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Attitudes of Asian Parkinson patients towards brain donation.

Khan S, Foo JYJ, Chia NSY, Agustin SJU, Neo SXM, Tay KY, Au WL, Ng ASL, Tan LCS.

Cell Tissue Bank. 2019 Oct 3. doi: 10.1007/s10561-019-09788-1. [Epub ahead of print]


Application of metagenomic shotgun sequencing to detect vector-borne pathogens in clinical blood samples.

Vijayvargiya P, Jeraldo PR, Thoendel MJ, Greenwood-Quaintance KE, Esquer Garrigos Z, Sohail MR, Chia N, Pritt BS, Patel R.

PLoS One. 2019 Oct 2;14(10):e0222915. doi: 10.1371/journal.pone.0222915. eCollection 2019.


Association of PD-L1 expression in oral squamous cell carcinoma with smoking, sex, and p53 expression.

Ahmadi N, Gao K, Chia N, Kwon MS, Palme CE, Gupta R, Clark J.

Oral Surg Oral Med Oral Pathol Oral Radiol. 2019 Aug 1. pii: S2212-4403(19)31363-X. doi: 10.1016/j.oooo.2019.07.008. [Epub ahead of print]


SNCA Rep1 promoter variability influences cognition in Parkinson's disease.

Ng ASL, Tan YJ, Zhao Y, Saffari SE, Lu Z, Ng EYL, Ng SYE, Chia NSY, Setiawan F, Xu Z, Tay KY, Au WL, Tan LCS, Tan EK.

Mov Disord. 2019 Aug;34(8):1232-1236. doi: 10.1002/mds.27768. Epub 2019 Jun 24.


Singapore SPICE: Sedation Practices in Intensive Care Evaluation in Singapore - a prospective cohort study of the public healthcare system.

Ng SY, Phua J, Wong YL, Kalyanasundaram G, Mukhopadhyay A, Lim D, Chia N, Ho BCH, Bailey MJ, Shehabi Y, Ti LK.

Singapore Med J. 2019 Jun 14. doi: 10.11622/smedj.2019055. [Epub ahead of print]


Lack of correlation of virulence gene profiles of Staphylococcus aureus bacteremia isolates with mortality.

Park KH, Greenwood-Quaintance KE, Cunningham SA, Rajagopalan G, Chia N, Jeraldo PR, Mandrekar J, Patel R.

Microb Pathog. 2019 Aug;133:103543. doi: 10.1016/j.micpath.2019.103543. Epub 2019 May 15.


Gut Microbiome and Colon Cancer: A Plausible Explanation for Dietary Contributions to Cancer.

Nelson H, Chia N.

J Am Coll Surg. 2019 Sep;229(3):231-235. doi: 10.1016/j.jamcollsurg.2019.05.003. Epub 2019 May 10. No abstract available.


A Wearable, Patient-Adaptive Freezing of Gait Detection System for Biofeedback Cueing in Parkinson's Disease.

Mikos V, Heng CH, Tay A, Yen SC, Chia NSY, Koh KML, Tan DML, Au WL.

IEEE Trans Biomed Circuits Syst. 2019 Jun;13(3):503-515. doi: 10.1109/TBCAS.2019.2914253. Epub 2019 May 1.


Extreme value analysis of gut microbial alterations in colorectal cancer.

Song SD, Jeraldo P, Chen J, Chia N.

Phys Rev E. 2019 Mar;99(3-1):032413. doi: 10.1103/PhysRevE.99.032413.


Plasma alpha-synuclein detected by single molecule array is increased in PD.

Ng ASL, Tan YJ, Lu Z, Ng EYL, Ng SYE, Chia NSY, Setiawan F, Xu Z, Tay KY, Prakash KM, Au WL, Tan EK, Tan LCS.

Ann Clin Transl Neurol. 2019 Feb 15;6(3):615-619. doi: 10.1002/acn3.729. eCollection 2019 Mar.


Gut microbiome meta-analysis reveals dysbiosis is independent of body mass index in predicting risk of obesity-associated CRC.

Greathouse KL, White JR, Padgett RN, Perrotta BG, Jenkins GD, Chia N, Chen J.

BMJ Open Gastroenterol. 2019 Feb 28;6(1):e000247. doi: 10.1136/bmjgast-2018-000247. eCollection 2019.


Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.

Yan Q, Wi YM, Thoendel MJ, Raval YS, Greenwood-Quaintance KE, Abdel MP, Jeraldo PR, Chia N, Patel R.

J Clin Microbiol. 2019 Jan 30;57(2). pii: e01182-18. doi: 10.1128/JCM.01182-18. Print 2019 Feb.


Distinct microbes, metabolites, and ecologies define the microbiome in deficient and proficient mismatch repair colorectal cancers.

Hale VL, Jeraldo P, Chen J, Mundy M, Yao J, Priya S, Keeney G, Lyke K, Ridlon J, White BA, French AJ, Thibodeau SN, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Sung J, Blekhman R, Boardman L, Larson D, Nelson H, Chia N.

Genome Med. 2018 Oct 31;10(1):78. doi: 10.1186/s13073-018-0586-6.


Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea.

Battaglioli EJ, Hale VL, Chen J, Jeraldo P, Ruiz-Mojica C, Schmidt BA, Rekdal VM, Till LM, Huq L, Smits SA, Moor WJ, Jones-Hall Y, Smyrk T, Khanna S, Pardi DS, Grover M, Patel R, Chia N, Nelson H, Sonnenburg JL, Farrugia G, Kashyap PC.

Sci Transl Med. 2018 Oct 24;10(464). pii: eaam7019. doi: 10.1126/scitranslmed.aam7019.


Higher serum triglyceride levels are associated with Parkinson's disease mild cognitive impairment.

Huang X, Ng SY, Chia NS, Acharyya S, Setiawan F, Lu Z, Tan YJ, Ng E, Wen MC, Ng ASL, Tay KY, Au WL, Tan EK, Tan LC.

Mov Disord. 2018 Dec;33(12):1970-1971. doi: 10.1002/mds.27521. Epub 2018 Oct 21. No abstract available.


Comparative evaluation of cDNA library construction approaches for RNA-Seq analysis from low RNA-content human specimens.

Masters TL, Hilker CA, Jeraldo PR, Bhagwate AV, Greenwood-Quaintance KE, Eckloff BW, Chia N, Hanssen AD, Abdel MP, Yao JZ, Jen J, Patel R.

J Microbiol Methods. 2018 Nov;154:55-62. doi: 10.1016/j.mimet.2018.10.008. Epub 2018 Oct 14.


Whole-genome sequencing for methicillin-resistant Staphylococcus aureus (MRSA) outbreak investigation in a neonatal intensive care unit.

Madigan T, Cunningham SA, Patel R, Greenwood-Quaintance KE, Barth JE, Sampathkumar P, Cole NC, Kohner PC, Colby CE, Asay GF, Fang JL, Baker CA, Heinrich AL, Fjerstad KA, Lujero MJ, Chia N, Jeraldo PR, Nelson H, Huskins WC.

Infect Control Hosp Epidemiol. 2018 Dec;39(12):1412-1418. doi: 10.1017/ice.2018.239. Epub 2018 Oct 4.


Comparison of Oral Collection Methods for Studies of Microbiota.

Vogtmann E, Chen J, Kibriya MG, Amir A, Shi J, Chen Y, Islam T, Eunes M, Ahmed A, Naher J, Rahman A, Barmon B, Knight R, Chia N, Ahsan H, Abnet CC, Sinha R.

Cancer Epidemiol Biomarkers Prev. 2019 Jan;28(1):137-143. doi: 10.1158/1055-9965.EPI-18-0312. Epub 2018 Sep 27.


Geobiology reveals how human kidney stones dissolve in vivo.

Sivaguru M, Saw JJ, Williams JC Jr, Lieske JC, Krambeck AE, Romero MF, Chia N, Schwaderer AL, Alcalde RE, Bruce WJ, Wildman DE, Fried GA, Werth CJ, Reeder RJ, Yau PM, Sanford RA, Fouke BW.

Sci Rep. 2018 Sep 13;8(1):13731. doi: 10.1038/s41598-018-31890-9.


Non-motor symptoms in early Parkinson's disease with different motor subtypes and their associations with quality of life.

Huang X, Ng SY, Chia NS, Setiawan F, Tay KY, Au WL, Tan EK, Tan LC.

Eur J Neurol. 2019 Mar;26(3):400-406. doi: 10.1111/ene.13803. Epub 2018 Sep 27.


HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.

Baheti S, Tang X, O'Brien DR, Chia N, Roberts LR, Nelson H, Boughey JC, Wang L, Goetz MP, Kocher JA, Kalari KR.

BMC Bioinformatics. 2018 Jul 17;19(1):271. doi: 10.1186/s12859-018-2260-9.


High Densities of Tumor-Associated Plasma Cells Predict Improved Prognosis in Triple Negative Breast Cancer.

Yeong J, Lim JCT, Lee B, Li H, Chia N, Ong CCH, Lye WK, Putti TC, Dent R, Lim E, Thike AA, Tan PH, Iqbal J.

Front Immunol. 2018 May 30;9:1209. doi: 10.3389/fimmu.2018.01209. eCollection 2018.


Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing.

Ivy MI, Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Hanssen AD, Abdel MP, Chia N, Yao JZ, Tande AJ, Mandrekar JN, Patel R.

J Clin Microbiol. 2018 Aug 27;56(9). pii: e00402-18. doi: 10.1128/JCM.00402-18. Print 2018 Sep.


Serum uric acid level and its association with motor subtypes and non-motor symptoms in early Parkinson's disease: PALS study.

Huang X, Ng SY, Chia NS, Acharyya S, Setiawan F, Lu ZH, Ng E, Tay KY, Au WL, Tan EK, Tan LC.

Parkinsonism Relat Disord. 2018 Oct;55:50-54. doi: 10.1016/j.parkreldis.2018.05.010. Epub 2018 May 17.


Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer.

Hale VL, Jeraldo P, Mundy M, Yao J, Keeney G, Scott N, Cheek EH, Davidson J, Greene M, Martinez C, Lehman J, Pettry C, Reed E, Lyke K, White BA, Diener C, Resendis-Antonio O, Gransee J, Dutta T, Petterson XM, Boardman L, Larson D, Nelson H, Chia N.

Methods. 2018 Oct 1;149:59-68. doi: 10.1016/j.ymeth.2018.04.024. Epub 2018 Apr 26.


Hong Kong Consensus Statements for the Management of Unresectable Hepatocellular Carcinoma.

Cheung TT, Kwok PC, Chan S, Cheung CC, Lee AS, Lee V, Cheng HC, Chia NH, Chong CCN, Lai TW, Law ALY, Luk MY, Tong CC, Yau TCC.

Liver Cancer. 2018 Mar;7(1):40-54. doi: 10.1159/000485984. Epub 2018 Jan 25.


Identification of Prosthetic Joint Infection Pathogens Using a Shotgun Metagenomics Approach.

Thoendel MJ, Jeraldo PR, Greenwood-Quaintance KE, Yao JZ, Chia N, Hanssen AD, Abdel MP, Patel R.

Clin Infect Dis. 2018 Oct 15;67(9):1333-1338. doi: 10.1093/cid/ciy303.


Enhanced Pro-Inflammatory Response of Macrophages to Interleukin-33 in an Allergic Environment.

Chia N, Kumar RK, Foster PS, Herbert C.

Int Arch Allergy Immunol. 2018;176(1):74-82. doi: 10.1159/000487573. Epub 2018 Apr 5.


Systematic Bias Introduced by Genomic DNA Template Dilution in 16S rRNA Gene-Targeted Microbiota Profiling in Human Stool Homogenates.

Multinu F, Harrington SC, Chen J, Jeraldo PR, Johnson S, Chia N, Walther-Antonio MR.

mSphere. 2018 Mar 14;3(2). pii: e00560-17. doi: 10.1128/mSphere.00560-17. eCollection 2018 Mar-Apr.


Inferring modes of evolution from colorectal cancer with residual polyp of origin.

Kim M, Druliner BR, Vasmatzis N, Bae T, Chia N, Abyzov A, Boardman LA.

Oncotarget. 2017 Dec 26;9(6):6780-6792. doi: 10.18632/oncotarget.23687. eCollection 2018 Jan 23.


Molecular characterization of colorectal adenomas with and without malignancy reveals distinguishing genome, transcriptome and methylome alterations.

Druliner BR, Wang P, Bae T, Baheti S, Slettedahl S, Mahoney D, Vasmatzis N, Xu H, Kim M, Bockol M, O'Brien D, Grill D, Warner N, Munoz-Gomez M, Kossick K, Johnson R, Mouchli M, Felmlee-Devine D, Washechek-Aletto J, Smyrk T, Oberg A, Wang J, Chia N, Abyzov A, Ahlquist D, Boardman LA.

Sci Rep. 2018 Feb 16;8(1):3161. doi: 10.1038/s41598-018-21525-4.


Challenges and recommendations for minimally resourced biobanks in tertiary Australian hospitals.

Chia N, Wen L, Lyons JG, Elliott M, Lee M, Palme CE, Clark JR, Gupta R.

ANZ J Surg. 2018 Jan;88(1-2):115-116. doi: 10.1111/ans.13909. No abstract available.


Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags.

Chen X, Johnson S, Jeraldo P, Wang J, Chia N, Kocher JA, Chen J.

Gigascience. 2018 Mar 1;7(3):1-7. doi: 10.1093/gigascience/gix129.


Microbiome at the Frontier of Personalized Medicine.

Kashyap PC, Chia N, Nelson H, Segal E, Elinav E.

Mayo Clin Proc. 2017 Dec;92(12):1855-1864. doi: 10.1016/j.mayocp.2017.10.004. Review.


A comprehensive analysis of breast cancer microbiota and host gene expression.

Thompson KJ, Ingle JN, Tang X, Chia N, Jeraldo PR, Walther-Antonio MR, Kandimalla KK, Johnson S, Yao JZ, Harrington SC, Suman VJ, Wang L, Weinshilboum RL, Boughey JC, Kocher JP, Nelson H, Goetz MP, Kalari KR.

PLoS One. 2017 Nov 30;12(11):e0188873. doi: 10.1371/journal.pone.0188873. eCollection 2017.


Metastatic small cell carcinoma with psammoma bodies: A diagnostic pitfall.

Chia N, Pang B, Nga ME.

Cytopathology. 2018 Feb;29(1):117-120. doi: 10.1111/cyt.12469. Epub 2017 Oct 5. No abstract available.


Draft Genome Sequence of Methanobrevibacter smithii Isolate WWM1085, Obtained from a Human Stool Sample.

Jennings ME, Chia N, Boardman LA, Metcalf WW.

Genome Announc. 2017 Sep 28;5(39). pii: e01055-17. doi: 10.1128/genomeA.01055-17.


Reproducibility of assessing fecal microbiota in chronic constipation.

Parthasarathy G, Chen J, Chia N, O'Connor HM, Gaskins HR, Bharucha AE.

Neurogastroenterol Motil. 2017 Oct;29(10):1-10. doi: 10.1111/nmo.13172. Epub 2017 Jul 28.


p16 expression in cutaneous squamous cell carcinoma of the head and neck is not associated with integration of high risk HPV DNA or prognosis.

Satgunaseelan L, Chia N, Suh H, Virk S, Ashford B, Lum T, Ranson M, Clark J, Gupta R.

Pathology. 2017 Aug;49(5):494-498. doi: 10.1016/j.pathol.2017.04.002. Epub 2017 Jun 26.


Reversible hemispheric hypoperfusion in two cases of SMART syndrome.

Wai K, Balabanski A, Chia N, Kleinig T.

J Clin Neurosci. 2017 Sep;43:146-148. doi: 10.1016/j.jocn.2017.05.013. Epub 2017 Jun 20.


Global metabolic interaction network of the human gut microbiota for context-specific community-scale analysis.

Sung J, Kim S, Cabatbat JJT, Jang S, Jin YS, Jung GY, Chia N, Kim PJ.

Nat Commun. 2017 Jun 6;8:15393. doi: 10.1038/ncomms15393.


Molecular epidemiology of Staphylococcus aureus bacteremia in a single large Minnesota medical center in 2015 as assessed using MLST, core genome MLST and spa typing.

Park KH, Greenwood-Quaintance KE, Uhl JR, Cunningham SA, Chia N, Jeraldo PR, Sampathkumar P, Nelson H, Patel R.

PLoS One. 2017 Jun 2;12(6):e0179003. doi: 10.1371/journal.pone.0179003. eCollection 2017.


Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects.

Lal D, Keim P, Delisle J, Barker B, Rank MA, Chia N, Schupp JM, Gillece JD, Cope EK.

Int Forum Allergy Rhinol. 2017 Jun;7(6):561-569. doi: 10.1002/alr.21934. Epub 2017 May 8.


Comparison of Whole-Genome Sequencing Methods for Analysis of Three Methicillin-Resistant Staphylococcus aureus Outbreaks.

Cunningham SA, Chia N, Jeraldo PR, Quest DJ, Johnson JA, Boxrud DJ, Taylor AJ, Chen J, Jenkins GD, Drucker TM, Nelson H, Patel R.

J Clin Microbiol. 2017 Jun;55(6):1946-1953. doi: 10.1128/JCM.00029-17. Epub 2017 Apr 12.


A Novel Prosthetic Joint Infection Pathogen, Mycoplasma salivarium, Identified by Metagenomic Shotgun Sequencing.

Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Chia N, Abdel MP, Steckelberg JM, Osmon DR, Patel R.

Clin Infect Dis. 2017 Jul 15;65(2):332-335. doi: 10.1093/cid/cix296.


Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models.

Mundy M, Mendes-Soares H, Chia N.

Bioinformatics. 2017 Aug 1;33(15):2416-2418. doi: 10.1093/bioinformatics/btx185.


Impact of Contaminating DNA in Whole-Genome Amplification Kits Used for Metagenomic Shotgun Sequencing for Infection Diagnosis.

Thoendel M, Jeraldo P, Greenwood-Quaintance KE, Yao J, Chia N, Hanssen AD, Abdel MP, Patel R.

J Clin Microbiol. 2017 Jun;55(6):1789-1801. doi: 10.1128/JCM.02402-16. Epub 2017 Mar 29.


Assessing the colonic microbiome, hydrogenogenic and hydrogenotrophic genes, transit and breath methane in constipation.

Wolf PG, Parthasarathy G, Chen J, O'Connor HM, Chia N, Bharucha AE, Gaskins HR.

Neurogastroenterol Motil. 2017 Oct;29(10):1-9. doi: 10.1111/nmo.13056. Epub 2017 Mar 13.


Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.

Vogtmann E, Chen J, Kibriya MG, Chen Y, Islam T, Eunes M, Ahmed A, Naher J, Rahman A, Amir A, Shi J, Abnet CC, Nelson H, Knight R, Chia N, Ahsan H, Sinha R.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e00361-17. doi: 10.1128/AEM.00361-17. Print 2017 May 15.


Nuclear Pore-Like Structures in a Compartmentalized Bacterium.

Sagulenko E, Nouwens A, Webb RI, Green K, Yee B, Morgan G, Leis A, Lee KC, Butler MK, Chia N, Pham UT, Lindgreen S, Catchpole R, Poole AM, Fuerst JA.

PLoS One. 2017 Feb 1;12(2):e0169432. doi: 10.1371/journal.pone.0169432. eCollection 2017.

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