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Allelic Variation in the Chloroplast Division Gene FtsZ2-2 Leads to Natural Variation in Chloroplast Size.

Kadirjan-Kalbach DK, Turmo A, Wang J, Smith BC, Chen C, Porter KJ, Childs K, DellaPenna D, Osteryoung KW.

Plant Physiol. 2019 Sep 5. pii: pp.00841.2019. doi: 10.1104/pp.19.00841. [Epub ahead of print]


Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae.

Lloyd JP, Bowman MJ, Azodi CB, Sowers RP, Moghe GD, Childs KL, Shiu SH.

Sci Rep. 2019 Aug 20;9(1):12122. doi: 10.1038/s41598-019-47797-y.


Suboptimal SVR rates in African patients with atypical genotype 1 subtypes: Implications for global elimination of hepatitis C.

Childs K, Davis C, Cannon M, Montague S, Filipe A, Tong L, Simmonds P, Smith D, Thomson EC, Dusheiko G, Agarwal K.

J Hepatol. 2019 Aug 7. pii: S0168-8278(19)30468-4. doi: 10.1016/j.jhep.2019.07.025. [Epub ahead of print]


Transcriptional Regulation of the Glucose-6-Phosphate/Phosphate Translocator 2 Is Related to Carbon Exchange Across the Chloroplast Envelope.

Weise SE, Liu T, Childs KL, Preiser AL, Katulski HM, Perrin-Porzondek C, Sharkey TD.

Front Plant Sci. 2019 Jun 27;10:827. doi: 10.3389/fpls.2019.00827. eCollection 2019.


Genome Sequencing and Transcriptome Analysis of the Hop Downy Mildew Pathogen Pseudoperonospora humuli Reveal Species-Specific Genes for Molecular Detection.

Rahman A, Góngora-Castillo E, Bowman MJ, Childs KL, Gent DH, Martin FN, Quesada-Ocampo LM.

Phytopathology. 2019 Aug;109(8):1354-1366. doi: 10.1094/PHYTO-11-18-0431-R. Epub 2019 Jun 26.


Corrigendum: Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens.

Sternberger AL, Bowman MJ, Kruse CPS, Childs KL, Ballard HE, Wyatt SE.

Front Plant Sci. 2019 Mar 18;10:278. doi: 10.3389/fpls.2019.00278. eCollection 2019.


Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.


Transcriptomics Identifies Modules of Differentially Expressed Genes and Novel Cyclotides in Viola pubescens.

Sternberger AL, Bowman MJ, Kruse CPS, Childs KL, Ballard HE, Wyatt SE.

Front Plant Sci. 2019 Feb 15;10:156. doi: 10.3389/fpls.2019.00156. eCollection 2019. Erratum in: Front Plant Sci. 2019 Mar 18;10:278.


Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.


Isoprene Acts as a Signaling Molecule in Gene Networks Important for Stress Responses and Plant Growth.

Zuo Z, Weraduwage SM, Lantz AT, Sanchez LM, Weise SE, Wang J, Childs KL, Sharkey TD.

Plant Physiol. 2019 May;180(1):124-152. doi: 10.1104/pp.18.01391. Epub 2019 Feb 13.


Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.

Colle M, Leisner CP, Wai CM, Ou S, Bird KA, Wang J, Wisecaver JH, Yocca AE, Alger EI, Tang H, Xiong Z, Callow P, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Song GQ, Childs KL, Schilmiller A, Vorsa N, Buell CR, VanBuren R, Jiang N, Edger PP.

Gigascience. 2019 Mar 1;8(3). pii: giz012. doi: 10.1093/gigascience/giz012.


Weaning of Moderately Preterm Infants from the Incubator to the Crib: A Randomized Clinical Trial.

Shankaran S, Bell EF, Laptook AR, Saha S, Newman NS, Kazzi SNJ, Barks J, Stoll BJ, Bara R, Gabrio J, Childs K, Das A, Higgins RD, Carlo WA, Sánchez PJ, Carlton DP, Pavageau L, Malcolm WF, D'Angio CT, Ohls RK, Poindexter BB, Sokol GM, Van Meurs KP, Colaizy TT, Khmour A, Puopolo KM, Garg M, Walsh MC; Eunice Kennedy Shriver National Institute of Child Health, and Human Development Neonatal Research Network.

J Pediatr. 2019 Jan;204:96-102.e4. doi: 10.1016/j.jpeds.2018.08.079. Epub 2018 Oct 15.


A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome.

VanBuren R, Wai CM, Colle M, Wang J, Sullivan S, Bushakra JM, Liachko I, Vining KJ, Dossett M, Finn CE, Jibran R, Chagné D, Childs K, Edger PP, Mockler TC, Bassil NV.

Gigascience. 2018 Aug 1;7(8). doi: 10.1093/gigascience/giy094.


Efficacy and Tolerability of Direct-Acting Antivirals for Hepatitis C in Older Adults.

Mazzarelli C, Considine A, Childs K, Carey I, Manini MA, Suddle A, Dusheiko G, Agarwal K, Cannon MD.

J Am Geriatr Soc. 2018 Jul;66(7):1339-1345. doi: 10.1111/jgs.15392. Epub 2018 May 25.


Serum NGAL can act as an early renal safety biomarker during long-term nucleos(t)ide analogue antiviral therapy in chronic hepatitis B.

Carey I, Byrne R, Childs K, Horner M, Bruce M, Wang B, Dusheiko G, Agarwal K.

J Viral Hepat. 2018 Oct;25(10):1139-1150. doi: 10.1111/jvh.12916. Epub 2018 May 11.


A missense mutation in TRAPPC6A leads to build-up of the protein, in patients with a neurodevelopmental syndrome and dysmorphic features.

Mohamoud HS, Ahmed S, Jelani M, Alrayes N, Childs K, Vadgama N, Almramhi MM, Al-Aama JY, Goodbourn S, Nasir J.

Sci Rep. 2018 Feb 1;8(1):2053. doi: 10.1038/s41598-018-20658-w.


Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity.

Edger PP, VanBuren R, Colle M, Poorten TJ, Wai CM, Niederhuth CE, Alger EI, Ou S, Acharya CB, Wang J, Callow P, McKain MR, Shi J, Collier C, Xiong Z, Mower JP, Slovin JP, Hytönen T, Jiang N, Childs KL, Knapp SJ.

Gigascience. 2018 Feb 1;7(2):1-7. doi: 10.1093/gigascience/gix124.


Dual impact of elevated temperature on plant defence and bacterial virulence in Arabidopsis.

Huot B, Castroverde CDM, Velásquez AC, Hubbard E, Pulman JA, Yao J, Childs KL, Tsuda K, Montgomery BL, He SY.

Nat Commun. 2017 Nov 27;8(1):1808. doi: 10.1038/s41467-017-01674-2.


A modified GC-specific MAKER gene annotation method reveals improved and novel gene predictions of high and low GC content in Oryza sativa.

Bowman MJ, Pulman JA, Liu TL, Childs KL.

BMC Bioinformatics. 2017 Nov 25;18(1):522. doi: 10.1186/s12859-017-1942-z.


Comparative genomics of Spiraeoideae-infecting Erwinia amylovora strains provides novel insight to genetic diversity and identifies the genetic basis of a low-virulence strain.

Zeng Q, Cui Z, Wang J, Childs KL, Sundin GW, Cooley DR, Yang CH, Garofalo E, Eaton A, Huntley RB, Yuan X, Schultes NP.

Mol Plant Pathol. 2018 Jul;19(7):1652-1666. doi: 10.1111/mpp.12647. Epub 2018 Mar 6.


Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.

Copetti D, Búrquez A, Bustamante E, Charboneau JLM, Childs KL, Eguiarte LE, Lee S, Liu TL, McMahon MM, Whiteman NK, Wing RA, Wojciechowski MF, Sanderson MJ.

Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):12003-12008. doi: 10.1073/pnas.1706367114. Epub 2017 Oct 23.


Dolutegravir-induced liver injury leading to sub-acute liver failure requiring transplantation: a case report and review of literature.

Wang B, Abbott L, Childs K, Taylor C, Agarwal K, Cormack I, Miquel R, Suddle A.

Int J STD AIDS. 2018 Mar;29(4):414-417. doi: 10.1177/0956462417734099. Epub 2017 Oct 23. Review.


Trans Male Voice in the First Year of Testosterone Therapy: Make No Assumptions.

Hancock AB, Childs KD, Irwig MS.

J Speech Lang Hear Res. 2017 Sep 18;60(9):2472-2482. doi: 10.1044/2017_JSLHR-S-16-0320.


Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower.

Edger PP, Smith R, McKain MR, Cooley AM, Vallejo-Marin M, Yuan Y, Bewick AJ, Ji L, Platts AE, Bowman MJ, Childs KL, Washburn JD, Schmitz RJ, Smith GD, Pires JC, Puzey JR.

Plant Cell. 2017 Sep;29(9):2150-2167. doi: 10.1105/tpc.17.00010. Epub 2017 Aug 16.


A toolkit for Nannochloropsis oceanica CCMP1779 enables gene stacking and genetic engineering of the eicosapentaenoic acid pathway for enhanced long-chain polyunsaturated fatty acid production.

Poliner E, Pulman JA, Zienkiewicz K, Childs K, Benning C, Farré EM.

Plant Biotechnol J. 2018 Jan;16(1):298-309. doi: 10.1111/pbi.12772. Epub 2017 Jul 13.


Use of structured professional judgment by probation officers to assess risk for recidivism in adolescent offenders.

Lawing K, Childs KK, Frick PJ, Vincent G.

Psychol Assess. 2017 Jun;29(6):652-663. doi: 10.1037/pas0000414.


Immunological Predictors of Nonresponse to Directly Acting Antiviral Therapy in Patients With Chronic Hepatitis C and Decompensated Cirrhosis.

Childs K, Merritt E, Considine A, Sanchez-Fueyo A, Agarwal K, Martinez-Llordella M, Carey I.

Open Forum Infect Dis. 2017 Apr 3;4(2):ofx067. doi: 10.1093/ofid/ofx067. eCollection 2017 Spring.


Correction: Genome, Functional Gene Annotation, and Nuclear Transformation of the Heterokont Oleaginous Alga Nannochloropsis oceanica CCMP1779.

Vieler A, Wu G, Tsai CH, Bullard B, Cornish AJ, Harvey C, Reca IB, Thornburg C, Achawanantakun R, Buehl CJ, Campbell MS, Cavalier D, Childs KL, Clark TJ, Deshpande R, Erickson E, Armenia Ferguson A, Handee W, Kong Q, Li X, Liu B, Lundback S, Peng C, Roston RL, Sanjaya, Simpson JP, TerBush A, Warakanont J, Zäuner S, Farre EM, Hegg EL, Jiang N, Kuo MH, Lu Y, Niyogi KK, Ohlrogge J, Osteryoung KW, Shachar-Hill Y, Sears BB, Sun Y, Takahashi H, Yandell M, Shiu SH, Benning C.

PLoS Genet. 2017 May 23;13(5):e1006802. doi: 10.1371/journal.pgen.1006802. eCollection 2017 May.


Cirrhosis and liver transplantation in patients co-infected with HIV and hepatitis B or C: an observational cohort study.

Warren-Gash C, Childs K, Thornton A, Bhagani S, Demma S, Srivastava A, Leen C, Agarwal K, Rodger AJ, Sabin CA; Joint UK CHIC and liver transplant advisory group.

Infection. 2017 Apr;45(2):215-220. doi: 10.1007/s15010-016-0976-x. Epub 2017 Jan 4.


Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.

Frazier TP, Palmer NA, Xie F, Tobias CM, Donze-Reiner TJ, Bombarely A, Childs KL, Shu S, Jenkins JW, Schmutz J, Zhang B, Sarath G, Zhao B.

BMC Genomics. 2016 Nov 8;17(1):892.


Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Hirsch CN, Hirsch CD, Brohammer AB, Bowman MJ, Soifer I, Barad O, Shem-Tov D, Baruch K, Lu F, Hernandez AG, Fields CJ, Wright CL, Koehler K, Springer NM, Buckler E, Buell CR, de Leon N, Kaeppler SM, Childs KL, Mikel MA.

Plant Cell. 2016 Nov;28(11):2700-2714. Epub 2016 Nov 1.


Editor's Highlight: Development of an In vitro Assay Measuring Uterine-Specific Estrogenic Responses for Use in Chemical Safety Assessment.

Miller MM, Alyea RA, LeSommer C, Doheny DL, Rowley SM, Childs KM, Balbuena P, Ross SM, Dong J, Sun B, Andersen MA, Clewell RA.

Toxicol Sci. 2016 Nov;154(1):162-173. Epub 2016 Aug 7.


Effects of testosterone on the transgender male voice.

Irwig MS, Childs K, Hancock AB.

Andrology. 2017 Jan;5(1):107-112. doi: 10.1111/andr.12278. Epub 2016 Sep 19.


Fine mapping of the stem rust resistance gene SrTA10187.

Wiersma AT, Brown LK, Brisco EI, Liu TL, Childs KL, Poland JA, Sehgal SK, Olson EL.

Theor Appl Genet. 2016 Dec;129(12):2369-2378. Epub 2016 Aug 31.


Analysis of salt-induced physiological and proline changes in 46 switchgrass (Panicum virgatum) lines indicates multiple response modes.

Kim J, Liu Y, Zhang X, Zhao B, Childs KL.

Plant Physiol Biochem. 2016 Aug;105:203-212. doi: 10.1016/j.plaphy.2016.04.020. Epub 2016 Apr 13.


Directly acting antivirals for hepatitis C virus arrive in HIV/hepatitis C virus co-infected patients: from 'mind the gap' to 'where's the gap?'.

Childs K, Taylor C, Dieterich D, Agarwal K.

AIDS. 2016 Apr 24;30(7):975-89. doi: 10.1097/QAD.0000000000001042. Review.


Assessment of drought tolerance of 49 switchgrass (Panicum virgatum) genotypes using physiological and morphological parameters.

Liu Y, Zhang X, Tran H, Shan L, Kim J, Childs K, Ervin EH, Frazier T, Zhao B.

Biotechnol Biofuels. 2015 Sep 22;8:152. doi: 10.1186/s13068-015-0342-8. eCollection 2015.


Race Differences in Patterns of Risky Behavior and Associated Risk Factors in Adolescence.

Childs KK, Ray JV.

Int J Offender Ther Comp Criminol. 2017 May;61(7):773-794. doi: 10.1177/0306624X15599401. Epub 2015 Aug 7.


Detection of the NS3 Q80K polymorphism by Sanger and deep sequencing in hepatitis C virus genotype 1a strains in the UK.

Beloukas A, King S, Childs K, Papadimitropoulos A, Hopkins M, Atkins M, Agarwal K, Nelson M, Geretti AM.

Clin Microbiol Infect. 2015 Nov;21(11):1033-9. doi: 10.1016/j.cmi.2015.07.017. Epub 2015 Jul 29.


Intersex in the clam Scrobicularia plana (Da Costa): Widespread occurrence in English Channel estuaries and surrounding areas.

Pope ND, Childs K, Dang C, Davey MS, O'Hara SC, Langston K, Minier C, Pascoe PL, Shortridge E, Langston WJ.

Mar Pollut Bull. 2015 Jun 30;95(2):598-609. doi: 10.1016/j.marpolbul.2015.02.039. Epub 2015 Mar 30.


Genome-guided investigation of plant natural product biosynthesis.

Kellner F, Kim J, Clavijo BJ, Hamilton JP, Childs KL, Vaillancourt B, Cepela J, Habermann M, Steuernagel B, Clissold L, McLay K, Buell CR, O'Connor SE.

Plant J. 2015 May;82(4):680-92. doi: 10.1111/tpj.12827. Epub 2015 Apr 11. Erratum in: Plant J. 2019 May;98(4):760.


Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes.

Law M, Childs KL, Campbell MS, Stein JC, Olson AJ, Holt C, Panchy N, Lei J, Jiao D, Andorf CM, Lawrence CJ, Ware D, Shiu SH, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2015 Jan;167(1):25-39. doi: 10.1104/pp.114.245027. Epub 2014 Nov 10.


A root-expressed L-phenylalanine:4-hydroxyphenylpyruvate aminotransferase is required for tropane alkaloid biosynthesis in Atropa belladonna.

Bedewitz MA, Góngora-Castillo E, Uebler JB, Gonzales-Vigil E, Wiegert-Rininger KE, Childs KL, Hamilton JP, Vaillancourt B, Yeo YS, Chappell J, DellaPenna D, Jones AD, Buell CR, Barry CS.

Plant Cell. 2014 Sep;26(9):3745-62. doi: 10.1105/tpc.114.130534. Epub 2014 Sep 16.


Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR.

Plant J. 2014 Sep;79(6):993-1008. doi: 10.1111/tpj.12601. Epub 2014 Aug 11.


An improved genome release (version Mt4.0) for the model legume Medicago truncatula.

Tang H, Krishnakumar V, Bidwell S, Rosen B, Chan A, Zhou S, Gentzbittel L, Childs KL, Yandell M, Gundlach H, Mayer KF, Schwartz DC, Town CD.

BMC Genomics. 2014 Apr 27;15:312. doi: 10.1186/1471-2164-15-312.


Phenotypic and Transcriptional Analysis of Divergently Selected Maize Populations Reveals the Role of Developmental Timing in Seed Size Determination.

Sekhon RS, Hirsch CN, Childs KL, Breitzman MW, Kell P, Duvick S, Spalding EP, Buell CR, de Leon N, Kaeppler SM.

Plant Physiol. 2014 Jun;165(2):658-669. Epub 2014 Apr 7.


MAKER-P: a tool kit for the rapid creation, management, and quality control of plant genome annotations.

Campbell MS, Law M, Holt C, Stein JC, Moghe GD, Hufnagel DE, Lei J, Achawanantakun R, Jiao D, Lawrence CJ, Ware D, Shiu SH, Childs KL, Sun Y, Jiang N, Yandell M.

Plant Physiol. 2014 Feb;164(2):513-24. doi: 10.1104/pp.113.230144. Epub 2013 Dec 4.


Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data.

Kawahara Y, de la Bastide M, Hamilton JP, Kanamori H, McCombie WR, Ouyang S, Schwartz DC, Tanaka T, Wu J, Zhou S, Childs KL, Davidson RM, Lin H, Quesada-Ocampo L, Vaillancourt B, Sakai H, Lee SS, Kim J, Numa H, Itoh T, Buell CR, Matsumoto T.

Rice (N Y). 2013 Feb 6;6(1):4. doi: 10.1186/1939-8433-6-4.


Clinical factors that predict noncirrhotic portal hypertension in HIV-infected patients: a proposed diagnostic algorithm.

Parikh ND, Martel-Laferriere V, Kushner T, Childs K, Vachon ML, Dronamraju D, Taylor C, Fiel MI, Schiano T, Nelson M, Agarwal K, Dieterich DT.

J Infect Dis. 2014 Mar 1;209(5):734-8. doi: 10.1093/infdis/jit412. Epub 2013 Aug 2.


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