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Items: 31

1.

ProtaBank: A repository for protein design and engineering data.

Wang CY, Chang PM, Ary ML, Allen BD, Chica RA, Mayo SL, Olafson BD.

Protein Sci. 2019 Mar;28(3):672. doi: 10.1002/pro.3585. No abstract available.

2.

Designer proteins activate fluorescent molecules.

Chica RA.

Nature. 2018 Sep;561(7724):471-472. doi: 10.1038/d41586-018-06202-w. No abstract available.

PMID:
30254342
3.

Structural Determinants of the Stereoinverting Activity of Pseudomonas stutzeri d-Phenylglycine Aminotransferase.

Walton CJW, Thiebaut F, Brunzelle JS, Couture JF, Chica RA.

Biochemistry. 2018 Sep 18;57(37):5437-5446. doi: 10.1021/acs.biochem.8b00767. Epub 2018 Sep 7.

PMID:
30153007
4.

ProtaBank: A repository for protein design and engineering data.

Wang CY, Chang PM, Ary ML, Allen BD, Chica RA, Mayo SL, Olafson BD.

Protein Sci. 2018 Jun;27(6):1113-1124. doi: 10.1002/pro.3406. Epub 2018 Apr 30. Erratum in: Protein Sci. 2019 Mar;28(3):672.

5.

Rational design of proteins that exchange on functional timescales.

Davey JA, Damry AM, Goto NK, Chica RA.

Nat Chem Biol. 2017 Dec;13(12):1280-1285. doi: 10.1038/nchembio.2503. Epub 2017 Oct 23.

PMID:
29058725
6.

Structure-guided rational design of red fluorescent proteins: towards designer genetically-encoded fluorophores.

Eason MG, Damry AM, Chica RA.

Curr Opin Struct Biol. 2017 Aug;45:91-99. doi: 10.1016/j.sbi.2016.12.001. Epub 2016 Dec 27. Review.

PMID:
28038355
7.

Multistate Computational Protein Design with Backbone Ensembles.

Davey JA, Chica RA.

Methods Mol Biol. 2017;1529:161-179.

PMID:
27914050
8.

Turning a Negative into a Positive: Conversion of a Homodimer into a Heterodimer Using Negative State Repertoires.

Davey JA, Chica RA.

Structure. 2016 Apr 5;24(4):496-497. doi: 10.1016/j.str.2016.03.012.

9.

Brighter Red Fluorescent Proteins by Rational Design of Triple-Decker Motif.

Pandelieva AT, Baran MJ, Calderini GF, McCann JL, Tremblay V, Sarvan S, Davey JA, Couture JF, Chica RA.

ACS Chem Biol. 2016 Feb 19;11(2):508-17. doi: 10.1021/acschembio.5b00774. Epub 2016 Jan 5.

PMID:
26697759
10.

Prediction of Stable Globular Proteins Using Negative Design with Non-native Backbone Ensembles.

Davey JA, Damry AM, Euler CK, Goto NK, Chica RA.

Structure. 2015 Nov 3;23(11):2011-21. doi: 10.1016/j.str.2015.07.021. Epub 2015 Sep 24.

11.

Structural chromosome rearrangements in prenatal diagnosis: results from a Spanish database.

de la Chica RA, de Lara À, Nonell L, Clusellas N.

Eur J Obstet Gynecol Reprod Biol. 2015 Nov;194:252-4. doi: 10.1016/j.ejogrb.2015.07.004. Epub 2015 Jul 17. No abstract available.

PMID:
26227736
12.

Protein engineering in the 21st century.

Chica RA.

Protein Sci. 2015 Apr;24(4):431-3. doi: 10.1002/pro.2656. Epub 2015 Mar 11. No abstract available.

13.

Discovery of substrates for a SET domain lysine methyltransferase predicted by multistate computational protein design.

Lanouette S, Davey JA, Elisma F, Ning Z, Figeys D, Chica RA, Couture JF.

Structure. 2015 Jan 6;23(1):206-215. doi: 10.1016/j.str.2014.11.004. Epub 2014 Dec 18.

14.

Optimization of rotamers prior to template minimization improves stability predictions made by computational protein design.

Davey JA, Chica RA.

Protein Sci. 2015 Apr;24(4):545-60. doi: 10.1002/pro.2618. Epub 2015 Jan 13.

15.

Continuous colorimetric screening assay for detection of d-amino acid aminotransferase mutants displaying altered substrate specificity.

Barber JE, Damry AM, Calderini GF, Walton CJ, Chica RA.

Anal Biochem. 2014 Oct 15;463:23-30. doi: 10.1016/j.ab.2014.06.006. Epub 2014 Jun 17.

PMID:
24949900
16.

Improving the accuracy of protein stability predictions with multistate design using a variety of backbone ensembles.

Davey JA, Chica RA.

Proteins. 2014 May;82(5):771-84. doi: 10.1002/prot.24457. Epub 2013 Nov 22.

PMID:
24174277
17.

Bioanalysis for biocatalysis: multiplexed capillary electrophoresis-mass spectrometry assay for aminotransferase substrate discovery and specificity profiling.

Mironov GG, St-Jacques AD, Mungham A, Eason MG, Chica RA, Berezovski MV.

J Am Chem Soc. 2013 Sep 18;135(37):13728-36. doi: 10.1021/ja407486z. Epub 2013 Sep 5.

PMID:
23964747
18.

A high-throughput assay for screening L- or D-amino acid specific aminotransferase mutant libraries.

Walton CJ, Chica RA.

Anal Biochem. 2013 Oct 15;441(2):190-8. doi: 10.1016/j.ab.2013.07.004. Epub 2013 Jul 16.

PMID:
23871995
19.

Recovery of red fluorescent protein chromophore maturation deficiency through rational design.

Moore MM, Oteng-Pabi SK, Pandelieva AT, Mayo SL, Chica RA.

PLoS One. 2012;7(12):e52463. doi: 10.1371/journal.pone.0052463. Epub 2012 Dec 20.

20.

Multistate approaches in computational protein design.

Davey JA, Chica RA.

Protein Sci. 2012 Sep;21(9):1241-52. doi: 10.1002/pro.2128. Epub 2012 Aug 10. Review.

21.

Iterative approach to computational enzyme design.

Privett HK, Kiss G, Lee TM, Blomberg R, Chica RA, Thomas LM, Hilvert D, Houk KN, Mayo SL.

Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3790-5. doi: 10.1073/pnas.1118082108. Epub 2012 Feb 22.

22.

Increased MLL gene rearrangements in amniocytes from fetuses of mothers who smoke.

de la Chica RA, Mediano C, Salido M, Espinet B, Manresa JM, Solé F.

Leuk Res. 2011 Aug;35(8):1066-9. doi: 10.1016/j.leukres.2011.04.010. Epub 2011 May 11.

PMID:
21565404
23.

Nerve agent hydrolysis activity designed into a human drug metabolism enzyme.

Hemmert AC, Otto TC, Chica RA, Wierdl M, Edwards JS, Lewis SM, Edwards CC, Tsurkan L, Cadieux CL, Kasten SA, Cashman JR, Mayo SL, Potter PM, Cerasoli DM, Redinbo MR.

PLoS One. 2011 Mar 18;6(3):e17441. doi: 10.1371/journal.pone.0017441. Erratum in: PLoS One. 2012;7(1). doi:10.1371/annotation/c5953f27-95f8-4a1b-a46c-639d90e182ac. Lewis, Steven L [corrected to Lewis, Steven M].

24.

Generation of longer emission wavelength red fluorescent proteins using computationally designed libraries.

Chica RA, Moore MM, Allen BD, Mayo SL.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20257-62. doi: 10.1073/pnas.1013910107. Epub 2010 Nov 8.

25.

Photolabeling of tissue transglutaminase reveals the binding mode of potent cinnamoyl inhibitors.

Pardin C, Roy I, Chica RA, Bonneil E, Thibault P, Lubell WD, Pelletier JN, Keillor JW.

Biochemistry. 2009 Apr 21;48(15):3346-53. doi: 10.1021/bi802021c.

PMID:
19271761
26.

Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design.

Chica RA, Doucet N, Pelletier JN.

Curr Opin Biotechnol. 2005 Aug;16(4):378-84. Review.

PMID:
15994074
27.

Chromosomal instability in amniocytes from fetuses of mothers who smoke.

de la Chica RA, Ribas I, Giraldo J, Egozcue J, Fuster C.

JAMA. 2005 Mar 9;293(10):1212-22.

PMID:
15755944
28.
29.

Expression and rapid purification of highly active hexahistidine-tagged guinea pig liver transglutaminase.

Gillet SM, Chica RA, Keillor JW, Pelletier JN.

Protein Expr Purif. 2004 Feb;33(2):256-64.

PMID:
14711514
30.

t(6;9)(p22;q34) associated with acute myeloblastic leukemia (M1)

Plaja A, Pueyo JM, Labraña X, Garcia D, de la Chica RA, Solé F, Woessner S, Mataix R, Molero T, Ojeda E.

Cancer Genet Cytogenet. 1992 Oct 1;63(1):76-7. No abstract available.

PMID:
1423232
31.

t(3;14)(q26;q11) associated with megakaryoblastic transformation of chronic myeloid leukemia.

de la Chica RA, Pueyo JM, Matilla A, Labraña X, Padron F, Guerras L, Sole F, Plaja A.

Cancer Genet Cytogenet. 1991 Aug;55(1):133-4. No abstract available.

PMID:
1913601

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