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Items: 15

1.

An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells.

Zhang Z, Chng KR, Lingadahalli S, Chen Z, Liu MH, Do HH, Cai S, Rinaldi N, Poh HM, Li G, Sung YY, Heng CL, Core LJ, Tan SK, Ruan X, Lis JT, Kellis M, Ruan Y, Sung WK, Cheung E.

Genome Res. 2019 Feb;29(2):223-235. doi: 10.1101/gr.230243.117. Epub 2019 Jan 3.

PMID:
30606742
2.

The liver-gut microbiota axis modulates hepatotoxicity of tacrine in the rat.

Yip LY, Aw CC, Lee SH, Hong YS, Ku HC, Xu WH, Chan JMX, Cheong EJY, Chng KR, Ng AHQ, Nagarajan N, Mahendran R, Lee YK, Browne ER, Chan ECY.

Hepatology. 2018 Jan;67(1):282-295. doi: 10.1002/hep.29327. Epub 2017 Nov 19.

PMID:
28646502
3.

Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare.

Chng KR, Tay AS, Li C, Ng AH, Wang J, Suri BK, Matta SA, McGovern N, Janela B, Wong XF, Sio YY, Au BV, Wilm A, De Sessions PF, Lim TC, Tang MB, Ginhoux F, Connolly JE, Lane EB, Chew FT, Common JE, Nagarajan N.

Nat Microbiol. 2016 Jul 11;1(9):16106. doi: 10.1038/nmicrobiol.2016.106.

PMID:
27562258
4.

INC-Seq: accurate single molecule reads using nanopore sequencing.

Li C, Chng KR, Boey EJ, Ng AH, Wilm A, Nagarajan N.

Gigascience. 2016 Aug 2;5(1):34. doi: 10.1186/s13742-016-0140-7.

5.

Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma.

Chng KR, Chan SH, Ng AHQ, Li C, Jusakul A, Bertrand D, Wilm A, Choo SP, Tan DMY, Lim KH, Soetinko R, Ong CK, Duda DG, Dima S, Popescu I, Wongkham C, Feng Z, Yeoh KG, Teh BT, Yongvanit P, Wongkham S, Bhudhisawasdi V, Khuntikeo N, Tan P, Pairojkul C, Ngeow J, Nagarajan N.

EBioMedicine. 2016 Jun;8:195-202. doi: 10.1016/j.ebiom.2016.04.034. Epub 2016 May 6.

6.

@MInter: automated text-mining of microbial interactions.

Lim KM, Li C, Chng KR, Nagarajan N.

Bioinformatics. 2016 Oct 1;32(19):2981-7. doi: 10.1093/bioinformatics/btw357. Epub 2016 Jun 16.

PMID:
27312413
7.

Predicting microbial interactions through computational approaches.

Li C, Lim KM, Chng KR, Nagarajan N.

Methods. 2016 Jun 1;102:12-9. doi: 10.1016/j.ymeth.2016.02.019. Epub 2016 Mar 26.

PMID:
27025964
8.

Genomic Characterization of Dehalococcoides mccartyi Strain JNA That Reductively Dechlorinates Tetrachloroethene and Polychlorinated Biphenyls.

Wang S, Chng KR, Chen C, Bedard DL, He J.

Environ Sci Technol. 2015 Dec 15;49(24):14319-25. doi: 10.1021/acs.est.5b01979. Epub 2015 Nov 24.

PMID:
26551549
9.

Patient-specific driver gene prediction and risk assessment through integrated network analysis of cancer omics profiles.

Bertrand D, Chng KR, Sherbaf FG, Kiesel A, Chia BK, Sia YY, Huang SK, Hoon DS, Liu ET, Hillmer A, Nagarajan N.

Nucleic Acids Res. 2015 Apr 20;43(7):e44. doi: 10.1093/nar/gku1393. Epub 2015 Jan 8.

10.

Draft Genome Sequence of Polychlorinated Biphenyl-Dechlorinating Dehalococcoides mccartyi Strain SG1, Which Carries a Circular Putative Plasmid.

Wang S, Chng KR, Wu C, Wilm A, Nagarajan N, He J.

Genome Announc. 2014 Oct 2;2(5). pii: e00901-14. doi: 10.1128/genomeA.00901-14.

11.

Genomic characterization of three unique Dehalococcoides that respire on persistent polychlorinated biphenyls.

Wang S, Chng KR, Wilm A, Zhao S, Yang KL, Nagarajan N, He J.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12103-8. doi: 10.1073/pnas.1404845111. Epub 2014 Jul 15.

12.

Sequencing the transcriptional network of androgen receptor in prostate cancer.

Chng KR, Cheung E.

Cancer Lett. 2013 Nov 1;340(2):254-60. doi: 10.1016/j.canlet.2012.11.009. Epub 2012 Nov 27. Review.

PMID:
23196061
13.

A transcriptional repressor co-regulatory network governing androgen response in prostate cancers.

Chng KR, Chang CW, Tan SK, Yang C, Hong SZ, Sng NY, Cheung E.

EMBO J. 2012 Jun 13;31(12):2810-23. doi: 10.1038/emboj.2012.112. Epub 2012 Apr 24.

14.

Integration of regulatory networks by NKX3-1 promotes androgen-dependent prostate cancer survival.

Tan PY, Chang CW, Chng KR, Wansa KD, Sung WK, Cheung E.

Mol Cell Biol. 2012 Jan;32(2):399-414. doi: 10.1128/MCB.05958-11. Epub 2011 Nov 14.

15.

AP-2γ regulates oestrogen receptor-mediated long-range chromatin interaction and gene transcription.

Tan SK, Lin ZH, Chang CW, Varang V, Chng KR, Pan YF, Yong EL, Sung WK, Cheung E.

EMBO J. 2011 May 13;30(13):2569-81. doi: 10.1038/emboj.2011.151. Erratum in: EMBO J. 2011;30(13):2750. Sung, Win King [corrected to Sung, Wing Kin].

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