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Items: 34

1.

Neonatal Diet Impacts Bioregional Microbiota Composition in Piglets Fed Human Breast Milk or Infant Formula.

Brink LR, Matazel K, Piccolo BD, Bowlin AK, Chintapalli SV, Shankar K, Yeruva L.

J Nutr. 2019 Aug 2. pii: nxz170. doi: 10.1093/jn/nxz170. [Epub ahead of print]

PMID:
31373372
2.

Dietary supplementation with strawberry induces marked changes in the composition and functional potential of the gut microbiome in diabetic mice.

Petersen C, Wankhade UD, Bharat D, Wong K, Mueller JE, Chintapalli SV, Piccolo BD, Jalili T, Jia Z, Symons JD, Shankar K, Anandh Babu PV.

J Nutr Biochem. 2019 Apr;66:63-69. doi: 10.1016/j.jnutbio.2019.01.004. Epub 2019 Jan 18.

PMID:
30771735
3.

Sex-Specific Changes in Gut Microbiome Composition following Blueberry Consumption in C57BL/6J Mice.

Wankhade UD, Zhong Y, Lazarenko OP, Chintapalli SV, Piccolo BD, Chen JR, Shankar K.

Nutrients. 2019 Feb 1;11(2). pii: E313. doi: 10.3390/nu11020313.

4.

Binding energies and the entry route of palmitic acid and palmitoylcarnitine into myoglobin.

Chintapalli SV, Anishkin A, Adams SH.

Data Brief. 2018 Oct 27;21:1106-1110. doi: 10.1016/j.dib.2018.10.118. eCollection 2018 Dec.

5.

Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice.

Wankhade UD, Zhong Y, Kang P, Alfaro M, Chintapalli SV, Piccolo BD, Mercer KE, Andres A, Thakali KM, Shankar K.

Sci Rep. 2018 Nov 7;8(1):16502. doi: 10.1038/s41598-018-34453-0.

6.

The S6 gate in regulatory Kv6 subunits restricts heteromeric K+ channel stoichiometry.

Pisupati A, Mickolajczyk KJ, Horton W, van Rossum DB, Anishkin A, Chintapalli SV, Li X, Chu-Luo J, Busey G, Hancock WO, Jegla T.

J Gen Physiol. 2018 Dec 3;150(12):1702-1721. doi: 10.1085/jgp.201812121. Epub 2018 Oct 15.

7.

Human Breast-Milk Feeding Enhances the Humoral and Cell-Mediated Immune Response in Neonatal Piglets.

Miklavcic JJ, Badger TM, Bowlin AK, Matazel KS, Cleves MA, LeRoith T, Saraf MK, Chintapalli SV, Piccolo BD, Shankar K, Yeruva L.

J Nutr. 2018 Nov 1;148(11):1860-1870. doi: 10.1093/jn/nxy170.

8.

Exploring the entry route of palmitic acid and palmitoylcarnitine into myoglobin.

Chintapalli SV, Anishkin A, Adams SH.

Arch Biochem Biophys. 2018 Oct 1;655:56-66. doi: 10.1016/j.abb.2018.07.024. Epub 2018 Aug 6.

PMID:
30092229
9.

Infant Formula Feeding Increases Hepatic Cholesterol 7╬▒ Hydroxylase (CYP7A1) Expression and Fecal Bile Acid Loss in Neonatal Piglets.

Mercer KE, Bhattacharyya S, Diaz-Rubio ME, Piccolo BD, Pack LM, Sharma N, Chaudhury M, Cleves MA, Chintapalli SV, Shankar K, Ronis MJJ, Yeruva L.

J Nutr. 2018 May 1;148(5):702-711. doi: 10.1093/jn/nxy038.

PMID:
30053282
10.

Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model.

Piccolo BD, Graham JL, Stanhope KL, Nookaew I, Mercer KE, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH.

Am J Physiol Endocrinol Metab. 2018 Nov 1;315(5):E961-E972. doi: 10.1152/ajpendo.00203.2018. Epub 2018 Jul 17.

11.

Cecal versus fecal microbiota in Ossabaw swine and implications for obesity.

Panasevich MR, Wankhade UD, Chintapalli SV, Shankar K, Rector RS.

Physiol Genomics. 2018 May 1;50(5):355-368. doi: 10.1152/physiolgenomics.00110.2017. Epub 2018 Mar 9.

12.

Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.

Piccolo BD, Wankhade UD, Chintapalli SV, Bhattacharyya S, Chunqiao L, Shankar K.

Bioinformatics. 2018 Mar 15;34(6):1050-1052. doi: 10.1093/bioinformatics/btx686.

13.

High-fat, high-fructose, high-cholesterol feeding causes severe NASH and cecal microbiota dysbiosis in juvenile Ossabaw swine.

Panasevich MR, Meers GM, Linden MA, Booth FW, Perfield JW 2nd, Fritsche KL, Wankhade UD, Chintapalli SV, Shankar K, Ibdah JA, Rector RS.

Am J Physiol Endocrinol Metab. 2018 Jan 1;314(1):E78-E92. doi: 10.1152/ajpendo.00015.2017. Epub 2017 Sep 12.

14.

Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon´╗┐.

Saraf MK, Piccolo BD, Bowlin AK, Mercer KE, LeRoith T, Chintapalli SV, Shankar K, Badger TM, Yeruva L.

Microbiome. 2017 Jul 14;5(1):77. doi: 10.1186/s40168-017-0297-z.

15.

Early Postnatal Diets Affect the Bioregional Small Intestine Microbiome and Ileal Metabolome in Neonatal Pigs.

Piccolo BD, Mercer KE, Bhattacharyya S, Bowlin AK, Saraf MK, Pack L, Chintapalli SV, Shankar K, Adams SH, Badger TM, Yeruva L.

J Nutr. 2017 Aug;147(8):1499-1509. doi: 10.3945/jn.117.252767. Epub 2017 Jun 28.

PMID:
28659406
16.

Soy compared with milk protein in a Western diet changes fecal microbiota and decreases hepatic steatosis in obese OLETF rats.

Panasevich MR, Schuster CM, Phillips KE, Meers GM, Chintapalli SV, Wankhade UD, Shankar K, Butteiger DN, Krul ES, Thyfault JP, Rector RS.

J Nutr Biochem. 2017 Aug;46:125-136. doi: 10.1016/j.jnutbio.2017.05.004. Epub 2017 May 31.

17.

Enhanced offspring predisposition to steatohepatitis with maternal high-fat diet is associated with epigenetic and microbiome alterations.

Wankhade UD, Zhong Y, Kang P, Alfaro M, Chintapalli SV, Thakali KM, Shankar K.

PLoS One. 2017 Apr 17;12(4):e0175675. doi: 10.1371/journal.pone.0175675. eCollection 2017.

18.

Novel Molecular Interactions of Acylcarnitines and Fatty Acids with Myoglobin.

Chintapalli SV, Jayanthi S, Mallipeddi PL, Gundampati R, Suresh Kumar TK, van Rossum DB, Anishkin A, Adams SH.

J Biol Chem. 2016 Nov 25;291(48):25133-25143. Epub 2016 Oct 7.

19.

Gut microbiota are linked to increased susceptibility to hepatic steatosis in low-aerobic-capacity rats fed an acute high-fat diet.

Panasevich MR, Morris EM, Chintapalli SV, Wankhade UD, Shankar K, Britton SL, Koch LG, Thyfault JP, Rector RS.

Am J Physiol Gastrointest Liver Physiol. 2016 Jul 1;311(1):G166-79. doi: 10.1152/ajpgi.00065.2016. Epub 2016 Jun 10.

20.

Erratum to: Formula diet alters small intestine morphology, microbial abundance and reduces VE-cadherin and IL-10 expression in neonatal porcine model.

Yeruva L, Spencer NE, Saraf MK, Hennings L, Bowlin AK, Cleves MA, Mercer K, Chintapalli SV, Shankar K, Rank RG, Badger TM, Ronis MJ.

BMC Gastroenterol. 2016 May 26;16(1):55. No abstract available.

21.

Formula diet alters small intestine morphology, microbial abundance and reduces VE-cadherin and IL-10 expression in neonatal porcine model.

Yeruva L, Spencer NE, Saraf MK, Hennings L, Bowlin AK, Cleves MA, Mercer K, Chintapalli SV, Shankar K, Rank RG, Badger TM, Ronis MJ.

BMC Gastroenterol. 2016 Mar 22;16:40. doi: 10.1186/s12876-016-0456-x. Erratum in: BMC Gastroenterol. 2016;16(1):55.

22.

Bimodal regulation of an Elk subfamily K+ channel by phosphatidylinositol 4,5-bisphosphate.

Li X, Anishkin A, Liu H, van Rossum DB, Chintapalli SV, Sassic JK, Gallegos D, Pivaroff-Ward K, Jegla T.

J Gen Physiol. 2015 Nov;146(5):357-74. doi: 10.1085/jgp.201511491.

23.

Molecular dynamic simulations reveal the structural determinants of Fatty Acid binding to oxy-myoglobin.

Chintapalli SV, Bhardwaj G, Patel R, Shah N, Patterson RL, van Rossum DB, Anishkin A, Adams SH.

PLoS One. 2015 Jun 1;10(6):e0128496. doi: 10.1371/journal.pone.0128496. eCollection 2015.

24.

The BRCA1 tumor suppressor binds to inositol 1,4,5-trisphosphate receptors to stimulate apoptotic calcium release.

Hedgepeth SC, Garcia MI, Wagner LE 2nd, Rodriguez AM, Chintapalli SV, Snyder RR, Hankins GD, Henderson BR, Brodie KM, Yule DI, van Rossum DB, Boehning D.

J Biol Chem. 2015 Mar 13;290(11):7304-13. doi: 10.1074/jbc.M114.611186. Epub 2015 Feb 2.

25.

TRPV channel-mediated calcium transients in nociceptor neurons are dispensable for avoidance behaviour.

Lindy AS, Parekh PK, Zhu R, Kanju P, Chintapalli SV, Tsvilovskyy V, Patterson RL, Anishkin A, van Rossum DB, Liedtke WB.

Nat Commun. 2014 Sep 2;5:4734. doi: 10.1038/ncomms5734.

26.

Assessing the effect of dynamics on the closed-loop protein-folding hypothesis.

Chintapalli SV, Illingworth CJ, Upton GJ, Sacquin-Mora S, Reeves PJ, Mohammedali HS, Reynolds CA.

J R Soc Interface. 2013 Nov 20;11(91):20130935. doi: 10.1098/rsif.2013.0935. Print 2014 Feb 6.

27.

Reevaluation of the evolutionary events within recA/RAD51 phylogeny.

Chintapalli SV, Bhardwaj G, Babu J, Hadjiyianni L, Hong Y, Todd GK, Boosalis CA, Zhang Z, Zhou X, Ma H, Anishkin A, van Rossum DB, Patterson RL.

BMC Genomics. 2013 Apr 10;14:240. doi: 10.1186/1471-2164-14-240.

28.

Identifying subset errors in multiple sequence alignments.

Roy A, Taddese B, Vohra S, Thimmaraju PK, Illingworth CJ, Simpson LM, Mukherjee K, Reynolds CA, Chintapalli SV.

J Biomol Struct Dyn. 2014;32(3):364-71. doi: 10.1080/07391102.2013.770371. Epub 2013 Mar 25.

PMID:
23527867
29.

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.

Bhardwaj G, Ko KD, Hong Y, Zhang Z, Ho NL, Chintapalli SV, Kline LA, Gotlin M, Hartranft DN, Patterson ME, Dave F, Smith EJ, Holmes EC, Patterson RL, van Rossum DB.

PLoS One. 2012;7(4):e34261. doi: 10.1371/journal.pone.0034261. Epub 2012 Apr 13.

30.

Predicting protein folds with fold-specific PSSM libraries.

Hong Y, Chintapalli SV, Ko KD, Bhardwaj G, Zhang Z, van Rossum D, Patterson RL.

PLoS One. 2011;6(6):e20557. doi: 10.1371/journal.pone.0020557. Epub 2011 Jun 16.

31.

Conserved GXXXG- and S/T-like motifs in the transmembrane domains of NS4B protein are required for hepatitis C virus replication.

Han Q, Aligo J, Manna D, Belton K, Chintapalli SV, Hong Y, Patterson RL, van Rossum DB, Konan KV.

J Virol. 2011 Jul;85(13):6464-79. doi: 10.1128/JVI.02298-10. Epub 2011 Apr 20.

32.

Closed loop folding units from structural alignments: experimental foldons revisited.

Chintapalli SV, Yew BK, Illingworth CJ, Upton GJ, Reeves PJ, Parkes KE, Snell CR, Reynolds CA.

J Comput Chem. 2010 Nov 30;31(15):2689-701. doi: 10.1002/jcc.21562.

PMID:
20839296
33.

Computational studies of Family A and Family B GPCRs.

Vohra S, Chintapalli SV, Illingworth CJ, Reeves PJ, Mullineaux PM, Clark HS, Dean MK, Upton GJ, Reynolds CA.

Biochem Soc Trans. 2007 Aug;35(Pt 4):749-54. Review.

PMID:
17635140
34.

Conservation of closed loops.

Yew BK, Chintapalli SV, Upton GG, Reynolds CA.

J Mol Graph Model. 2007 Oct;26(3):652-5. Epub 2007 Mar 24.

PMID:
17459747

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