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Items: 1 to 50 of 59

1.

Humpback whale song occurrence reflects ecosystem variability in feeding and migratory habitat of the northeast Pacific.

Ryan JP, Cline DE, Joseph JE, Margolina T, Santora JA, Kudela RM, Chavez FP, Pennington JT, Wahl C, Michisaki R, Benoit-Bird K, Forney KA, Stimpert AK, DeVogelaere A, Black N, Fischer M.

PLoS One. 2019 Sep 16;14(9):e0222456. doi: 10.1371/journal.pone.0222456. eCollection 2019.

2.

Fluorescence enzymatic assay for bacterial polyphosphate kinase 1 (PPK1) as a platform for screening antivirulence molecules.

Campos F, Álvarez JA, Ortiz-Severín J, Varas MA, Lagos CF, Cabrera R, Álvarez SA, Chávez FP.

Infect Drug Resist. 2019 Jul 22;12:2237-2242. doi: 10.2147/IDR.S181906. eCollection 2019.

3.

Depth distributions of nitrite reductase (nirK) gene variants reveal spatial dynamics of thaumarchaeal ecotype populations in coastal Monterey Bay.

Reji L, Tolar BB, Smith JM, Chavez FP, Francis CA.

Environ Microbiol. 2019 Jul 22. doi: 10.1111/1462-2920.14753. [Epub ahead of print]

PMID:
31330081
4.

Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection.

Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE.

ISME J. 2019 Jul 18. doi: 10.1038/s41396-019-0472-2. [Epub ahead of print]

PMID:
31320727
5.

Impacts of urban carbon dioxide emissions on sea-air flux and ocean acidification in nearshore waters.

Northcott D, Sevadjian J, Sancho-Gallegos DA, Wahl C, Friederich J, Chavez FP.

PLoS One. 2019 Mar 27;14(3):e0214403. doi: 10.1371/journal.pone.0214403. eCollection 2019.

6.

Differential co-occurrence relationships shaping ecotype diversification within Thaumarchaeota populations in the coastal ocean water column.

Reji L, Tolar BB, Smith JM, Chavez FP, Francis CA.

ISME J. 2019 May;13(5):1144-1158. doi: 10.1038/s41396-018-0311-x. Epub 2019 Jan 4.

PMID:
30610232
7.

Use of C. elegans Diapause to Study Transgenerational Responses to Pathogen Infection.

Chávez FP, Calixto A.

Methods Mol Biol. 2019;1918:191-197. doi: 10.1007/978-1-4939-9000-9_16.

PMID:
30580410
8.

Static Immersion and Injection Methods for Live Cell Imaging of Foodborne Pathogen Infections in Zebrafish Larvae.

Varas MA, Ortíz-Severín J, Marcoleta AE, Santiviago CA, Allende ML, Chávez FP.

Methods Mol Biol. 2019;1918:183-190. doi: 10.1007/978-1-4939-9000-9_15.

PMID:
30580409
9.

Inhibiting Pathogen Surface Adherence by Multilayer Polyelectrolyte Films Functionalized with Glucofuranose Derivatives.

Villalobos V, Leiva Á, Ríos HE, Pavez J, Silva CP, Ahmar M, Queneau Y, Blamey JM, Chávez FP, Urzúa MD.

ACS Appl Mater Interfaces. 2018 Aug 22;10(33):28147-28158. doi: 10.1021/acsami.8b03605. Epub 2018 Aug 13.

PMID:
30035536
10.

A Sixteen-year Decline in Dissolved Oxygen in the Central California Current.

Ren AS, Chai F, Xue H, Anderson DM, Chavez FP.

Sci Rep. 2018 May 8;8(1):7290. doi: 10.1038/s41598-018-25341-8.

11.

Evaluating Different Virulence Traits of Klebsiella pneumoniae Using Dictyostelium discoideum and Zebrafish Larvae as Host Models.

Marcoleta AE, Varas MA, Ortiz-Severín J, Vásquez L, Berríos-Pastén C, Sabag AV, Chávez FP, Allende ML, Santiviago CA, Monasterio O, Lagos R.

Front Cell Infect Microbiol. 2018 Feb 9;8:30. doi: 10.3389/fcimb.2018.00030. eCollection 2018.

12.

Inorganic Polyphosphate Is Essential for Salmonella Typhimurium Virulence and Survival in Dictyostelium discoideum.

Varas MA, Riquelme-Barrios S, Valenzuela C, Marcoleta AE, Berríos-Pastén C, Santiviago CA, Chávez FP.

Front Cell Infect Microbiol. 2018 Jan 30;8:8. doi: 10.3389/fcimb.2018.00008. eCollection 2018.

13.

Declining oxygen in the global ocean and coastal waters.

Breitburg D, Levin LA, Oschlies A, Grégoire M, Chavez FP, Conley DJ, Garçon V, Gilbert D, Gutiérrez D, Isensee K, Jacinto GS, Limburg KE, Montes I, Naqvi SWA, Pitcher GC, Rabalais NN, Roman MR, Rose KA, Seibel BA, Telszewski M, Yasuhara M, Zhang J.

Science. 2018 Jan 5;359(6371). pii: eaam7240. doi: 10.1126/science.aam7240. Review.

PMID:
29301986
14.

Transgenerational Diapause as an Avoidance Strategy against Bacterial Pathogens in Caenorhabditis elegans.

Palominos MF, Verdugo L, Gabaldon C, Pollak B, Ortíz-Severín J, Varas MA, Chávez FP, Calixto A.

MBio. 2017 Oct 10;8(5). pii: e01234-17. doi: 10.1128/mBio.01234-17.

15.

In vivo Host-Pathogen Interaction as Revealed by Global Proteomic Profiling of Zebrafish Larvae.

Díaz-Pascual F, Ortíz-Severín J, Varas MA, Allende ML, Chávez FP.

Front Cell Infect Microbiol. 2017 Jul 25;7:334. doi: 10.3389/fcimb.2017.00334. eCollection 2017.

16.

Biomonitoring of marine vertebrates in Monterey Bay using eDNA metabarcoding.

Andruszkiewicz EA, Starks HA, Chavez FP, Sassoubre LM, Block BA, Boehm AB.

PLoS One. 2017 Apr 25;12(4):e0176343. doi: 10.1371/journal.pone.0176343. eCollection 2017.

17.

Salmonella Typhimurium induces cloacitis-like symptomsin zebrafish larvae.

Varas M, Ortíz-Severín J, Marcoleta AE, Díaz-Pascual F, Allende ML, Santiviago CA, Chávez FP.

Microb Pathog. 2017 Jun;107:317-320. doi: 10.1016/j.micpath.2017.04.010. Epub 2017 Apr 8.

PMID:
28400130
18.

Datasets for transcriptomics, q-proteomics and phenotype microarrays of polyphosphate metabolism mutants from Escherichia coli.

Varas M, Valdivieso C, Mauriaca C, Ortíz-Severín J, Paradela A, Poblete-Castro I, Cabrera R, Chávez FP.

Data Brief. 2017 Mar 18;12:13-17. doi: 10.1016/j.dib.2017.03.010. eCollection 2017 Jun.

19.

Live-cell imaging of Salmonella Typhimurium interaction with zebrafish larvae after injection and immersion delivery methods.

Varas M, Fariña A, Díaz-Pascual F, Ortíz-Severín J, Marcoleta AE, Allende ML, Santiviago CA, Chávez FP.

J Microbiol Methods. 2017 Apr;135:20-25. doi: 10.1016/j.mimet.2017.01.020. Epub 2017 Feb 1.

PMID:
28161588
20.

Multi-level evaluation of Escherichia coli polyphosphate related mutants using global transcriptomic, proteomic and phenomic analyses.

Varas M, Valdivieso C, Mauriaca C, Ortíz-Severín J, Paradela A, Poblete-Castro I, Cabrera R, Chávez FP.

Biochim Biophys Acta Gen Subj. 2017 Apr;1861(4):871-883. doi: 10.1016/j.bbagen.2017.01.007. Epub 2017 Jan 7.

PMID:
28069396
21.

Relevant Genes Linked to Virulence Are Required for Salmonella Typhimurium to Survive Intracellularly in the Social Amoeba Dictyostelium discoideum.

Riquelme S, Varas M, Valenzuela C, Velozo P, Chahin N, Aguilera P, Sabag A, Labra B, Álvarez SA, Chávez FP, Santiviago CA.

Front Microbiol. 2016 Aug 23;7:1305. doi: 10.3389/fmicb.2016.01305. eCollection 2016.

22.

Interacting environmental mosaics drive geographic variation in mussel performance and predation vulnerability.

Kroeker KJ, Sanford E, Rose JM, Blanchette CA, Chan F, Chavez FP, Gaylord B, Helmuth B, Hill TM, Hofmann GE, McManus MA, Menge BA, Nielsen KJ, Raimondi PT, Russell AD, Washburn L.

Ecol Lett. 2016 Jul;19(7):771-9. doi: 10.1111/ele.12613. Epub 2016 May 6.

PMID:
27151381
23.

Dictyostelium discoideum as a surrogate host-microbe model for antivirulence screening in Pseudomonas aeruginosa PAO1.

Bravo-Toncio C, Álvarez JA, Campos F, Ortíz-Severín J, Varas M, Cabrera R, Lagos CF, Chávez FP.

Int J Antimicrob Agents. 2016 May;47(5):403-9. doi: 10.1016/j.ijantimicag.2016.02.005. Epub 2016 Mar 18.

PMID:
27066943
24.

Climate mediates hypoxic stress on fish diversity and nursery function at the land-sea interface.

Hughes BB, Levey MD, Fountain MC, Carlisle AB, Chavez FP, Gleason MG.

Proc Natl Acad Sci U S A. 2015 Jun 30;112(26):8025-30. doi: 10.1073/pnas.1505815112. Epub 2015 Jun 8.

25.

Multiple antibiotic susceptibility of polyphosphate kinase mutants (ppk1 and ppk2) from Pseudomonas aeruginosa PAO1 as revealed by global phenotypic analysis.

Ortiz-Severín J, Varas M, Bravo-Toncio C, Guiliani N, Chávez FP.

Biol Res. 2015 Apr 25;48:22. doi: 10.1186/s40659-015-0012-0.

26.

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

Aylward FO, Eppley JM, Smith JM, Chavez FP, Scholin CA, DeLong EF.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5443-8. doi: 10.1073/pnas.1502883112. Epub 2015 Mar 9.

27.

Cyanobacterial distributions along a physico-chemical gradient in the Northeastern Pacific Ocean.

Sudek S, Everroad RC, Gehman AL, Smith JM, Poirier CL, Chavez FP, Worden AZ.

Environ Microbiol. 2015 Oct;17(10):3692-707. doi: 10.1111/1462-2920.12742. Epub 2015 Mar 6.

PMID:
25522910
28.

Ammonium uptake by phytoplankton regulates nitrification in the sunlit ocean.

Smith JM, Chavez FP, Francis CA.

PLoS One. 2014 Sep 24;9(9):e108173. doi: 10.1371/journal.pone.0108173. eCollection 2014.

29.

Differential contributions of archaeal ammonia oxidizer ecotypes to nitrification in coastal surface waters.

Smith JM, Casciotti KL, Chavez FP, Francis CA.

ISME J. 2014 Aug;8(8):1704-14. doi: 10.1038/ismej.2014.11. Epub 2014 Feb 20.

30.

Pattern and synchrony of gene expression among sympatric marine microbial populations.

Ottesen EA, Young CR, Eppley JM, Ryan JP, Chavez FP, Scholin CA, DeLong EF.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E488-97. doi: 10.1073/pnas.1222099110. Epub 2013 Jan 23.

31.

Climate change and marine ecosystems.

Chavez FP.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):19045-6. doi: 10.1073/pnas.1217112109. Epub 2012 Nov 6. No abstract available.

32.

Oxygen: a fundamental property regulating pelagic ecosystem structure in the coastal southeastern tropical Pacific.

Bertrand A, Chaigneau A, Peraltilla S, Ledesma J, Graco M, Monetti F, Chavez FP.

PLoS One. 2011;6(12):e29558. doi: 10.1371/journal.pone.0029558. Epub 2011 Dec 28. Erratum in: PLoS One. 2012;7(2). doi: 10.1371/annotation/891b6bd0-185f-4f5f-9f0c-d2408a31f7f4.

33.

Seasonal change in the abundance of Synechococcus and multiple distinct phylotypes in Monterey Bay determined by rbcL and narB quantitative PCR.

Paerl RW, Turk KA, Beinart RA, Chavez FP, Zehr JP.

Environ Microbiol. 2012 Mar;14(3):580-93. doi: 10.1111/j.1462-2920.2011.02594.x. Epub 2011 Sep 29.

PMID:
21955724
34.

Differential distributions of synechococcus subgroups across the california current system.

Paerl RW, Johnson KS, Welsh RM, Worden AZ, Chavez FP, Zehr JP.

Front Microbiol. 2011 Apr 4;2:59. doi: 10.3389/fmicb.2011.00059. eCollection 2011.

35.

Marine primary production in relation to climate variability and change.

Chavez FP, Messié M, Pennington JT.

Ann Rev Mar Sci. 2011;3:227-60. Review.

PMID:
21329205
36.

Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton.

Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, Hilton J, Thiagarajan M, Caler E, Read B, Lasken RS, Chavez FP, Worden AZ.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14679-84. doi: 10.1073/pnas.1001665107. Epub 2010 Jul 28.

37.

New structural and functional defects in polyphosphate deficient bacteria: a cellular and proteomic study.

Varela C, Mauriaca C, Paradela A, Albar JP, Jerez CA, Chávez FP.

BMC Microbiol. 2010 Jan 12;10:7. doi: 10.1186/1471-2180-10-7.

38.

Dimethylmercury in coastal upwelling waters, Monterey Bay, California.

Conaway CH, Black FJ, Gault-Ringold M, Pennington JT, Chavez FP, Flegal AR.

Environ Sci Technol. 2009 Mar 1;43(5):1305-9.

PMID:
19350895
39.

Constitutive and regulated expression vectors to construct polyphosphate deficient bacteria.

Chávez FP, Mauriaca C, Jerez CA.

BMC Res Notes. 2009 Mar 26;2:50. doi: 10.1186/1756-0500-2-50.

40.

Bottom-up and climatic forcing on the worldwide population of leatherback turtles.

Saba VS, Spotila JR, Chavez FP, Musick JA.

Ecology. 2008 May;89(5):1414-27. Erratum in: Ecology. 2008 Oct;89(10):2971.

PMID:
18543633
41.

Motility and chemotaxis of Pseudomonas sp. B4 towards polychlorobiphenyls and chlorobenzoates.

Gordillo F, Chávez FP, Jerez CA.

FEMS Microbiol Ecol. 2007 May;60(2):322-8. Epub 2007 Mar 20.

42.

Controls on tropical Pacific Ocean productivity revealed through nutrient stress diagnostics.

Behrenfeld MJ, Worthington K, Sherrell RM, Chavez FP, Strutton P, McPhaden M, Shea DM.

Nature. 2006 Aug 31;442(7106):1025-8.

PMID:
16943835
43.

Adaptive responses and cellular behaviour of biphenyl-degrading bacteria toward polychlorinated biphenyls.

Chávez FP, Gordillo F, Jerez CA.

Biotechnol Adv. 2006 May-Jun;24(3):309-20. Epub 2006 Jan 18. Review.

PMID:
16413162
45.

Southern Ocean iron enrichment experiment: carbon cycling in high- and low-Si waters.

Coale KH, Johnson KS, Chavez FP, Buesseler KO, Barber RT, Brzezinski MA, Cochlan WP, Millero FJ, Falkowski PG, Bauer JE, Wanninkhof RH, Kudela RM, Altabet MA, Hales BE, Takahashi T, Landry MR, Bidigare RR, Wang X, Chase Z, Strutton PG, Friederich GE, Gorbunov MY, Lance VP, Hilting AK, Hiscock MR, Demarest M, Hiscock WT, Sullivan KF, Tanner SJ, Gordon RM, Hunter CN, Elrod VA, Fitzwater SE, Jones JL, Tozzi S, Koblizek M, Roberts AE, Herndon J, Brewster J, Ladizinsky N, Smith G, Cooper D, Timothy D, Brown SL, Selph KE, Sheridan CC, Twining BS, Johnson ZI.

Science. 2004 Apr 16;304(5669):408-14.

46.

Cloning and sequence analysis of the Candida utilis HIS3 gene.

Basabe L, Domínguez I, Chávez FP.

Biomol Eng. 2004 Jan;21(1):15-20.

PMID:
14715315
47.

From anchovies to sardines and back: multidecadal change in the Pacific Ocean.

Chavez FP, Ryan J, Lluch-Cota SE, Niquen C M.

Science. 2003 Jan 10;299(5604):217-21. Review.

PMID:
12522241
49.

Mortality of sea lions along the central California coast linked to a toxic diatom bloom.

Scholin CA, Gulland F, Doucette GJ, Benson S, Busman M, Chavez FP, Cordaro J, DeLong R, De Vogelaere A, Harvey J, Haulena M, Lefebvre K, Lipscomb T, Loscutoff S, Lowenstine LJ, Marin R 3rd, Miller PE, McLellan WA, Moeller PD, Powell CL, Rowles T, Silvagni P, Silver M, Spraker T, Trainer V, Van Dolah FM.

Nature. 2000 Jan 6;403(6765):80-4.

PMID:
10638756
50.

Biological and chemical response of the equatorial pacific ocean to the 1997-98 El Nino

Chavez FP, Strutton PG, Friederich GE, Feely RA, Feldman GC, Foley DG, McPhaden MJ.

Science. 1999 Dec 10;286(5447):2126-31.

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