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Items: 1 to 50 of 111

1.

Projection structures reveal the position of the DNA within DNA-Dps Co-crystals.

Moiseenko A, Loiko N, Tereshkina K, Danilova Y, Kovalenko V, Chertkov O, Feofanov AV, Krupyanskii YF, Sokolova OS.

Biochem Biophys Res Commun. 2019 Sep 24;517(3):463-469. doi: 10.1016/j.bbrc.2019.07.103. Epub 2019 Aug 1.

PMID:
31376942
2.

Dual Active Site in the Endolytic Transglycosylase gp144 of Bacteriophage phiKZ.

Chertkov OV, Armeev GA, Uporov IV, Legotsky SA, Sykilinda NN, Shaytan AK, Klyachko NL, Miroshnikov KA.

Acta Naturae. 2017 Jan-Mar;9(1):81-87.

3.

Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds.

Hwang C, Copeland A, Lucas S, Lapidus A, Barry K, Detter JC, Glavina Del Rio T, Hammon N, Israni S, Dalin E, Tice H, Pitluck S, Chertkov O, Brettin T, Bruce D, Han C, Schmutz J, Larimer F, Land ML, Hauser L, Kyrpides N, Mikhailova N, Ye Q, Zhou J, Richardson P, Fields MW.

Genome Announc. 2016 Nov 3;4(6). pii: e01226-16. doi: 10.1128/genomeA.01226-16.

4.

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2(T), a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.

Melton ED, Sorokin DY, Overmars L, Chertkov O, Clum A, Pillay M, Ivanova N, Shapiro N, Kyrpides NC, Woyke T, Lapidus AL, Muyzer G.

Stand Genomic Sci. 2016 Sep 8;11(1):67. doi: 10.1186/s40793-016-0184-4. eCollection 2016.

5.

Genome sequencing of 18 francisella strains to aid in assay development and testing.

Johnson SL, Daligault HE, Davenport KW, Coyne SR, Frey KG, Koroleva GI, Broomall SM, Bishop-Lilly KA, Bruce DC, Chertkov O, Freitas T, Jaissle J, Ladner JT, Rosenzweig CN, Gibbons HS, Palacios GF, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2015 Apr 30;3(2). pii: e00147-15. doi: 10.1128/genomeA.00147-15.

6.

Preparation of mononucleosomal templates for analysis of transcription with RNA polymerase using spFRET.

Kudryashova KS, Chertkov OV, Nikitin DV, Pestov NA, Kulaeva OI, Efremenko AV, Solonin AS, Kirpichnikov MP, Studitsky VM, Feofanov AV.

Methods Mol Biol. 2015;1288:395-412. doi: 10.1007/978-1-4939-2474-5_23.

7.

High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater.

Ramsay BD, Hwang C, Woo HL, Carroll SL, Lucas S, Han J, Lapidus AL, Cheng JF, Goodwin LA, Pitluck S, Peters L, Chertkov O, Held B, Detter JC, Han CS, Tapia R, Land ML, Hauser LJ, Kyrpides NC, Ivanova NN, Mikhailova N, Pagani I, Woyke T, Arkin AP, Dehal P, Chivian D, Criddle CS, Wu W, Chakraborty R, Hazen TC, Fields MW.

Genome Announc. 2015 Mar 12;3(2). pii: e00092-15. doi: 10.1128/genomeA.00092-15.

8.

Genomic sequences of six botulinum neurotoxin-producing strains representing three clostridial species illustrate the mobility and diversity of botulinum neurotoxin genes.

Smith TJ, Hill KK, Xie G, Foley BT, Williamson CHD, Foster JT, Johnson SL, Chertkov O, Teshima H, Gibbons HS, Johnsky LA, Karavis MA, Smith LA.

Infect Genet Evol. 2015 Mar;30:102-113. doi: 10.1016/j.meegid.2014.12.002. Epub 2014 Dec 6.

9.

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Enteritidis Strain SEJ.

Bishop-Lilly KA, Frey KG, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01084-14. doi: 10.1128/genomeA.01084-14.

10.

Full-Genome Assembly of Reference Strain Providencia stuartii ATCC 33672.

Frey KG, Bishop-Lilly KA, Daligault HE, Davenport KW, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Jaissle J, Koroleva GI, Ladner JT, Minogue TD, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01082-14. doi: 10.1128/genomeA.01082-14.

11.

Draft Genome Assemblies of Enterobacter aerogenes CDC 6003-71, Enterobacter cloacae CDC 442-68, and Pantoea agglomerans UA 0804-01.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01073-14. doi: 10.1128/genomeA.01073-14.

12.

Draft Genome Assemblies of Proteus mirabilis ATCC 7002 and Proteus vulgaris ATCC 49132.

Minogue TD, Daligault HE, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 23;2(5). pii: e01064-14. doi: 10.1128/genomeA.01064-14.

13.

Complete Genome Assembly of Escherichia coli ATCC 25922, a Serotype O6 Reference Strain.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00969-14. doi: 10.1128/genomeA.00969-14.

14.

Complete Genome Assembly of Enterococcus faecalis 29212, a Laboratory Reference Strain.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Chertkov O, Freitas T, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00968-14. doi: 10.1128/genomeA.00968-14.

15.

Complete Genome Assembly of Reference Strain Ochrobactrum anthropi ATCC 49687.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00962-14. doi: 10.1128/genomeA.00962-14.

16.

Draft Genome Assembly of Neisseria lactamica Type Strain A7515.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00951-14. doi: 10.1128/genomeA.00951-14.

17.

Draft Genome Assembly of Pseudomonas aeruginosa Quality Control Reference Strain Boston 41501.

Minogue TD, Daligault HE, Davenport KW, Broomall SM, Bruce DC, Chain PS, Coyne SR, Gibbons HS, Jaissle J, Chertkov O, Freitas T, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Oct 2;2(5). pii: e00960-14. doi: 10.1128/genomeA.00960-14.

18.

Complete Genome Assembly of Streptococcus pyogenes ATCC 19615, a Group A β-Hemolytic Reference Strain.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Freitas T, Frey KG, Gibbons HS, Jaissle J, Redden CL, Rosenzweig CN, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 25;2(5). pii: e00976-14. doi: 10.1128/genomeA.00976-14.

19.

Whole-genome sequences of 24 Brucella strains.

Minogue TD, Daligault HA, Davenport KW, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Chertkov O, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Xu Y, Johnson SL.

Genome Announc. 2014 Sep 18;2(5). pii: e00915-14. doi: 10.1128/genomeA.00915-14.

20.

Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment.

Breider S, Teshima H, Petersen J, Chertkov O, Dalingault H, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Tindall BJ, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T.

Stand Genomic Sci. 2014 Jan 25;9(3):687-703. doi: 10.4056/sigs.3828824. eCollection 2014 Jun 15.

21.

Complete genome sequence of Mesorhizobium ciceri bv. biserrulae type strain (WSM1271(T)).

Nandasena K, Yates R, Tiwari R, O'Hara G, Howieson J, Ninawi M, Chertkov O, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Liolios K, Pati A, Copeland A, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Reeve W.

Stand Genomic Sci. 2013 Dec 31;9(3):462-72. doi: 10.4056/sigs.4458283. eCollection 2014 Jun 15.

22.

The mitochondrial and chloroplast genomes of the haptophyte Chrysochromulina tobin contain unique repeat structures and gene profiles.

Hovde BT, Starkenburg SR, Hunsperger HM, Mercer LD, Deodato CR, Jha RK, Chertkov O, Monnat RJ Jr, Cattolico RA.

BMC Genomics. 2014 Jul 17;15:604. doi: 10.1186/1471-2164-15-604.

23.

Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production.

Khanna N, Ghosh AK, Huntemann M, Deshpande S, Han J, Chen A, Kyrpides N, Mavrommatis K, Szeto E, Markowitz V, Ivanova N, Pagani I, Pati A, Pitluck S, Nolan M, Woyke T, Teshima H, Chertkov O, Daligault H, Davenport K, Gu W, Munk C, Zhang X, Bruce D, Detter C, Xu Y, Quintana B, Reitenga K, Kunde Y, Green L, Erkkila T, Han C, Brambilla EM, Lang E, Klenk HP, Goodwin L, Chain P, Das D.

Stand Genomic Sci. 2013 Dec 15;9(2):359-69. doi: 10.4056/sigs.4348035. eCollection 2013 Dec 20.

24.

Complete genome sequence of Mesorhizobium opportunistum type strain WSM2075(T.).

Reeve W, Nandasena K, Yates R, Tiwari R, O'Hara G, Ninawi M, Chertkov O, Goodwin L, Bruce D, Detter C, Tapia R, Han S, Woyke T, Pitluck S, Nolan M, Land M, Copeland A, Liolios K, Pati A, Mavromatis K, Markowitz V, Kyrpides N, Ivanova N, Goodwin L, Meenakshi U, Howieson J.

Stand Genomic Sci. 2013 Dec 15;9(2):294-303. doi: 10.4056/sigs.4538264. eCollection 2013 Dec 20.

25.

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes.

Starkenburg SR, Kwon KJ, Jha RK, McKay C, Jacobs M, Chertkov O, Twary S, Rocap G, Cattolico RA.

BMC Genomics. 2014 Mar 19;15:212. doi: 10.1186/1471-2164-15-212.

26.

Genome sequence of Phaeobacter daeponensis type strain (DSM 23529(T)), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

Dogs M, Teshima H, Petersen J, Fiebig A, Chertkov O, Dalingault H, Chen A, Pati A, Goodwin LA, Chain P, Detter JC, Ivanova N, Lapidus A, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T.

Stand Genomic Sci. 2013 Oct 3;9(1):142-59. doi: 10.4056/sigs.4287962. eCollection 2013 Oct 16.

27.

Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336(T)), a representative of the Roseobacter clade.

Buddruhs N, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Gronow S, Kyrpides NC, Woyke T, Göker M, Brinkhoff T, Klenk HP.

Stand Genomic Sci. 2013 Oct 4;9(1):128-41. doi: 10.4056/sigs.4297965. eCollection 2013 Oct 16.

28.

Non-contiguous finished genome sequence of plant-growth promoting Serratia proteamaculans S4.

Neupane S, Goodwin LA, Högberg N, Kyrpides NC, Alström S, Bruce D, Quintana B, Munk C, Daligault H, Teshima H, Davenport K, Reitenga K, Green L, Chain P, Erkkila T, Gu W, Zhang X, Xu Y, Kunde Y, Chertkov O, Han J, Han C, Detter JC, Ivanova N, Pati A, Chen A, Szeto E, Mavromatis K, Huntemann M, Nolan M, Pitluck S, Deshpande S, Markowitz V, Pagani I, Klenk HP, Woyke T, Finlay RD.

Stand Genomic Sci. 2013 Jul 30;8(3):441-9. doi: 10.4056/sigs.4027757. eCollection 2013 Jul 30.

29.

Genome sequence of Phaeobacter caeruleus type strain (DSM 24564(T)), a surface-associated member of the marine Roseobacter clade.

Beyersmann PG, Chertkov O, Petersen J, Fiebig A, Chen A, Pati A, Ivanova N, Lapidus A, Goodwin LA, Chain P, Detter JC, Rohde M, Gronow S, Kyrpides NC, Woyke T, Simon M, Göker M, Klenk HP, Brinkhoff T.

Stand Genomic Sci. 2013 Jul 30;8(3):403-19. doi: 10.4056/sigs.3927623. eCollection 2013 Jul 30.

30.

Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy.

Meier-Kolthoff JP, Hahnke RL, Petersen J, Scheuner C, Michael V, Fiebig A, Rohde C, Rohde M, Fartmann B, Goodwin LA, Chertkov O, Reddy T, Pati A, Ivanova NN, Markowitz V, Kyrpides NC, Woyke T, Göker M, Klenk HP.

Stand Genomic Sci. 2014 Dec 8;9:2. doi: 10.1186/1944-3277-9-2. eCollection 2014.

31.

Complete Genome Sequence of Bacillus thuringiensis Serovar Israelensis Strain HD-789.

Doggett NA, Stubben CJ, Chertkov O, Bruce DC, Detter JC, Johnson SL, Han CS.

Genome Announc. 2013 Dec 26;1(6). pii: e01023-13. doi: 10.1128/genomeA.01023-13.

32.

Complete Genome Sequence of Micromonospora Strain L5, a Potential Plant-Growth-Regulating Actinomycete, Originally Isolated from Casuarina equisetifolia Root Nodules.

Hirsch AM, Alvarado J, Bruce D, Chertkov O, De Hoff PL, Detter JC, Fujishige NA, Goodwin LA, Han J, Han S, Ivanova N, Land ML, Lum MR, Milani-Nejad N, Nolan M, Pati A, Pitluck S, Tran SS, Woyke T, Valdés M.

Genome Announc. 2013 Sep 26;1(5). pii: e00759-13. doi: 10.1128/genomeA.00759-13.

33.

Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics.

Emerson D, Field EK, Chertkov O, Davenport KW, Goodwin L, Munk C, Nolan M, Woyke T.

Front Microbiol. 2013 Sep 12;4:254. doi: 10.3389/fmicb.2013.00254. eCollection 2013.

34.

[Molecular mechanisms of transcription through a nuclesome by RNA polymerase II].

Kulaeva OI, Maliuchenko NV, Nikitin DV, Demidenko AV, Chertkov OV, Efimova NS, Kirpichnikov MP, Studitskiĭ VM.

Mol Biol (Mosk). 2013 Sep-Oct;47(5):754-66. Review. Russian.

35.

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (H(T)), and emendation of the species Turneriella parva.

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Land M, Pan C, Rohde M, Gronow S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Woyke T, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 May 25;8(2):228-38. doi: 10.4056/sigs.3617113. eCollection 2013.

36.

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5(T)).

Stackebrandt E, Chertkov O, Lapidus A, Nolan M, Lucas S, Han C, Cheng JF, Tapia R, Goodwin LA, Bruce D, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Huntemann M, Pati A, Chen A, Palaniappan K, Rohde M, Tindall BJ, Göker M, Woyke T, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Klenk HP, Kyrpides NC.

Stand Genomic Sci. 2013 Apr 15;8(1):37-46. doi: 10.4056/sigs.3537045. eCollection 2013 Apr 15.

37.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.

Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS.

Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14.

38.

Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.

Mead DA, Lucas S, Copeland A, Lapidus A, Cheng JF, Bruce DC, Goodwin LA, Pitluck S, Chertkov O, Zhang X, Detter JC, Han CS, Tapia R, Land M, Hauser LJ, Chang YJ, Kyrpides NC, Ivanova NN, Ovchinnikova G, Woyke T, Brumm C, Hochstein R, Schoenfeld T, Brumm P.

Stand Genomic Sci. 2012 Jul 30;6(3):381-400. doi: 10.4056/sigs.2605792. Epub 2012 Jul 27.

39.

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmicute Sulfobacillus acidophilus type strain (NAL(T)).

Anderson I, Chertkov O, Chen A, Saunders E, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Palaniappan K, Land M, Pan C, Rohde M, Pukall R, Göker M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Mavromatis K.

Stand Genomic Sci. 2012 Jul 30;6(3):1-13. doi: 10.4056/sigs.2736042. Epub 2012 Jul 20.

40.

The genome of Pelobacter carbinolicus reveals surprising metabolic capabilities and physiological features.

Aklujkar M, Haveman SA, DiDonato R Jr, Chertkov O, Han CS, Land ML, Brown P, Lovley DR.

BMC Genomics. 2012 Dec 10;13:690. doi: 10.1186/1471-2164-13-690.

41.

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium.

PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1.

42.

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1).

Mavromatis K, Chertkov O, Lapidus A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Bruce D, Goodwin LA, Pitluck S, Huntemann M, Liolios K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Brambilla EM, Rohde M, Spring S, Göker M, Detter JC, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2012 May 25;6(2):210-9. doi: 10.4056/sigs.2816096. Epub 2012 May 4.

43.

Complete genome sequence of Serratia plymuthica strain AS12.

Neupane S, Finlay RD, Alström S, Goodwin L, Kyrpides NC, Lucas S, Lapidus A, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Chertkov O, Han J, Han C, Tapia R, Detter JC, Land M, Hauser L, Cheng JF, Ivanova N, Pagani I, Klenk HP, Woyke T, Högberg N.

Stand Genomic Sci. 2012 May 25;6(2):165-73. doi: 10.4056/sigs.2705996. Epub 2012 May 1.

44.

Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici.

Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM, Bharti AK, Donahoo RS, Finley S, Huitema E, Hulvey J, Platt D, Salamov A, Savidor A, Sharma R, Stam R, Storey D, Thines M, Win J, Haas BJ, Dinwiddie DL, Jenkins J, Knight JR, Affourtit JP, Han CS, Chertkov O, Lindquist EA, Detter C, Grigoriev IV, Kamoun S, Kingsmore SF.

Mol Plant Microbe Interact. 2012 Oct;25(10):1350-60. doi: 10.1094/MPMI-02-12-0028-R.

45.

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuricurvum kujiense type strain (YK-1(T)).

Han C, Kotsyurbenko O, Chertkov O, Held B, Lapidus A, Nolan M, Lucas S, Hammon N, Deshpande S, Cheng JF, Tapia R, Goodwin LA, Pitluck S, Liolios K, Pagani I, Ivanova N, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Brambilla EM, Rohde M, Spring S, Sikorski J, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Detter JC.

Stand Genomic Sci. 2012 Mar 19;6(1):94-103. doi: 10.4056/sigs.2456004. Epub 2012 Mar 5.

46.

Complete genome sequence of Paenibacillus sp. strain JDR-2.

Chow V, Nong G, St John FJ, Rice JD, Dickstein E, Chertkov O, Bruce D, Detter C, Brettin T, Han J, Woyke T, Pitluck S, Nolan M, Pati A, Martin J, Copeland A, Land ML, Goodwin L, Jones JB, Ingram LO, Shanmugam KT, Preston JF.

Stand Genomic Sci. 2012 Mar 19;6(1):1-10. doi: 10.4056/sigs.2374349. Epub 2012 Mar 5.

47.

Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.

Rhee MS, Moritz BE, Xie G, Glavina Del Rio T, Dalin E, Tice H, Bruce D, Goodwin L, Chertkov O, Brettin T, Han C, Detter C, Pitluck S, Land ML, Patel M, Ou M, Harbrucker R, Ingram LO, Shanmugam KT.

Stand Genomic Sci. 2011 Dec 31;5(3):331-40. doi: 10.4056/sigs.2365342. Epub 2011 Dec 22.

48.

Complete genome sequence of Hirschia baltica type strain (IFAM 1418(T)).

Chertkov O, Brown PJ, Kysela DT, de Pedro MA, Lucas S, Copeland A, Lapidus A, Del Rio TG, Tice H, Bruce D, Goodwin L, Pitluck S, Detter JC, Han C, Larimer F, Chang YJ, Jeffries CD, Land M, Hauser L, Kyrpides NC, Ivanova N, Ovchinnikova G, Tindall BJ, Göker M, Klenk HP, Brun YV.

Stand Genomic Sci. 2011 Dec 31;5(3):287-97. doi: 10.4056/sigs.2205004. Epub 2011 Dec 23.

49.

[The properties of the Pseudomonas aeruginosa bacteriophage phiPMG1].

Chertkov OV, Chuprov-Netochin RN, Legotskiĭ SV, Sykilinda NN, Shneider MM, Ivanova MA, Pleteneva EA, Shaburova OV, Burkal'tseva MB, Kostriukova ES, Lazarev VN, Kliachko NL, Miroshnikov KA.

Bioorg Khim. 2011 Nov-Dec;37(6):807-14. Russian.

PMID:
22497079
50.

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.

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