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Items: 14

1.

Models of polymer physics for the architecture of the cell nucleus.

Esposito A, Annunziatella C, Bianco S, Chiariello AM, Fiorillo L, Nicodemi M.

Wiley Interdiscip Rev Syst Biol Med. 2018 Dec 19:e1444. doi: 10.1002/wsbm.1444. [Epub ahead of print] Review.

PMID:
30566285
2.

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains.

Oudelaar AM, Davies JOJ, Hanssen LLP, Telenius JM, Schwessinger R, Liu Y, Brown JM, Downes DJ, Chiariello AM, Bianco S, Nicodemi M, Buckle VJ, Dekker J, Higgs DR, Hughes JR.

Nat Genet. 2018 Dec;50(12):1744-1751. doi: 10.1038/s41588-018-0253-2. Epub 2018 Oct 29.

PMID:
30374068
3.

Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis.

Kragesteen BK, Spielmann M, Paliou C, Heinrich V, Schöpflin R, Esposito A, Annunziatella C, Bianco S, Chiariello AM, Jerković I, Harabula I, Guckelberger P, Pechstein M, Wittler L, Chan WL, Franke M, Lupiáñez DG, Kraft K, Timmermann B, Vingron M, Visel A, Nicodemi M, Mundlos S, Andrey G.

Nat Genet. 2018 Oct;50(10):1463-1473. doi: 10.1038/s41588-018-0221-x. Epub 2018 Sep 27.

PMID:
30262816
4.

Polymer physics predicts the effects of structural variants on chromatin architecture.

Bianco S, Lupiáñez DG, Chiariello AM, Annunziatella C, Kraft K, Schöpflin R, Wittler L, Andrey G, Vingron M, Pombo A, Mundlos S, Nicodemi M.

Nat Genet. 2018 May;50(5):662-667. doi: 10.1038/s41588-018-0098-8. Epub 2018 Apr 16.

PMID:
29662163
5.

Molecular Dynamics simulations of the Strings and Binders Switch model of chromatin.

Annunziatella C, Chiariello AM, Esposito A, Bianco S, Fiorillo L, Nicodemi M.

Methods. 2018 Jun 1;142:81-88. doi: 10.1016/j.ymeth.2018.02.024. Epub 2018 Mar 6. Review.

PMID:
29522804
6.

Structure of the human chromosome interaction network.

Sarnataro S, Chiariello AM, Esposito A, Prisco A, Nicodemi M.

PLoS One. 2017 Nov 15;12(11):e0188201. doi: 10.1371/journal.pone.0188201. eCollection 2017.

7.

A Polymer Physics Investigation of the Architecture of the Murine Orthologue of the 7q11.23 Human Locus.

Chiariello AM, Esposito A, Annunziatella C, Bianco S, Fiorillo L, Prisco A, Nicodemi M.

Front Neurosci. 2017 Oct 10;11:559. doi: 10.3389/fnins.2017.00559. eCollection 2017. Review.

8.

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A.

Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24.

PMID:
28436944
9.

Predicting chromatin architecture from models of polymer physics.

Bianco S, Chiariello AM, Annunziatella C, Esposito A, Nicodemi M.

Chromosome Res. 2017 Mar;25(1):25-34. doi: 10.1007/s10577-016-9545-5. Epub 2017 Jan 9. Review.

PMID:
28070687
10.

Polymer models of the hierarchical folding of the Hox-B chromosomal locus.

Annunziatella C, Chiariello AM, Bianco S, Nicodemi M.

Phys Rev E. 2016 Oct;94(4-1):042402. Epub 2016 Oct 4.

PMID:
27841585
11.

Polymer Physics of the Large-Scale Structure of Chromatin.

Bianco S, Chiariello AM, Annunziatella C, Esposito A, Nicodemi M.

Methods Mol Biol. 2016;1480:201-6. doi: 10.1007/978-1-4939-6380-5_17.

PMID:
27659986
12.

Polymer physics of chromosome large-scale 3D organisation.

Chiariello AM, Annunziatella C, Bianco S, Esposito A, Nicodemi M.

Sci Rep. 2016 Jul 13;6:29775. doi: 10.1038/srep29775.

13.

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

Fraser J, Ferrai C, Chiariello AM, Schueler M, Rito T, Laudanno G, Barbieri M, Moore BL, Kraemer DC, Aitken S, Xie SQ, Morris KJ, Itoh M, Kawaji H, Jaeger I, Hayashizaki Y, Carninci P, Forrest AR; FANTOM Consortium, Semple CA, Dostie J, Pombo A, Nicodemi M.

Mol Syst Biol. 2015 Dec 23;11(12):852. doi: 10.15252/msb.20156492.

14.

Polymer models of chromatin organization.

Barbieri M, Scialdone A, Piccolo A, Chiariello AM, di Lanno C, Prisco A, Pombo A, Nicodemi M.

Front Genet. 2013 Jun 20;4:113. doi: 10.3389/fgene.2013.00113. eCollection 2013. No abstract available.

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