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Single-Cell Transcriptomics Reveals Spatial and Temporal Turnover of Keratinocyte Differentiation Regulators.

Finnegan A, Cho RJ, Luu A, Harirchian P, Lee J, Cheng JB, Song JS.

Front Genet. 2019 Sep 3;10:775. doi: 10.3389/fgene.2019.00775. eCollection 2019.


Hierarchically porous SiO2/polyurethane foam composites towards excellent thermal insulating, flame-retardant and smoke-suppressant performances.

Li ME, Wang SX, Han LX, Yuan WJ, Cheng JB, Zhang AN, Zhao HB, Wang YZ.

J Hazard Mater. 2019 Aug 5;375:61-69. doi: 10.1016/j.jhazmat.2019.04.065. Epub 2019 Apr 22.


Analysis of the Yp11.2 Deletion Region of Phenotypically Normal Males with an AMELY-Null Allele in the Chinese Han Population.

Cheng JB, Liu Q, Long F, Huang DX, Yi SH.

Genet Test Mol Biomarkers. 2019 May;23(5):359-362. doi: 10.1089/gtmb.2018.0231. Epub 2019 Apr 17.


Tetrel Bond between 6-OTX₃-Fulvene and NH₃: Substituents and Aromaticity.

Hou MC, Yang SB, Li QZ, Cheng JB, Li HB, Liu SF.

Molecules. 2018 Dec 20;24(1). pii: E10. doi: 10.3390/molecules24010010.


A20 and ABIN1 Suppression of a Keratinocyte Inflammatory Program with a Shared Single-Cell Expression Signature in Diverse Human Rashes.

Harirchian P, Lee J, Hilz S, Sedgewick AJ, Perez White BE, Kesling MJ, Mully T, Golovato J, Gray M, Mauro TM, Purdom E, Kim EA, Sbitany H, Bhutani T, Vaske CJ, Benz SC, Cho RJ, Cheng JB.

J Invest Dermatol. 2019 Jun;139(6):1264-1273. doi: 10.1016/j.jid.2018.10.046. Epub 2018 Dec 10.


Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.

Cheng JB, Sedgewick AJ, Finnegan AI, Harirchian P, Lee J, Kwon S, Fassett MS, Golovato J, Gray M, Ghadially R, Liao W, Perez White BE, Mauro TM, Mully T, Kim EA, Sbitany H, Neuhaus IM, Grekin RC, Yu SS, Gray JW, Purdom E, Paus R, Vaske CJ, Benz SC, Song JS, Cho RJ.

Cell Rep. 2018 Oct 23;25(4):871-883. doi: 10.1016/j.celrep.2018.09.006.


Carbon Excess C3N: A Potential Candidate as Li-Ion Battery Material.

Liu Q, Xiao B, Cheng JB, Li YC, Li QZ, Li WZ, Xu XF, Yu XF.

ACS Appl Mater Interfaces. 2018 Oct 31;10(43):37135-37141. doi: 10.1021/acsami.8b14183. Epub 2018 Oct 18.


[L-carnitine combined with coenzyme Q10 for idiopathic oligoasthenozoospermia: A double-blind randomized controlled trial].

Cheng JB, Zhu J, Ni F, Jiang H.

Zhonghua Nan Ke Xue. 2018 Janurary;24(1):33-38. Chinese.


Nonlinear optical properties of aluminum nitride nanotubes doped by excess electron: a first principle study.

Yuan TM, Liu SL, Liu ZB, Wang X, Li WZ, Cheng JB, Li QZ.

J Mol Model. 2018 Jul 14;24(8):205. doi: 10.1007/s00894-018-3750-4.


Emergence and Evolution of Mutational Hotspots in Sun-Damaged Skin.

Cheng JB, Cho RJ.

J Invest Dermatol. 2018 Jan;138(1):16-17. doi: 10.1016/j.jid.2017.09.007.


Phase II evaluation of anti-MAdCAM antibody PF-00547659 in the treatment of Crohn's disease: report of the OPERA study.

Sandborn WJ, Lee SD, Tarabar D, Louis E, Klopocka M, Klaus J, Reinisch W, Hébuterne X, Park DI, Schreiber S, Nayak S, Ahmad A, Banerjee A, Brown LS, Cataldi F, Gorelick KJ, Cheng JB, Hassan-Zahraee M, Clare R, D'Haens GR.

Gut. 2018 Oct;67(10):1824-1835. doi: 10.1136/gutjnl-2016-313457. Epub 2017 Oct 5.


Anti-MAdCAM Antibody Increases ß7+ T Cells and CCR9 Gene Expression in the Peripheral Blood of Patients With Crohn's Disease.

Hassan-Zahraee M, Banerjee A, Cheng JB, Zhang W, Ahmad A, Page K, von Schack D, Zhang B, Martin SW, Nayak S, Reddy P, Xi L, Neubert H, Fernandez Ocana M, Gorelick K, Clare R, Vincent M, Cataldi F, Hung K.

J Crohns Colitis. 2018 Jan 5;12(1):77-86. doi: 10.1093/ecco-jcc/jjx121.


[Application of Real-time Quantitative PCR in Detecting Atypical BCR/ABL mRNA Transcripts in Chronic Myelocytic Leukemia].

Zou Y, DU C, Chen HM, Guo FX, Cheng JB, Tang YY, Wu W, Xia CQ.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2017 Aug;25(4):1016-1021. doi: 10.7534/j.issn.1009-2137.2017.04.010. Chinese.


Penta-graphene: A Promising Anode Material as the Li/Na-Ion Battery with Both Extremely High Theoretical Capacity and Fast Charge/Discharge Rate.

Xiao B, Li YC, Yu XF, Cheng JB.

ACS Appl Mater Interfaces. 2016 Dec 28;8(51):35342-35352. doi: 10.1021/acsami.6b12727. Epub 2016 Dec 15.


Atomic Insight into the Origin of Various Operation Voltages of Cation-Based Resistance Switches.

Xiao B, Yu XF, Cheng JB.

ACS Appl Mater Interfaces. 2016 Nov 23;8(46):31978-31985. Epub 2016 Nov 8.


Induced Pluripotent Stem Cell Differentiation and Three-Dimensional Tissue Formation Attenuate Clonal Epigenetic Differences in Trichohyalin.

Petrova A, Capalbo A, Jacquet L, Hazelwood-Smith S, Dafou D, Hobbs C, Arno M, Farcomeni A, Devito L, Badraiq H, Simpson M, McGrath JA, Di WL, Cheng JB, Mauro TM, Ilic D.

Stem Cells Dev. 2016 Sep 15;25(18):1366-75. doi: 10.1089/scd.2016.0156. Epub 2016 Aug 30.


Theoretical study of the cooperative effects between the triel bond and the pnicogen bond in BF3···NCXH2···Y (X = P, As, Sb; Y = H2O, NH3) complexes.

Liu MX, Zhuo HY, Li QZ, Li WZ, Cheng JB.

J Mol Model. 2016 Jan;22(1):10. doi: 10.1007/s00894-015-2882-z. Epub 2015 Dec 16.


Protic vs Aprotic Solvent Effect on Proton Transfer in 3-Hydroxyisoquinoline: A Theoretical Study.

Xiao B, Li YC, Yu XF, Cheng JB.

J Phys Chem A. 2015 Dec 10;119(49):11882-90. doi: 10.1021/acs.jpca.5b10180. Epub 2015 Dec 1.


Monoclonal antibody against macrophage colony-stimulating factor suppresses circulating monocytes and tissue macrophage function but does not alter cell infiltration/activation in cutaneous lesions or clinical outcomes in patients with cutaneous lupus erythematosus.

Masek-Hammerman K, Peeva E, Ahmad A, Menon S, Afsharvand M, Peng Qu R, Cheng JB, Syed J, Zhan Y, O'Neil SP, Pleasic-Williams S, Cox LA, Beidler D.

Clin Exp Immunol. 2016 Feb;183(2):258-70. doi: 10.1111/cei.12705. Epub 2015 Nov 9.


Effects of heat stress on serum insulin, adipokines, AMP-activated protein kinase, and heat shock signal molecules in dairy cows.

Min L, Cheng JB, Shi BL, Yang HJ, Zheng N, Wang JQ.

J Zhejiang Univ Sci B. 2015 Jun;16(6):541-8. doi: 10.1631/jzus.B1400341.


Urine and serum metabolomic profiling reveals that bile acids and carnitine may be potential biomarkers of primary biliary cirrhosis.

Tang YM, Wang JP, Bao WM, Yang JH, Ma LK, Yang J, Chen H, Xu Y, Yang LH, Li W, Zhu YP, Cheng JB.

Int J Mol Med. 2015 Aug;36(2):377-85. doi: 10.3892/ijmm.2015.2233. Epub 2015 Jun 3.


Monolayer Ti₂CO₂: A Promising Candidate for NH₃ Sensor or Capturer with High Sensitivity and Selectivity.

Yu XF, Li YC, Cheng JB, Liu ZB, Li QZ, Li WZ, Yang X, Xiao B.

ACS Appl Mater Interfaces. 2015 Jun 24;7(24):13707-13. doi: 10.1021/acsami.5b03737. Epub 2015 Jun 12.


Epigenetic and transcriptional determinants of the human breast.

Gascard P, Bilenky M, Sigaroudinia M, Zhao J, Li L, Carles A, Delaney A, Tam A, Kamoh B, Cho S, Griffith M, Chu A, Robertson G, Cheung D, Li I, Heravi-Moussavi A, Moksa M, Mingay M, Hussainkhel A, Davis B, Nagarajan RP, Hong C, Echipare L, O'Geen H, Hangauer MJ, Cheng JB, Neel D, Hu D, McManus MT, Moore R, Mungall A, Ma Y, Plettner P, Ziv E, Wang T, Farnham PJ, Jones SJ, Marra MA, Tlsty TD, Costello JF, Hirst M.

Nat Commun. 2015 Feb 18;6:6351. doi: 10.1038/ncomms7351.


Transcription restores DNA repair to heterochromatin, determining regional mutation rates in cancer genomes.

Zheng CL, Wang NJ, Chung J, Moslehi H, Sanborn JZ, Hur JS, Collisson EA, Vemula SS, Naujokas A, Chiotti KE, Cheng JB, Fassihi H, Blumberg AJ, Bailey CV, Fudem GM, Mihm FG, Cunningham BB, Neuhaus IM, Liao W, Oh DH, Cleaver JE, LeBoit PE, Costello JF, Lehmann AR, Gray JW, Spellman PT, Arron ST, Huh N, Purdom E, Cho RJ.

Cell Rep. 2014 Nov 20;9(4):1228-34. doi: 10.1016/j.celrep.2014.10.031. Epub 2014 Nov 20.


Regulatory network decoded from epigenomes of surface ectoderm-derived cell types.

Lowdon RF, Zhang B, Bilenky M, Mauro T, Li D, Gascard P, Sigaroudinia M, Farnham PJ, Bastian BC, Tlsty TD, Marra MA, Hirst M, Costello JF, Wang T, Cheng JB.

Nat Commun. 2014 Nov 25;5:5442. doi: 10.1038/ncomms6442.


Tetrel-hydride interaction between XH₃F (X = C, Si, Ge, Sn) and HM (M = Li, Na, BeH, MgH).

Li QZ, Zhuo HY, Li HB, Liu ZB, Li WZ, Cheng JB.

J Phys Chem A. 2015 Mar 19;119(11):2217-24. doi: 10.1021/jp503735u. Epub 2014 Jul 16.


Lymphovascular space invasion and tumor differentiation are predictors for postoperative recurrence in patients with pathological stage I nonsmall cell lung cancer.

Chen YY, Huang TW, Tsai WC, Lin LF, Cheng JB, Lee SC, Chang H.

J Chin Med Assoc. 2014 Aug;77(8):416-21. doi: 10.1016/j.jcma.2014.05.008. Epub 2014 Jul 12.


Effects of rumen-protected γ-aminobutyric acid on performance and nutrient digestibility in heat-stressed dairy cows.

Cheng JB, Bu DP, Wang JQ, Sun XZ, Pan L, Zhou LY, Liu W.

J Dairy Sci. 2014 Sep;97(9):5599-607. doi: 10.3168/jds.2013-6797. Epub 2014 Jul 11.


ALEA: a toolbox for allele-specific epigenomics analysis.

Younesy H, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ.

Bioinformatics. 2014 Apr 15;30(8):1172-1174. Epub 2013 Dec 26.


Risk factors of postoperative recurrences in patients with clinical stage I NSCLC.

Chen YY, Huang TW, Tsai WC, Lin LF, Cheng JB, Chang H, Lee SC.

World J Surg Oncol. 2014 Jan 10;12:10. doi: 10.1186/1477-7819-12-10.


Simultaneous determination of aflatoxin M1, ochratoxin A, zearalenone and α-zearalenol in milk by UHPLC-MS/MS.

Huang LC, Zheng N, Zheng BQ, Wen F, Cheng JB, Han RW, Xu XM, Li SL, Wang JQ.

Food Chem. 2014 Mar 1;146:242-9. doi: 10.1016/j.foodchem.2013.09.047. Epub 2013 Sep 18.


Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.

Stergachis AB, Neph S, Reynolds A, Humbert R, Miller B, Paige SL, Vernot B, Cheng JB, Thurman RE, Sandstrom R, Haugen E, Heimfeld S, Murry CE, Akey JM, Stamatoyannopoulos JA.

Cell. 2013 Aug 15;154(4):888-903. doi: 10.1016/j.cell.2013.07.020.


Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.


Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm.

Zhang B, Zhou Y, Lin N, Lowdon RF, Hong C, Nagarajan RP, Cheng JB, Li D, Stevens M, Lee HJ, Xing X, Zhou J, Sundaram V, Elliott G, Gu J, Shi T, Gascard P, Sigaroudinia M, Tlsty TD, Kadlecek T, Weiss A, O'Geen H, Farnham PJ, Maire CL, Ligon KL, Madden PA, Tam A, Moore R, Hirst M, Marra MA, Zhang B, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1522-40. doi: 10.1101/gr.156539.113. Epub 2013 Jun 26.


pSTAT3: a target biomarker to study the pharmacology of the anti-IL-21R antibody ATR-107 in human whole blood.

Zhu M, Pleasic-Williams S, Lin TH, Wunderlich DA, Cheng JB, Masferrer JL.

J Transl Med. 2013 Mar 14;11:65. doi: 10.1186/1479-5876-11-65.


Enhancement of iodine-hydride interaction by substitution and cooperative effects in NCX-NCI-HMY complexes.

Li QZ, Sun L, Liu XF, Li WZ, Cheng JB, Zeng YL.

Chemphyschem. 2012 Dec 7;13(17):3997-4002. doi: 10.1002/cphc.201200430. Epub 2012 Sep 3.


Structures, properties and nature of DMSO-XY (XY=ClF and BrF) complexes: redshift and blueshift of S=O stretch.

Li QZ, Xu WR, Li R, Liu XF, Li WZ, Cheng JB.

Spectrochim Acta A Mol Biomol Spectrosc. 2012 Nov;97:600-5. doi: 10.1016/j.saa.2012.07.017. Epub 2012 Jul 16.


Substitution, cooperative, and solvent effects on π pnicogen bonds in the FH(2)P and FH(2)As complexes.

An XL, Li R, Li QZ, Liu XF, Li WZ, Cheng JB.

J Mol Model. 2012 Sep;18(9):4325-32. doi: 10.1007/s00894-012-1445-9. Epub 2012 May 9.


Pnicogen-hydride interaction between FH2X (X = P and As) and HM (M = ZnH, BeH, MgH, Li, and Na).

Li QZ, Li R, Liu XF, Li WZ, Cheng JB.

J Phys Chem A. 2012 Mar 15;116(10):2547-53. doi: 10.1021/jp211435b. Epub 2012 Feb 29.


Concerted interaction between pnicogen and halogen bonds in XCl-FH2P-NH3 (X=F, OH, CN, NC, and FCC).

Li QZ, Li R, Liu XF, Li WZ, Cheng JB.

Chemphyschem. 2012 Apr 10;13(5):1205-12. doi: 10.1002/cphc.201100860. Epub 2012 Feb 9.


Prediction and characterization of a chalcogen-hydride interaction with metal hybrids as an electron donor in F2CS-HM and F2CSe-HM (M = Li, Na, BeH, MgH, MgCH3) complexes.

Li QZ, Qi H, Li R, Liu XF, Li WZ, Cheng JB.

Phys Chem Chem Phys. 2012 Mar 7;14(9):3025-30. doi: 10.1039/c2cp23664h. Epub 2012 Jan 30.


Genetics and epigenetics of the skin meet deep sequence.

Cheng JB, Cho RJ.

J Invest Dermatol. 2012 Mar;132(3 Pt 2):923-32. doi: 10.1038/jid.2011.436. Epub 2012 Jan 12. Review.


The structure, properties, and nature of HArF-HOX (X = F, Cl, Br) complex: an ab initio study and an unusual short hydrogen bond.

Li QZ, Zhao JL, Jing B, Li R, Li WZ, Cheng JB.

J Comput Chem. 2011 Aug;32(11):2432-40. doi: 10.1002/jcc.21826. Epub 2011 May 19.


The innate immune response, clinical outcomes, and ex vivo HCV antiviral efficacy of a TLR7 agonist (PF-4878691).

Fidock MD, Souberbielle BE, Laxton C, Rawal J, Delpuech-Adams O, Corey TP, Colman P, Kumar V, Cheng JB, Wright K, Srinivasan S, Rana K, Craig C, Horscroft N, Perros M, Westby M, Webster R, van der Ryst E.

Clin Pharmacol Ther. 2011 Jun;89(6):821-9. doi: 10.1038/clpt.2011.60. Epub 2011 Mar 30.


Some measures for making halogen bonds stronger than hydrogen bonds in H2CS-HOX (X = F, Cl, and Br) complexes.

Li QZ, Jing B, Li R, Liu ZB, Li WZ, Luan F, Cheng JB, Gong BA, Sun JZ.

Phys Chem Chem Phys. 2011 Feb 14;13(6):2266-71. doi: 10.1039/c0cp01543a. Epub 2010 Dec 1.


Push-pull electron effects of the complexant in a Li atom doped molecule with electride character: a new strategy to enhance the first hyperpolarizability.

Liu ZB, Zhou ZJ, Li Y, Li ZR, Wang R, Li QZ, Li Y, Jia FY, Wang YF, Li ZJ, Cheng JB, Sun CC.

Phys Chem Chem Phys. 2010 Sep 21;12(35):10562-8. doi: 10.1039/c004262e. Epub 2010 Jul 7.


[Theoretical study of geometrical structures and properties of several replaced mercapto molecules].

Liu HC, Cheng JB, Li WZ, Zhao B.

Guang Pu Xue Yu Guang Pu Fen Xi. 2010 Feb;30(2):368-71. Chinese.


A new unconventional halogen bond C-X...H-M between HCCX (X = Cl and Br) and HMH (M = Be and Mg): an ab initio study.

Li QZ, Dong X, Jing B, Li WZ, Cheng JB, Gong BA, Yu ZW.

J Comput Chem. 2010 Jun;31(8):1662-9. doi: 10.1002/jcc.21451.


Theoretical study on HBO+ and HOB+ cations using multiconfiguration second-order perturbation theory.

Li WZ, Cheng JB, Li QZ, Gong BA, Sun JZ.

J Comput Chem. 2010 May;31(7):1397-401. doi: 10.1002/jcc.21424.


Validation of a standardized method for enumerating circulating endothelial cells and progenitors: flow cytometry and molecular and ultrastructural analyses.

Mancuso P, Antoniotti P, Quarna J, Calleri A, Rabascio C, Tacchetti C, Braidotti P, Wu HK, Zurita AJ, Saronni L, Cheng JB, Shalinsky DR, Heymach JV, Bertolini F.

Clin Cancer Res. 2009 Jan 1;15(1):267-73. doi: 10.1158/1078-0432.CCR-08-0432. Erratum in: Clin Cancer Res. 2015 Jun 1;21(11):2652.

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