Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 37

1.

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria.

Cerutti F, Mallet L, Painset A, Hoede C, Moisan A, Bécavin C, Duval M, Dussurget O, Cossart P, Gaspin C, Chiapello H.

BMC Genomics. 2017 Nov 16;18(1):882. doi: 10.1186/s12864-017-4242-0.

2.

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies.

Mallet L, Bitard-Feildel T, Cerutti F, Chiapello H.

Bioinformatics. 2017 Oct 15;33(20):3283-3285. doi: 10.1093/bioinformatics/btx396.

3.

Listeriomics: an Interactive Web Platform for Systems Biology of Listeria.

Bécavin C, Koutero M, Tchitchek N, Cerutti F, Lechat P, Maillet N, Hoede C, Chiapello H, Gaspin C, Cossart P.

mSystems. 2017 Mar 14;2(2). pii: e00186-16. doi: 10.1128/mSystems.00186-16. eCollection 2017 Mar-Apr.

4.

Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue.

El Kafsi H, Loux V, Mariadassou M, Blin C, Chiapello H, Abraham AL, Maguin E, van de Guchte M.

Sci Rep. 2017 Mar 10;7:44331. doi: 10.1038/srep44331.

5.

Deciphering Genome Content and Evolutionary Relationships of Isolates from the Fungus Magnaporthe oryzae Attacking Different Host Plants.

Chiapello H, Mallet L, Guérin C, Aguileta G, Amselem J, Kroj T, Ortega-Abboud E, Lebrun MH, Henrissat B, Gendrault A, Rodolphe F, Tharreau D, Fournier E.

Genome Biol Evol. 2015 Oct 9;7(10):2896-912. doi: 10.1093/gbe/evv187.

6.

Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates.

Esquerré T, Moisan A, Chiapello H, Arike L, Vilu R, Gaspin C, Cocaign-Bousquet M, Girbal L.

BMC Genomics. 2015 Apr 9;16:275. doi: 10.1186/s12864-015-1482-8.

7.

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii.

Loux V, Mariadassou M, Almeida S, Chiapello H, Hammani A, Buratti J, Gendrault A, Barbe V, Aury JM, Deutsch SM, Parayre S, Madec MN, Chuat V, Jan G, Peterlongo P, Azevedo V, Le Loir Y, Falentin H.

BMC Genomics. 2015 Apr 15;16:296. doi: 10.1186/s12864-015-1467-7.

8.

YOC, A new strategy for pairwise alignment of collinear genomes.

Uricaru R, Michotey C, Chiapello H, Rivals E.

BMC Bioinformatics. 2015 Apr 2;16:111. doi: 10.1186/s12859-015-0530-3.

9.

Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii.

Ogier JC, Pagès S, Bisch G, Chiapello H, Médigue C, Rouy Z, Teyssier C, Vincent S, Tailliez P, Givaudan A, Gaudriault S.

Genome Biol Evol. 2014 Jun 5;6(6):1495-513. doi: 10.1093/gbe/evu119.

10.

Genome sequence of the invasive Salmonella enterica subsp. enterica serotype enteritidis strain LA5.

Grépinet O, Rossignol A, Loux V, Chiapello H, Gendrault A, Gibrat JF, Velge P, Virlogeux-Payant I.

J Bacteriol. 2012 May;194(9):2387-8. doi: 10.1128/JB.00256-12.

11.

Genome sequence of the persistent Salmonella enterica subsp. enterica serotype Senftenberg strain SS209.

Grépinet O, Boumart Z, Virlogeux-Payant I, Loux V, Chiapello H, Gendrault A, Gibrat JF, Chemaly M, Velge P.

J Bacteriol. 2012 May;194(9):2385-6. doi: 10.1128/JB.00255-12.

12.

Genes under positive selection in a model plant pathogenic fungus, Botrytis.

Aguileta G, Lengelle J, Chiapello H, Giraud T, Viaud M, Fournier E, Rodolphe F, Marthey S, Ducasse A, Gendrault A, Poulain J, Wincker P, Gout L.

Infect Genet Evol. 2012 Jul;12(5):987-96. doi: 10.1016/j.meegid.2012.02.012. Epub 2012 Mar 3.

PMID:
22406010
13.

Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach.

Ambroset C, Petit M, Brion C, Sanchez I, Delobel P, Guérin C, Chiapello H, Nicolas P, Bigey F, Dequin S, Blondin B.

G3 (Bethesda). 2011 Sep;1(4):263-81. doi: 10.1534/g3.111.000422. Epub 2011 Sep 1.

14.

Robustness assessment of whole bacterial genome segmentations.

Devillers H, Chiapello H, Schbath S, Karoui ME.

J Comput Biol. 2011 Sep;18(9):1155-65. doi: 10.1089/cmb.2011.0115.

PMID:
21899422
15.

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3.

Delorme C, Guédon E, Pons N, Cruaud C, Couloux A, Loux V, Chiapello H, Poyart C, Gautier C, Sanchez N, Almeida M, Kennedy SP, Ehrlich SD, Gibrat JF, Wincker P, Renault P.

J Bacteriol. 2011 Sep;193(18):5041-2. doi: 10.1128/JB.05416-11. Epub 2011 Jul 8.

16.

CompaGB: An open framework for genome browsers comparison.

Lacroix T, Loux V, Gendrault A, Gibrat JF, Chiapello H.

BMC Res Notes. 2011 May 4;4:133. doi: 10.1186/1756-0500-4-133.

17.

Finding candidate genes under positive selection in Non-model species: examples of genes involved in host specialization in pathogens.

Aguileta G, Lengelle J, Marthey S, Chiapello H, Rodolphe F, Gendrault A, Yockteng R, Vercken E, Devier B, Fontaine MC, Wincker P, Dossat C, Cruaud C, Couloux A, Giraud T.

Mol Ecol. 2010 Jan;19(2):292-306. doi: 10.1111/j.1365-294X.2009.04454.x. Epub 2009 Dec 8.

PMID:
20041992
18.

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Touchon M, Hoede C, Tenaillon O, Barbe V, Baeriswyl S, Bidet P, Bingen E, Bonacorsi S, Bouchier C, Bouvet O, Calteau A, Chiapello H, Clermont O, Cruveiller S, Danchin A, Diard M, Dossat C, Karoui ME, Frapy E, Garry L, Ghigo JM, Gilles AM, Johnson J, Le Bouguénec C, Lescat M, Mangenot S, Martinez-Jéhanne V, Matic I, Nassif X, Oztas S, Petit MA, Pichon C, Rouy Z, Ruf CS, Schneider D, Tourret J, Vacherie B, Vallenet D, Médigue C, Rocha EP, Denamur E.

PLoS Genet. 2009 Jan;5(1):e1000344. doi: 10.1371/journal.pgen.1000344. Epub 2009 Jan 23.

19.

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

BMC Bioinformatics. 2008 Nov 27;9:498. doi: 10.1186/1471-2105-9-498.

20.

FUNYBASE: a FUNgal phYlogenomic dataBASE.

Marthey S, Aguileta G, Rodolphe F, Gendrault A, Giraud T, Fournier E, Lopez-Villavicencio M, Gautier A, Lebrun MH, Chiapello H.

BMC Bioinformatics. 2008 Oct 27;9:456. doi: 10.1186/1471-2105-9-456.

21.

Assessing the performance of single-copy genes for recovering robust phylogenies.

Aguileta G, Marthey S, Chiapello H, Lebrun MH, Rodolphe F, Fournier E, Gendrault-Jacquemard A, Giraud T.

Syst Biol. 2008 Aug;57(4):613-27. doi: 10.1080/10635150802306527.

PMID:
18709599
22.

PERMANENT GENETIC RESOURCES: Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum.

Giraud T, Yockteng R, Marthey S, Chiapello H, Jonot O, Lopez-Villavicencio M, DE Vienne DM, Hood ME, Refregier G, Gendrault-Jacquemard A, Wincker P, Dossat C.

Mol Ecol Resour. 2008 Mar;8(2):387-92. doi: 10.1111/j.1471-8286.2007.01967.x.

PMID:
21585800
23.

Amplification biases: possible differences among deviating gene expressions.

Degrelle SA, Hennequet-Antier C, Chiapello H, Piot-Kaminski K, Piumi F, Robin S, Renard JP, Hue I.

BMC Genomics. 2008 Jan 28;9:46. doi: 10.1186/1471-2164-9-46.

24.

Identification of DNA motifs implicated in maintenance of bacterial core genomes by predictive modeling.

Halpern D, Chiapello H, Schbath S, Robin S, Hennequet-Antier C, Gruss A, El Karoui M.

PLoS Genet. 2007 Sep;3(9):1614-21.

25.

Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes.

Yockteng R, Marthey S, Chiapello H, Gendrault A, Hood ME, Rodolphe F, Devier B, Wincker P, Dossat C, Giraud T.

BMC Genomics. 2007 Aug 10;8:272.

26.

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops.

Chiapello H, Bourgait I, Sourivong F, Heuclin G, Gendrault-Jacquemard A, Petit MA, El Karoui M.

BMC Bioinformatics. 2005 Jul 12;6:171.

27.

AnovArray: a set of SAS macros for the analysis of variance of gene expression data.

Hennequet-Antier C, Chiapello H, Piot K, Degrelle S, Hue I, Renard JP, Rodolphe F, Robin S.

BMC Bioinformatics. 2005 Jun 16;6:150.

28.

Evolution of genes, evolution of species: the case of aminoacyl-tRNA synthetases.

Diaz-Lazcoz Y, Aude JC, Nitschké P, Chiapello H, Landès-Devauchelle C, Risler JL.

Mol Biol Evol. 1998 Nov;15(11):1548-61.

PMID:
12572618
29.

Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations.

Louis A, Chiapello H, Fabry C, Ollivier E, Hénaut A.

Comput Chem. 2002 Jul;26(5):511-9.

PMID:
12144179
30.

SPiD: a subtilis protein interaction database.

Hoebeke M, Chiapello H, Noirot P, Bessières P.

Bioinformatics. 2001 Dec;17(12):1209-12.

PMID:
11751229
31.

Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes.

Courtial B, Feuerbach F, Eberhard S, Rohmer L, Chiapello H, Camilleri C, Lucas H.

Mol Genet Genomics. 2001 Mar;265(1):32-42.

PMID:
11370870
32.
33.

Codon usage as a tool to predict the cellular location of eukaryotic ribosomal proteins and aminoacyl-tRNA synthetases.

Chiapello H, Ollivier E, Landès-Devauchelle C, Nitschké P, Risler JL.

Nucleic Acids Res. 1999 Jul 15;27(14):2848-51.

34.

Indigo: a World-Wide-Web review of genomes and gene functions.

Nitschké P, Guerdoux-Jamet P, Chiapello H, Faroux G, Hénaut C, Hénaut A, Danchin A.

FEMS Microbiol Rev. 1998 Oct;22(4):207-27. Review.

35.

Codon usage and gene function are related in sequences of Arabidopsis thaliana.

Chiapello H, Lisacek F, Caboche M, Hénaut A.

Gene. 1998 Mar 16;209(1-2):GC1-GC38.

PMID:
9583944
36.

An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana.

Höfte H, Desprez T, Amselem J, Chiapello H, Rouzé P, Caboche M, Moisan A, Jourjon MF, Charpenteau JL, Berthomieu P, et al.

Plant J. 1993 Dec;4(6):1051-61. Erratum in: Plant J 1994 Apr;5(4):611.

37.

[Urea cycle and purinolysis in the embryos and pregnant females of the teleost fish Poecilia reticulata].

Dépĕche J, Chiapello H.

C R Acad Sci Hebd Seances Acad Sci D. 1977 Jun 20;284(23):2415-8. French.

PMID:
409521

Supplemental Content

Loading ...
Support Center