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Items: 41


An atlas of human metabolism.

Robinson JL, Kocabaş P, Wang H, Cholley PE, Cook D, Nilsson A, Anton M, Ferreira R, Domenzain I, Billa V, Limeta A, Hedin A, Gustafsson J, Kerkhoven EJ, Svensson LT, Palsson BO, Mardinoglu A, Hansson L, Uhlén M, Nielsen J.

Sci Signal. 2020 Mar 24;13(624). pii: eaaz1482. doi: 10.1126/scisignal.aaz1482.


Carbapenemase-producing Enterobacteriaceae circulating in the Reunion Island, a French territory in the Southwest Indian Ocean.

Miltgen G, Cholley P, Martak D, Thouverez M, Seraphin P, Leclaire A, Traversier N, Roquebert B, Jaffar-Bandjee MC, Lugagne N, Cimon CB, Ramiandrisoa M, Picot S, Lignereux A, Masson G, Allyn J, Allou N, Mavingui P, Belmonte O, Bertrand X, Hocquet D.

Antimicrob Resist Infect Control. 2020 Feb 19;9(1):36. doi: 10.1186/s13756-020-0703-3.


Spread of clonal linezolid-resistant Staphylococcus epidermidis in an intensive care unit associated with linezolid exposure.

Bouiller K, Ilic D, Wicky PH, Cholley P, Chirouze C, Bertrand X.

Eur J Clin Microbiol Infect Dis. 2020 Feb 14. doi: 10.1007/s10096-020-03842-7. [Epub ahead of print]


Occurrence of VIM-4 metallo-β-lactamase-producing Pseudomonas aeruginosa in an Algerian hospital.

Merradi M, Kassah-Laouar A, Ayachi A, Heleili N, Menasria T, Hocquet D, Cholley P, Sauget M.

J Infect Dev Ctries. 2019 Apr 30;13(4):284-290. doi: 10.3855/jidc.10679.


A comprehensive resource for retrieving, visualizing, and integrating functional genomics data.

Blum M, Cholley PE, Malysheva V, Nicaise S, Moehlin J, Gronemeyer H, Mendoza-Parra MA.

Life Sci Alliance. 2019 Dec 9;3(1). pii: e201900546. doi: 10.26508/lsa.201900546. Print 2020 Jan.


Characterization of Carbapenem-Resistant Enterobacteriaceae Clinical Isolates in Al Thawra University Hospital, Sana'a, Yemen.

Alsharapy SA, Gharout-Sait A, Muggeo A, Guillard T, Cholley P, Brasme L, Bertrand X, Moghram GS, Touati A, De Champs C.

Microb Drug Resist. 2020 Mar;26(3):211-217. doi: 10.1089/mdr.2018.0443. Epub 2019 Aug 9.


Increasing incidence of bloodstream infections due to Staphylococcus aureus clonal complex 398 in a French hospital between 2010 and 2017.

Sauget M, Bouiller K, Richard M, Chagrot J, Cholley P, Hocquet D, Bertrand X.

Eur J Clin Microbiol Infect Dis. 2019 Nov;38(11):2127-2132. doi: 10.1007/s10096-019-03653-5. Epub 2019 Aug 1.


Fourier-Transform InfraRed Spectroscopy Can Quickly Type Gram-Negative Bacilli Responsible for Hospital Outbreaks.

Martak D, Valot B, Sauget M, Cholley P, Thouverez M, Bertrand X, Hocquet D.

Front Microbiol. 2019 Jun 26;10:1440. doi: 10.3389/fmicb.2019.01440. eCollection 2019.


Molecular epidemiology of Pseudomonas aeruginosa isolated from infected ICU patients: a French multicenter 2012-2013 study.

Slekovec C, Robert J, van der Mee-Marquet N, Berthelot P, Rogues AM, Derouin V, Cholley P, Thouverez M, Hocquet D, Bertrand X.

Eur J Clin Microbiol Infect Dis. 2019 May;38(5):921-926. doi: 10.1007/s10096-019-03519-w. Epub 2019 Mar 2.


Modeling gene-regulatory networks to describe cell fate transitions and predict master regulators.

Cholley PE, Moehlin J, Rohmer A, Zilliox V, Nicaise S, Gronemeyer H, Mendoza-Parra MA.

NPJ Syst Biol Appl. 2018 Aug 2;4:29. doi: 10.1038/s41540-018-0066-z. eCollection 2018.


Outbreak of IMI-1 carbapenemase-producing colistin-resistant Enterobacter cloacae on the French island of Mayotte (Indian Ocean).

Miltgen G, Bonnin RA, Avril C, Benoit-Cattin T, Martak D, Leclaire A, Traversier N, Roquebert B, Jaffar-Bandjee MC, Lugagne N, Filleul L, Subiros M, de Montera AM, Cholley P, Thouverez M, Dortet L, Bertrand X, Naas T, Hocquet D, Belmonte O.

Int J Antimicrob Agents. 2018 Sep;52(3):416-420. doi: 10.1016/j.ijantimicag.2018.05.015. Epub 2018 May 26.


A Bundle of Measures to Control an Outbreak of Pseudomonas aeruginosa Associated With P-Trap Contamination.

Gbaguidi-Haore H, Varin A, Cholley P, Thouverez M, Hocquet D, Bertrand X.

Infect Control Hosp Epidemiol. 2018 Feb;39(2):164-169. doi: 10.1017/ice.2017.304.


Epimetheus - a multi-profile normalizer for epigenomic sequencing data.

Saleem MM, Mendoza-Parra MA, Cholley PE, Blum M, Gronemeyer H.

BMC Bioinformatics. 2017 May 12;18(1):259. doi: 10.1186/s12859-017-1655-3.


High prevalence and moderate diversity of Pseudomonas aeruginosa in the U-bends of high-risk units in hospital.

Varin A, Valot B, Cholley P, Morel C, Thouverez M, Hocquet D, Bertrand X.

Int J Hyg Environ Health. 2017 Jul;220(5):880-885. doi: 10.1016/j.ijheh.2017.04.003. Epub 2017 Apr 22.


Trends of extended-spectrum β-lactamase-producing Escherichia coli sequence type 131 and its H30 subclone in a French hospital over a 15-year period.

Sauget M, Cholley P, Vannier A, Thouverez M, Nicolas-Chanoine MH, Hocquet D, Bertrand X.

Int J Antimicrob Agents. 2016 Dec;48(6):744-747. doi: 10.1016/j.ijantimicag.2016.09.023. Epub 2016 Nov 4.


Antibody performance in ChIP-sequencing assays: From quality scores of public data sets to quantitative certification.

Mendoza-Parra MA, Saravaki V, Cholley PE, Blum M, Billoré B, Gronemeyer H.

Version 2. F1000Res. 2016 Jan 12 [revised 2016 Jan 1];5:54. doi: 10.12688/f1000research.7637.2. eCollection 2016.


LOGIQA: a database dedicated to long-range genome interactions quality assessment.

Mendoza-Parra MA, Blum M, Malysheva V, Cholley PE, Gronemeyer H.

BMC Genomics. 2016 May 16;17:355. doi: 10.1186/s12864-016-2642-1.


NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.

Mendoza-Parra MA, Saleem MA, Blum M, Cholley PE, Gronemeyer H.

Methods Mol Biol. 2016;1418:243-65. doi: 10.1007/978-1-4939-3578-9_13.


Clonal complex 398 methicillin-susceptible Staphylococcus aureus bloodstream infections are associated with high mortality.

Bouiller K, Gbaguidi-Haore H, Hocquet D, Cholley P, Bertrand X, Chirouze C.

Clin Microbiol Infect. 2016 May;22(5):451-5. doi: 10.1016/j.cmi.2016.01.018. Epub 2016 Feb 3.


Fluoroquinolone Resistance Mechanisms and population structure of Enterobacter cloacae non-susceptible to Ertapenem in North-Eastern France.

Guillard T, Cholley P, Limelette A, Hocquet D, Matton L, Guyeux C, Lebreil AL, Bajolet O, Brasme L, Madoux J, Vernet-Garnier V, Barbe C, Bertrand X, de Champs On Behalf Of CarbaFrEst Group C.

Front Microbiol. 2015 Oct 23;6:1186. doi: 10.3389/fmicb.2015.01186. eCollection 2015.


Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas.

Freel KC, Krueger MC, Farasin J, Brochier-Armanet C, Barbe V, Andrès J, Cholley PE, Dillies MA, Jagla B, Koechler S, Leva Y, Magdelenat G, Plewniak F, Proux C, Coppée JY, Bertin PN, Heipieper HJ, Arsène-Ploetze F.

PLoS One. 2015 Sep 30;10(9):e0139011. doi: 10.1371/journal.pone.0139011. eCollection 2015.


Comparison of double-locus sequence typing (DLST) and multilocus sequence typing (MLST) for the investigation of Pseudomonas aeruginosa populations.

Cholley P, Stojanov M, Hocquet D, Thouverez M, Bertrand X, Blanc DS.

Diagn Microbiol Infect Dis. 2015 Aug;82(4):274-7. doi: 10.1016/j.diagmicrobio.2015.03.027. Epub 2015 Apr 16.


Acquisition of carbapenem-resistant Gram-negative bacilli in intensive care unit: predictors and molecular epidemiology.

Marchenay P, Blasco G, Navellou JC, Leroy J, Cholley P, Talon D, Bertrand X, Gbaguidi-Haore H.

Med Mal Infect. 2015 Jan-Feb;45(1-2):34-40. doi: 10.1016/j.medmal.2014.12.003. Epub 2015 Jan 29.


Population structure and antimicrobial susceptibility of Pseudomonas aeruginosa from animal infections in France.

Haenni M, Hocquet D, Ponsin C, Cholley P, Guyeux C, Madec JY, Bertrand X.

BMC Vet Res. 2015 Jan 21;11:9. doi: 10.1186/s12917-015-0324-x.


Population structure of clinical Pseudomonas aeruginosa from West and Central African countries.

Cholley P, Ka R, Guyeux C, Thouverez M, Guessennd N, Ghebremedhin B, Frank T, Bertrand X, Hocquet D.

PLoS One. 2014 Sep 4;9(9):e107008. doi: 10.1371/journal.pone.0107008. eCollection 2014.


aac(6')-Ib-cr is the major plasmid-mediated quinolone resistance determinant in extended-spectrum β-lactamase-producing Escherichia coli in eastern France.

Guillard T, Bertrand X, de Champs C, Cholley P, Bajolet O, Gbaguidi-Haore H.

J Glob Antimicrob Resist. 2014 Jun;2(2):111-113. doi: 10.1016/j.jgar.2014.01.006. Epub 2014 Feb 21.


Wastewater treatment plants release large amounts of extended-spectrum β-lactamase-producing Escherichia coli into the environment.

Bréchet C, Plantin J, Sauget M, Thouverez M, Talon D, Cholley P, Guyeux C, Hocquet D, Bertrand X.

Clin Infect Dis. 2014 Jun;58(12):1658-65. doi: 10.1093/cid/ciu190. Epub 2014 May 1.


Hospital cross-transmission of extended-spectrum β-lactamase producing Escherichia coli and Klebsiella pneumoniae.

Cholley P, Thouverez M, Gbaguidi-Haore H, Sauget M, Slekovec C, Bertrand X, Talon D, Hocquet D.

Med Mal Infect. 2013 Aug;43(8):331-6. doi: 10.1016/j.medmal.2013.06.001. Epub 2013 Jul 19.


Lagooning of wastewaters favors dissemination of clinically relevant Pseudomonas aeruginosa.

Petit SM, Lavenir R, Colinon-Dupuich C, Boukerb AM, Cholley P, Bertrand X, Freney J, Doléans-Jordheim A, Nazaret S, Laurent F, Cournoyer B.

Res Microbiol. 2013 Oct;164(8):856-66. doi: 10.1016/j.resmic.2013.06.007. Epub 2013 Jun 18.


Alternatives to carbapenems in ESBL-producing Escherichia coli infections.

Fournier D, Chirouze C, Leroy J, Cholley P, Talon D, Plésiat P, Bertrand X.

Med Mal Infect. 2013 Feb;43(2):62-6. doi: 10.1016/j.medmal.2013.01.006. Epub 2013 Feb 19.


Tracking down antibiotic-resistant Pseudomonas aeruginosa isolates in a wastewater network.

Slekovec C, Plantin J, Cholley P, Thouverez M, Talon D, Bertrand X, Hocquet D.

PLoS One. 2012;7(12):e49300. doi: 10.1371/journal.pone.0049300. Epub 2012 Dec 19.


Clonal dissemination of Pseudomonas aeruginosa isolates producing extended-spectrum β-lactamase SHV-2a.

Jeannot K, Fournier D, Müller E, Cholley P, Plésiat P.

J Clin Microbiol. 2013 Feb;51(2):673-5. doi: 10.1128/JCM.02313-12. Epub 2012 Dec 12.


Spread of the bla(IMP-13) gene in French Pseudomonas aeruginosa through sequence types ST621, ST308 and ST111.

Fournier D, Jeannot K, Robert-Nicoud M, Muller E, Cholley P, van der Mee-Marquet N, Plésiat P.

Int J Antimicrob Agents. 2012 Dec;40(6):571-3. doi: 10.1016/j.ijantimicag.2012.08.006. Epub 2012 Oct 23. No abstract available.


IMP-29, a novel IMP-type metallo-β-lactamase in Pseudomonas aeruginosa.

Jeannot K, Poirel L, Robert-Nicoud M, Cholley P, Nordmann P, Plésiat P.

Antimicrob Agents Chemother. 2012 Apr;56(4):2187-90. doi: 10.1128/AAC.05838-11. Epub 2012 Jan 30.


Most multidrug-resistant Pseudomonas aeruginosa isolates from hospitals in eastern France belong to a few clonal types.

Cholley P, Thouverez M, Hocquet D, van der Mee-Marquet N, Talon D, Bertrand X.

J Clin Microbiol. 2011 Jul;49(7):2578-83. doi: 10.1128/JCM.00102-11. Epub 2011 May 18.


Multilevel modelling of the prevalence of hospitalized patients infected with Pseudomonas aeruginosa.

Gbaguidi-Haore H, Cholley P, Rabaud C, Bertrand X, Talon D.

Epidemiol Infect. 2011 Jun;139(6):886-94. doi: 10.1017/S0950268810001913. Epub 2010 Aug 16.


Molecular epidemiology of multidrug-resistant Pseudomonas aeruginosa in a French university hospital.

Cholley P, Gbaguidi-Haore H, Bertrand X, Thouverez M, Plésiat P, Hocquet D, Talon D.

J Hosp Infect. 2010 Dec;76(4):316-9. doi: 10.1016/j.jhin.2010.06.007. Epub 2010 Aug 9.


Hospital outbreak of Pseudomonas aeruginosa producing extended-spectrum oxacillinase OXA-19.

Cholley P, Hocquet D, Alauzet C, Cravoisy-Popovic A, Talon D, Aissa N, Plésiat P, Bertrand X.

J Med Microbiol. 2010 Jul;59(Pt 7):866-9. doi: 10.1099/jmm.0.019364-0. Epub 2010 Mar 18. No abstract available.


Detection of a new extended-spectrum oxacillinase in Pseudomonas aeruginosa.

Fournier D, Hocquet D, Dehecq B, Cholley P, Plésiat P.

J Antimicrob Chemother. 2010 Feb;65(2):364-5. doi: 10.1093/jac/dkp438. Epub 2009 Dec 11. No abstract available.


Usefulness of antimicrobial resistance pattern for detecting PVL- or TSST-1-producing meticillin-resistant Staphylococcus aureus in a French university hospital.

Gbaguidi-Haore H, Thouverez M, Couetdic G, Cholley P, Talon D, Bertrand X.

J Med Microbiol. 2009 Oct;58(Pt 10):1337-1340. doi: 10.1099/jmm.0.010116-0. Epub 2009 Jun 25.


The role of water fittings in intensive care rooms as reservoirs for the colonization of patients with Pseudomonas aeruginosa.

Cholley P, Thouverez M, Floret N, Bertrand X, Talon D.

Intensive Care Med. 2008 Aug;34(8):1428-33. doi: 10.1007/s00134-008-1110-z. Epub 2008 Apr 19.

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