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Items: 49

1.

Author Correction: Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.

Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Peltier A, Janoueix-Lerosey I, Bartenhagen C, Fischer M, Roberts S, D'Haene N, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P.

Sci Rep. 2019 Jul 17;9(1):10536. doi: 10.1038/s41598-019-46785-6.

2.

Structural Transformations of Amino-Acid-Based Polymers: Syntheses and Structural Characterization.

Tseng TW, Luo TT, Chiu HS, Wang CC, Lee GH, Sheu HS, Lu KL.

Polymers (Basel). 2018 Mar 23;10(4). pii: E360. doi: 10.3390/polym10040360.

3.

Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes.

Rombaut D, Chiu HS, Decaesteker B, Everaert C, Yigit N, Peltier A, Janoueix-Lerosey I, Bartenhagen C, Fischer M, Roberts S, D'Haene N, De Preter K, Speleman F, Denecker G, Sumazin P, Vandesompele J, Lefever S, Mestdagh P.

Sci Rep. 2019 Apr 5;9(1):5685. doi: 10.1038/s41598-019-42107-y. Erratum in: Sci Rep. 2019 Jul 17;9(1):10536.

4.

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation.

Friedman CE, Nguyen Q, Lukowski SW, Helfer A, Chiu HS, Miklas J, Levy S, Suo S, Han JJ, Osteil P, Peng G, Jing N, Baillie GJ, Senabouth A, Christ AN, Bruxner TJ, Murry CE, Wong ES, Ding J, Wang Y, Hudson J, Ruohola-Baker H, Bar-Joseph Z, Tam PPL, Powell JE, Palpant NJ.

Cell Stem Cell. 2018 Oct 4;23(4):586-598.e8. doi: 10.1016/j.stem.2018.09.009.

PMID:
30290179
5.

Artificial-Intelligence-Based Prediction of Clinical Events among Hemodialysis Patients Using Non-Contact Sensor Data.

Thakur SS, Abdul SS, Chiu HS, Roy RB, Huang PY, Malwade S, Nursetyo AA, Li YJ.

Sensors (Basel). 2018 Aug 27;18(9). pii: E2833. doi: 10.3390/s18092833.

6.

LIN28 Selectively Modulates a Subclass of Let-7 MicroRNAs.

Ustianenko D, Chiu HS, Treiber T, Weyn-Vanhentenryck SM, Treiber N, Meister G, Sumazin P, Zhang C.

Mol Cell. 2018 Jul 19;71(2):271-283.e5. doi: 10.1016/j.molcel.2018.06.029.

7.

Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations.

Nguyen QH, Lukowski SW, Chiu HS, Senabouth A, Bruxner TJC, Christ AN, Palpant NJ, Powell JE.

Genome Res. 2018 Jul;28(7):1053-1066. doi: 10.1101/gr.223925.117. Epub 2018 May 11.

8.

The number of titrated microRNA species dictates ceRNA regulation.

Chiu HS, Martínez MR, Komissarova EV, Llobet-Navas D, Bansal M, Paull EO, Silva J, Yang X, Sumazin P, Califano A.

Nucleic Acids Res. 2018 May 18;46(9):4354-4369. doi: 10.1093/nar/gky286.

9.

A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers.

Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N; Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R.

Cancer Cell. 2018 Apr 9;33(4):690-705.e9. doi: 10.1016/j.ccell.2018.03.014. Epub 2018 Apr 2.

10.

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context.

Chiu HS, Somvanshi S, Patel E, Chen TW, Singh VP, Zorman B, Patil SL, Pan Y, Chatterjee SS; Cancer Genome Atlas Research Network, Sood AK, Gunaratne PH, Sumazin P.

Cell Rep. 2018 Apr 3;23(1):297-312.e12. doi: 10.1016/j.celrep.2018.03.064.

11.

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.

Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK; Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C.

Cell Rep. 2018 Apr 3;23(1):194-212.e6. doi: 10.1016/j.celrep.2018.03.063.

12.

Subtle modifications to oxytocin produce ligands that retain potency and improved selectivity across species.

Muttenthaler M, Andersson Å, Vetter I, Menon R, Busnelli M, Ragnarsson L, Bergmayr C, Arrowsmith S, Deuis JR, Chiu HS, Palpant NJ, O'Brien M, Smith TJ, Wray S, Neumann ID, Gruber CW, Lewis RJ, Alewood PF.

Sci Signal. 2017 Dec 5;10(508). pii: eaan3398. doi: 10.1126/scisignal.aan3398.

13.

Four Mixed-Ligand Zn(II) Three-Dimensional Metal-Organic Frameworks: Synthesis, Structural Diversity, and Photoluminescent Property.

Wang CC, Ke SY, Cheng CW, Wang YW, Chiu HS, Ko YC, Sun NK, Ho ML, Chang CK, Chuang YC, Lee GH.

Polymers (Basel). 2017 Nov 25;9(12). pii: E644. doi: 10.3390/polym9120644.

14.

High-throughput validation of ceRNA regulatory networks.

Chiu HS, Martínez MR, Bansal M, Subramanian A, Golub TR, Yang X, Sumazin P, Califano A.

BMC Genomics. 2017 May 30;18(1):418. doi: 10.1186/s12864-017-3790-7.

15.

Self-organisation after embryonic kidney dissociation is driven via selective adhesion of ureteric epithelial cells.

Lefevre JG, Chiu HS, Combes AN, Vanslambrouck JM, Ju A, Hamilton NA, Little MH.

Development. 2017 Mar 15;144(6):1087-1096. doi: 10.1242/dev.140228. Epub 2017 Feb 7.

16.

CRIM1 is necessary for coronary vascular endothelial cell development and homeostasis.

Iyer S, Chhabra Y, Harvey TJ, Wang R, Chiu HS, Smith AG, Thomas WG, Pennisi DJ, Piper M.

J Mol Histol. 2017 Feb;48(1):53-61. doi: 10.1007/s10735-016-9702-3. Epub 2016 Nov 1.

PMID:
27803996
17.

Generation of kidney organoids from human pluripotent stem cells.

Takasato M, Er PX, Chiu HS, Little MH.

Nat Protoc. 2016 Sep;11(9):1681-92. doi: 10.1038/nprot.2016.098. Epub 2016 Aug 18.

18.

Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis.

Takasato M, Er PX, Chiu HS, Maier B, Baillie GJ, Ferguson C, Parton RG, Wolvetang EJ, Roost MS, Lopes SM, Little MH.

Nature. 2016 Aug 11;536(7615):238. doi: 10.1038/nature17982. Epub 2016 Apr 27. No abstract available.

PMID:
27120161
19.

Crim1 has cell-autonomous and paracrine roles during embryonic heart development.

Iyer S, Chou FY, Wang R, Chiu HS, Raju VK, Little MH, Thomas WG, Piper M, Pennisi DJ.

Sci Rep. 2016 Jan 29;6:19832. doi: 10.1038/srep19832.

20.

Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis.

Takasato M, Er PX, Chiu HS, Maier B, Baillie GJ, Ferguson C, Parton RG, Wolvetang EJ, Roost MS, Chuva de Sousa Lopes SM, Little MH.

Nature. 2015 Oct 22;526(7574):564-8. doi: 10.1038/nature15695. Epub 2015 Oct 7. Erratum in: Nature. 2016 Aug 11;536(7615):238.

PMID:
26444236
21.

Cupid: simultaneous reconstruction of microRNA-target and ceRNA networks.

Chiu HS, Llobet-Navas D, Yang X, Chung WJ, Ambesi-Impiombato A, Iyer A, Kim HR, Seviour EG, Luo Z, Sehgal V, Moss T, Lu Y, Ram P, Silva J, Mills GB, Califano A, Sumazin P.

Genome Res. 2015 Feb;25(2):257-67. doi: 10.1101/gr.178194.114. Epub 2014 Nov 5.

22.

Proficiency testing criteria for clearance level in solid waste gamma measurement in Taiwan.

Chen CL, Wang JJ, Chiu HS.

Appl Radiat Isot. 2013 Nov;81:32-5. doi: 10.1016/j.apradiso.2013.03.036. Epub 2013 Mar 19.

PMID:
23591296
23.

Radioactivity inspection of Taiwan for food products imported from Japan after the Fukushima nuclear accident.

Chiu HS, Huang PJ, Wuu JL, Wang JJ.

Appl Radiat Isot. 2013 Nov;81:356-7. doi: 10.1016/j.apradiso.2013.03.009. Epub 2013 Mar 16.

PMID:
23583088
24.

A genome-wide screen to identify transcription factors expressed in pelvic Ganglia of the lower urinary tract.

Wiese CB, Ireland S, Fleming NL, Yu J, Valerius MT, Georgas K, Chiu HS, Brennan J, Armstrong J, Little MH, McMahon AP, Southard-Smith EM.

Front Neurosci. 2012 Sep 12;6:130. doi: 10.3389/fnins.2012.00130. eCollection 2012.

25.

Use of in situ hybridization to examine gene expression in the embryonic, neonatal, and adult urogenital system.

Rumballe BA, Chiu HS, Georgas KM, Little MH.

Methods Mol Biol. 2012;886:223-39. doi: 10.1007/978-1-61779-851-1_20.

PMID:
22639265
26.

Production of a mouse line with a conditional Crim1 mutant allele.

Chiu HS, York JP, Wilkinson L, Zhang P, Little MH, Pennisi DJ.

Genesis. 2012 Sep;50(9):711-6. doi: 10.1002/dvg.22032. Epub 2012 May 19.

27.

A portable electrochemical sensor for caffeine and (-)epigallocatechin gallate based on molecularly imprinted poly(ethylene-co-vinyl alcohol) recognition element.

Chung IC, Chang CC, Chiu HS, Jiang SF, Lee MH, Chung CL, Liu BD, Huang CY, Lin HY.

J Nanosci Nanotechnol. 2011 Dec;11(12):10633-8.

PMID:
22408963
28.

The performance evaluation of a movable gamma-ray counting system for radwaste measurement.

Huang PJ, Chiu HS, Yeh CH, Wang JJ, Yuan MC.

Appl Radiat Isot. 2012 Sep;70(9):1977-80. doi: 10.1016/j.apradiso.2012.02.061. Epub 2012 Mar 3.

PMID:
22406216
29.

Crim1 has an essential role in glycogen trophoblast cell and sinusoidal-trophoblast giant cell development in the placenta.

Pennisi DJ, Kinna G, Chiu HS, Simmons DG, Wilkinson L, Little MH.

Placenta. 2012 Mar;33(3):175-82. doi: 10.1016/j.placenta.2011.12.014. Epub 2012 Jan 5.

PMID:
22225908
30.

An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma.

Sumazin P, Yang X, Chiu HS, Chung WJ, Iyer A, Llobet-Navas D, Rajbhandari P, Bansal M, Guarnieri P, Silva J, Califano A.

Cell. 2011 Oct 14;147(2):370-81. doi: 10.1016/j.cell.2011.09.041.

31.

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling.

Thiagarajan RD, Cloonan N, Gardiner BB, Mercer TR, Kolle G, Nourbakhsh E, Wani S, Tang D, Krishnan K, Georgas KM, Rumballe BA, Chiu HS, Steen JA, Mattick JS, Little MH, Grimmond SM.

BMC Genomics. 2011 Sep 5;12:441. doi: 10.1186/1471-2164-12-441.

32.

Expression and functional analysis of Dkk1 during early gonadal development.

Combes AN, Bowles J, Feng CW, Chiu HS, Khoo PL, Jackson A, Little MH, Tam PP, Koopman P.

Sex Dev. 2011;5(3):124-30. doi: 10.1159/000327709. Epub 2011 May 24.

33.

Expression of metanephric nephron-patterning genes in differentiating mesonephric tubules.

Georgas KM, Chiu HS, Lesieur E, Rumballe BA, Little MH.

Dev Dyn. 2011 Jun;240(6):1600-12. doi: 10.1002/dvdy.22640. Epub 2011 Apr 12.

34.

Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways.

Thiagarajan RD, Georgas KM, Rumballe BA, Lesieur E, Chiu HS, Taylor D, Tang DT, Grimmond SM, Little MH.

PLoS One. 2011 Feb 28;6(2):e17286. doi: 10.1371/journal.pone.0017286.

35.

Comparative gene expression analysis of genital tubercle development reveals a putative appendicular Wnt7 network for the epidermal differentiation.

Chiu HS, Szucsik JC, Georgas KM, Jones JL, Rumballe BA, Tang D, Grimmond SM, Lewis AG, Aronow BJ, Lessard JL, Little MH.

Dev Biol. 2010 Aug 15;344(2):1071-87. doi: 10.1016/j.ydbio.2010.05.495. Epub 2010 May 24.

36.

Analysis of early nephron patterning reveals a role for distal RV proliferation in fusion to the ureteric tip via a cap mesenchyme-derived connecting segment.

Georgas K, Rumballe B, Valerius MT, Chiu HS, Thiagarajan RD, Lesieur E, Aronow BJ, Brunskill EW, Combes AN, Tang D, Taylor D, Grimmond SM, Potter SS, McMahon AP, Little MH.

Dev Biol. 2009 Aug 15;332(2):273-86. doi: 10.1016/j.ydbio.2009.05.578. Epub 2009 Jun 6.

37.

Use of dual section mRNA in situ hybridisation/immunohistochemistry to clarify gene expression patterns during the early stages of nephron development in the embryo and in the mature nephron of the adult mouse kidney.

Georgas K, Rumballe B, Wilkinson L, Chiu HS, Lesieur E, Gilbert T, Little MH.

Histochem Cell Biol. 2008 Nov;130(5):927-42. doi: 10.1007/s00418-008-0454-3. Epub 2008 Jul 11.

PMID:
18618131
38.

PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.

Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL.

Proteins. 2008 Aug;72(2):693-710. doi: 10.1002/prot.21944.

PMID:
18260102
39.

Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.

Lo A, Chiu HS, Sung TY, Lyu PC, Hsu WL.

J Proteome Res. 2008 Feb;7(2):487-96.

PMID:
18081245
40.

Protein subcellular localization prediction based on compartment-specific features and structure conservation.

Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 8;8:330.

41.

A high-resolution anatomical ontology of the developing murine genitourinary tract.

Little MH, Brennan J, Georgas K, Davies JA, Davidson DR, Baldock RA, Beverdam A, Bertram JF, Capel B, Chiu HS, Clements D, Cullen-McEwen L, Fleming J, Gilbert T, Herzlinger D, Houghton D, Kaufman MH, Kleymenova E, Koopman PA, Lewis AG, McMahon AP, Mendelsohn CL, Mitchell EK, Rumballe BA, Sweeney DE, Valerius MT, Yamada G, Yang Y, Yu J.

Gene Expr Patterns. 2007 Jun;7(6):680-99. Epub 2007 Mar 23. Erratum in: Gene Expr Patterns. 2007 Dec;8(1):47-50.

42.

Protein subcellular localization prediction based on compartment-specific biological features.

Su CY, Lo A, Chiu HS, Sung TY, Hsu WL.

Comput Syst Bioinformatics Conf. 2006:325-30.

43.
44.

Small bowel perforation after radiotherapy for cervical carcinoma.

Cheung CP, Chiu HS, Chung CH.

Hong Kong Med J. 2003 Dec;9(6):461-3.

45.

Significance of appendicoliths in abdominal pain.

Ng CP, Chiu HS, Chung CH.

J Emerg Med. 2003 May;24(4):459-61. No abstract available.

PMID:
12745052
46.

Regionalization of infant transports: the southern California experience and its implications. I: Referral pattern.

Chiu HS, Vogt JF, Chan LS, Rother CE.

J Perinatol. 1993 Jul-Aug;13(4):288-96.

PMID:
8410385
47.

Hyalinizing trabecular adenoma-like lesion in multinodular goitre.

Chan JK, Tse CC, Chiu HS.

Histopathology. 1990 Jun;16(6):611-4.

PMID:
2376403
48.

Quantitation of plasma thyroxine by enzyme immunoassay: a new approach.

Chui SH, Isles TE, Chiu HS, Lam CW, Lewis WH.

Med Lab Sci. 1988 Jul;45(3):245-9. No abstract available.

PMID:
3062307
49.

Post-traumatic fat embolism--its clinical and subclinical presentations.

Chan KM, Tham KT, Chiu HS, Chow YN, Leung PC.

J Trauma. 1984 Jan;24(1):45-9.

PMID:
6694225

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