupled to time splitting technique for solving reaction-diffusion processes in complex systems.

Alemani D, Chopard B, Galceran J, Buffle J.

Phys Chem Chem Phys. 2005 Sep 21;7(18):3331-41. Epub 2005 Aug 8.

PMID:
16240048
32.

Characterization of flow reduction properties in an aneurysm due to a stent.

Hirabayashi M, Ohta M, Rüfenacht DA, Chopard B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug;68(2 Pt 1):021918. Epub 2003 Aug 26.

PMID:
14525017
33.

Reaction-diffusion cellular automata model for the formation of Leisegang patterns.

Chopard B, Luthi P, Droz M.

Phys Rev Lett. 1994 Feb 28;72(9):1384-1387. No abstract available.

PMID:
10056699
34.

Properties of the reaction front in a reversible A+B

Chopard B, Droz M, Karapiperis T, Rácz Z.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1993 Jan;47(1):R40-R43. No abstract available.

PMID:
9960074
35.

Role of fluctuations for inhomogeneous reaction-diffusion phenomena.

Cornell S, Droz M, Chopard B.

Phys Rev A. 1991 Oct 15;44(8):4826-4832. No abstract available.

PMID:
9906533

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