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Items: 1 to 50 of 52

1.

Why Do Similarity Matching Objectives Lead to Hebbian/Anti-Hebbian Networks?

Pehlevan C, Sengupta AM, Chklovskii DB.

Neural Comput. 2018 Jan;30(1):84-124. doi: 10.1162/neco_a_01018. Epub 2017 Sep 28.

PMID:
28957017
2.

Blind Nonnegative Source Separation Using Biological Neural Networks.

Pehlevan C, Mohan S, Chklovskii DB.

Neural Comput. 2017 Nov;29(11):2925-2954. doi: 10.1162/neco_a_01007. Epub 2017 Aug 4.

PMID:
28777718
3.

The comprehensive connectome of a neural substrate for 'ON' motion detection in Drosophila.

Takemura SY, Nern A, Chklovskii DB, Scheffer LK, Rubin GM, Meinertzhagen IA.

Elife. 2017 Apr 22;6. pii: e24394. doi: 10.7554/eLife.24394.

4.

Neocortex: a lean mean memory storage machine.

Mizusaki BEP, Stepanyants A, Chklovskii DB, Sjöström PJ.

Nat Neurosci. 2016 Apr 26;19(5):643-644. doi: 10.1038/nn.4292. Review. No abstract available.

5.

Synaptic circuits and their variations within different columns in the visual system of Drosophila.

Takemura SY, Xu CS, Lu Z, Rivlin PK, Parag T, Olbris DJ, Plaza S, Zhao T, Katz WT, Umayam L, Weaver C, Hess HF, Horne JA, Nunez-Iglesias J, Aniceto R, Chang LA, Lauchie S, Nasca A, Ogundeyi O, Sigmund C, Takemura S, Tran J, Langille C, Le Lacheur K, McLin S, Shinomiya A, Chklovskii DB, Meinertzhagen IA, Scheffer LK.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13711-6. doi: 10.1073/pnas.1509820112. Epub 2015 Oct 19.

6.

Automatic Adaptation to Fast Input Changes in a Time-Invariant Neural Circuit.

Bharioke A, Chklovskii DB.

PLoS Comput Biol. 2015 Aug 6;11(8):e1004315. doi: 10.1371/journal.pcbi.1004315. eCollection 2015 Aug.

7.

A Hebbian/Anti-Hebbian Neural Network for Linear Subspace Learning: A Derivation from Multidimensional Scaling of Streaming Data.

Pehlevan C, Hu T, Chklovskii DB.

Neural Comput. 2015 Jul;27(7):1461-95. doi: 10.1162/NECO_a_00745. Epub 2015 May 14.

PMID:
25973548
8.

A consistent muscle activation strategy underlies crawling and swimming in Caenorhabditis elegans.

Butler VJ, Branicky R, Yemini E, Liewald JF, Gottschalk A, Kerr RA, Chklovskii DB, Schafer WR.

J R Soc Interface. 2015 Jan 6;12(102):20140963.

9.

Toward large-scale connectome reconstructions.

Plaza SM, Scheffer LK, Chklovskii DB.

Curr Opin Neurobiol. 2014 Apr;25:201-10. doi: 10.1016/j.conb.2014.01.019. Epub 2014 Mar 2. Review.

PMID:
24598270
10.

Wiring economy can account for cell body placement across species and brain areas.

Rivera-Alba M, Peng H, de Polavieja GG, Chklovskii DB.

Curr Biol. 2014 Feb 3;24(3):R109-10. doi: 10.1016/j.cub.2013.12.012.

11.

Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.

Rah JC, Bas E, Colonell J, Mishchenko Y, Karsh B, Fetter RD, Myers EW, Chklovskii DB, Svoboda K, Harris TD, Isaac JT.

Front Neural Circuits. 2013 Nov 12;7:177. doi: 10.3389/fncir.2013.00177. eCollection 2013.

12.

Machine learning of hierarchical clustering to segment 2D and 3D images.

Nunez-Iglesias J, Kennedy R, Parag T, Shi J, Chklovskii DB.

PLoS One. 2013 Aug 20;8(8):e71715. doi: 10.1371/journal.pone.0071715. eCollection 2013.

13.

Vertebrate versus invertebrate neural circuits.

Katz P, Grillner S, Wilson R, Borst A, Greenspan R, Buzsáki G, Martin K, Marder E, Kristan W, Friedrich R, Chklovskii D.

Curr Biol. 2013 Jun 17;23(12):R504-6. No abstract available.

14.

Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations Over Learned Dictionaries.

Tao Hu, Nunez-Iglesias J, Vitaladevuni S, Scheffer L, Shan Xu, Bolorizadeh M, Hess H, Fetter R, Chklovskii DB.

IEEE Trans Med Imaging. 2013 Dec;32(12):2179-88. doi: 10.1109/TMI.2013.2276018. Epub 2013 Aug 2.

PMID:
23925366
15.

A visual motion detection circuit suggested by Drosophila connectomics.

Takemura SY, Bharioke A, Lu Z, Nern A, Vitaladevuni S, Rivlin PK, Katz WT, Olbris DJ, Plaza SM, Winston P, Zhao T, Horne JA, Fetter RD, Takemura S, Blazek K, Chang LA, Ogundeyi O, Saunders MA, Shapiro V, Sigmund C, Rubin GM, Scheffer LK, Meinertzhagen IA, Chklovskii DB.

Nature. 2013 Aug 8;500(7461):175-81. doi: 10.1038/nature12450.

16.

Proprioceptive coupling within motor neurons drives C. elegans forward locomotion.

Wen Q, Po MD, Hulme E, Chen S, Liu X, Kwok SW, Gershow M, Leifer AM, Butler V, Fang-Yen C, Kawano T, Schafer WR, Whitesides G, Wyart M, Chklovskii DB, Zhen M, Samuel AD.

Neuron. 2012 Nov 21;76(4):750-61. doi: 10.1016/j.neuron.2012.08.039.

17.

Neuronal circuits underlying persistent representations despite time varying activity.

Druckmann S, Chklovskii DB.

Curr Biol. 2012 Nov 20;22(22):2095-103. doi: 10.1016/j.cub.2012.08.058. Epub 2012 Oct 18.

18.

A network of spiking neurons for computing sparse representations in an energy-efficient way.

Hu T, Genkin A, Chklovskii DB.

Neural Comput. 2012 Nov;24(11):2852-72. doi: 10.1162/NECO_a_00353. Epub 2012 Aug 24.

19.

Neuroscience. The mind of a male?

Chklovskii DB, Bargmann CI.

Science. 2012 Jul 27;337(6093):416-7. doi: 10.1126/science.1225853. No abstract available.

PMID:
22837511
20.

Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain.

Rivera-Alba M, Vitaladevuni SN, Mishchenko Y, Lu Z, Takemura SY, Scheffer L, Meinertzhagen IA, Chklovskii DB, de Polavieja GG.

Curr Biol. 2011 Dec 6;21(23):2000-5. doi: 10.1016/j.cub.2011.10.022. Epub 2011 Nov 23. Erratum in: Curr Biol. 2012 Jan 24;22(2):172. Mischenko, Yuriy [corrected to Mishchenko, Yuriy].

21.

Large-scale automated histology in the pursuit of connectomes.

Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, Smith SJ, Takemura S, Tsai PS, Sakmann B.

J Neurosci. 2011 Nov 9;31(45):16125-38. doi: 10.1523/JNEUROSCI.4077-11.2011. Review.

22.

Structural properties of the Caenorhabditis elegans neuronal network.

Varshney LR, Chen BL, Paniagua E, Hall DH, Chklovskii DB.

PLoS Comput Biol. 2011 Feb 3;7(2):e1001066. doi: 10.1371/journal.pcbi.1001066.

23.

Ultrastructural analysis of hippocampal neuropil from the connectomics perspective.

Mishchenko Y, Hu T, Spacek J, Mendenhall J, Harris KM, Chklovskii DB.

Neuron. 2010 Sep 23;67(6):1009-20. doi: 10.1016/j.neuron.2010.08.014.

24.

Semi-automated reconstruction of neural circuits using electron microscopy.

Chklovskii DB, Vitaladevuni S, Scheffer LK.

Curr Opin Neurobiol. 2010 Oct;20(5):667-75. doi: 10.1016/j.conb.2010.08.002. Epub 2010 Sep 15. Review.

PMID:
20833533
25.

Maximization of the connectivity repertoire as a statistical principle governing the shapes of dendritic arbors.

Wen Q, Stepanyants A, Elston GN, Grosberg AY, Chklovskii DB.

Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12536-41. doi: 10.1073/pnas.0901530106. Epub 2009 Jul 21.

26.

A cost-benefit analysis of neuronal morphology.

Wen Q, Chklovskii DB.

J Neurophysiol. 2008 May;99(5):2320-8. doi: 10.1152/jn.00280.2007. Epub 2008 Feb 27.

27.

Local potential connectivity in cat primary visual cortex.

Stepanyants A, Hirsch JA, Martinez LM, Kisvárday ZF, Ferecskó AS, Chklovskii DB.

Cereb Cortex. 2008 Jan;18(1):13-28. Epub 2007 Apr 9.

28.

Optimal information storage in noisy synapses under resource constraints.

Varshney LR, Sjöström PJ, Chklovskii DB.

Neuron. 2006 Nov 9;52(3):409-23.

29.

Wiring optimization can relate neuronal structure and function.

Chen BL, Hall DH, Chklovskii DB.

Proc Natl Acad Sci U S A. 2006 Mar 21;103(12):4723-8. Epub 2006 Mar 14.

30.

Segregation of the brain into gray and white matter: a design minimizing conduction delays.

Wen Q, Chklovskii DB.

PLoS Comput Biol. 2005 Dec;1(7):e78. Epub 2005 Dec 30.

31.

Neurogeometry and potential synaptic connectivity.

Stepanyants A, Chklovskii DB.

Trends Neurosci. 2005 Jul;28(7):387-94. Review.

PMID:
15935485
32.

Geometric and functional organization of cortical circuits.

Shepherd GM, Stepanyants A, Bureau I, Chklovskii D, Svoboda K.

Nat Neurosci. 2005 Jun;8(6):782-90. Epub 2005 May 8.

PMID:
15880111
33.

Highly nonrandom features of synaptic connectivity in local cortical circuits.

Song S, Sjöström PJ, Reigl M, Nelson S, Chklovskii DB.

PLoS Biol. 2005 Mar;3(3):e68. Epub 2005 Mar 1. Erratum in: PLoS Biol. 2005 Oct;3(10):e350.

34.

Search for computational modules in the C. elegans brain.

Reigl M, Alon U, Chklovskii DB.

BMC Biol. 2004 Dec 2;2:25.

35.

Cortical rewiring and information storage.

Chklovskii DB, Mel BW, Svoboda K.

Nature. 2004 Oct 14;431(7010):782-8. Review.

PMID:
15483599
36.
37.

Exact solution for the optimal neuronal layout problem.

Chklovskii DB.

Neural Comput. 2004 Oct;16(10):2067-78.

PMID:
15333207
38.

Class-specific features of neuronal wiring.

Stepanyants A, Tamás G, Chklovskii DB.

Neuron. 2004 Jul 22;43(2):251-9.

39.

Maps in the brain: what can we learn from them?

Chklovskii DB, Koulakov AA.

Annu Rev Neurosci. 2004;27:369-92. Review.

PMID:
15217337
40.

Power-law for axon diameters at branch point.

Chklovskii DB, Stepanyants A.

BMC Neurosci. 2003 Aug 28;4:18.

41.

Network motifs: simple building blocks of complex networks.

Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U.

Science. 2002 Oct 25;298(5594):824-7.

42.

Wiring optimization in cortical circuits.

Chklovskii DB, Schikorski T, Stevens CF.

Neuron. 2002 Apr 25;34(3):341-7.

43.

Geometry and structural plasticity of synaptic connectivity.

Stepanyants A, Hof PR, Chklovskii DB.

Neuron. 2002 Apr 11;34(2):275-88.

44.
46.

Optimal sizes of dendritic and axonal arbors in a topographic projection.

Chklovskii DB.

J Neurophysiol. 2000 Apr;83(4):2113-9.

47.

Structure of fractional edge states: A composite-fermion approach.

Chklovskii DB.

Phys Rev B Condens Matter. 1995 Apr 15;51(15):9895-9902. No abstract available.

PMID:
9977663
48.

Transport properties between quantum Hall plateaus.

Chklovskii DB, Lee PA.

Phys Rev B Condens Matter. 1993 Dec 15;48(24):18060-18078. No abstract available.

PMID:
10008445
49.

Ballistic conductance of interacting electrons in the quantum Hall regime.

Chklovskii DB, Matveev KA, Shklovskii BI.

Phys Rev B Condens Matter. 1993 May 15;47(19):12605-12617. No abstract available.

PMID:
10005455
50.

Erratum: Electrostatics of edge channels

Chklovskii DB, Shklovskii BI, Glazman LI.

Phys Rev B Condens Matter. 1992 Dec 15;46(23):15606. No abstract available.

PMID:
10021571

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