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Items: 21


Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer.

Orellana LH, Hatt JK, Iyer R, Chourey K, Hettich RL, Spain JC, Yang WH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT.

Sci Rep. 2019 Nov 26;9(1):17630. doi: 10.1038/s41598-019-53679-0.


Effects of triclosan and triclocarban on denitrification and N2O emissions in paddy soil.

Chen S, Chee-Sanford JC, Yang WH, Sanford RA, Chen J, Yan X, Shan J.

Sci Total Environ. 2019 Dec 10;695:133782. doi: 10.1016/j.scitotenv.2019.133782. Epub 2019 Aug 7.


Influence of the geophagous earthworm Aporrectodea sp. on fate of bisphenol A and a branched 4-nonylphenol isomer in soil.

Shan J, Corvini PF, Schäffer A, Chee-Sanford JC, Yan X, Ji R.

Sci Total Environ. 2019 Nov 25;693:133574. doi: 10.1016/j.scitotenv.2019.07.380. Epub 2019 Jul 23.


Water-soluble exudates from seeds of Kochia scoparia exhibit antifungal activity against Colletotrichum graminicola.

Houlihan AJ, Conlin P, Chee-Sanford JC.

PLoS One. 2019 Jun 19;14(6):e0218104. doi: 10.1371/journal.pone.0218104. eCollection 2019.


Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization.

Orellana LH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT.

Appl Environ Microbiol. 2018 Jan 2;84(2). pii: e01646-17. doi: 10.1128/AEM.01646-17. Print 2018 Jan 15.


Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils.

Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Löffler FE.

Appl Environ Microbiol. 2016 May 2;82(10):2919-2928. doi: 10.1128/AEM.00243-16. Print 2016 May 15.


Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.

Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT.

mBio. 2014 Jun 3;5(3):e01193-14. doi: 10.1128/mBio.01193-14.


Refined NrfA phylogeny improves PCR-based nrfA gene detection.

Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA.

Appl Environ Microbiol. 2014 Apr;80(7):2110-9. doi: 10.1128/AEM.03443-13. Epub 2014 Jan 24.


Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils.

Sanford RA, Wagner DD, Wu Q, Chee-Sanford JC, Thomas SH, Cruz-García C, Rodríguez G, Massol-Deyá A, Krishnani KK, Ritalahti KM, Nissen S, Konstantinidis KT, Löffler FE.

Proc Natl Acad Sci U S A. 2012 Nov 27;109(48):19709-14. doi: 10.1073/pnas.1211238109. Epub 2012 Nov 12.


Molecular ecology of macrolide-lincosamide-streptogramin B methylases in waste lagoons and subsurface waters associated with swine production.

Koike S, Aminov RI, Yannarell AC, Gans HD, Krapac IG, Chee-Sanford JC, Mackie RI.

Microb Ecol. 2010 Apr;59(3):487-98. doi: 10.1007/s00248-009-9610-0. Epub 2009 Nov 19.


Fate and transport of antibiotic residues and antibiotic resistance genes following land application of manure waste.

Chee-Sanford JC, Mackie RI, Koike S, Krapac IG, Lin YF, Yannarell AC, Maxwell S, Aminov RI.

J Environ Qual. 2009 Apr 27;38(3):1086-108. doi: 10.2134/jeq2008.0128. Print 2009 May-Jun. Review.


Monitoring and source tracking of tetracycline resistance genes in lagoons and groundwater adjacent to swine production facilities over a 3-year period.

Koike S, Krapac IG, Oliver HD, Yannarell AC, Chee-Sanford JC, Aminov RI, Mackie RI.

Appl Environ Microbiol. 2007 Aug;73(15):4813-23. Epub 2007 Jun 1.


DNA buoyant density shifts during 15N-DNA stable isotope probing.

Cupples AM, Shaffer EA, Chee-Sanford JC, Sims GK.

Microbiol Res. 2007;162(4):328-34. Epub 2006 Mar 24.


Detection of tetracycline resistance genes by PCR methods.

Aminov RI, Chee-Sanford JC, Garrigues N, Mehboob A, Mackie RI.

Methods Mol Biol. 2004;268:3-13.


Development, validation, and application of PCR primers for detection of tetracycline efflux genes of gram-negative bacteria.

Aminov RI, Chee-Sanford JC, Garrigues N, Teferedegne B, Krapac IJ, White BA, Mackie RI.

Appl Environ Microbiol. 2002 Apr;68(4):1786-93.


Occurrence and diversity of tetracycline resistance genes in lagoons and groundwater underlying two swine production facilities.

Chee-Sanford JC, Aminov RI, Krapac IJ, Garrigues-Jeanjean N, Mackie RI.

Appl Environ Microbiol. 2001 Apr;67(4):1494-502.


Water quality factors affecting bromate reduction in biologically active carbon filters.

Kirisits MJ, Snoeyink VL, Inan H, Chee-Sanford JC, Raskin L, Brown JC.

Water Res. 2001 Mar;35(4):891-900.


Anaerobic naphthalene degradation by microbial pure cultures under nitrate-reducing conditions.

Rockne KJ, Chee-Sanford JC, Sanford RA, Hedlund BP, Staley JT, Strand SE.

Appl Environ Microbiol. 2000 Apr;66(4):1595-601.


Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4.

Chee-Sanford JC, Frost JW, Fries MR, Zhou J, Tiedje JM.

Appl Environ Microbiol. 1996 Mar;62(3):964-73.


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