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Items: 19

1.

Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales.

Low SJ, Džunková M, Chaumeil PA, Parks DH, Hugenholtz P.

Nat Microbiol. 2019 Aug;4(8):1306-1315. doi: 10.1038/s41564-019-0448-z. Epub 2019 May 20.

PMID:
31110365
2.

Chloroplast DNA variation in a hyperdiverse tropical tree community.

Caron H, Molino JF, Sabatier D, Léger P, Chaumeil P, Scotti-Saintagne C, Frigério JM, Scotti I, Franc A, Petit RJ.

Ecol Evol. 2019 Mar 26;9(8):4897-4905. doi: 10.1002/ece3.5096. eCollection 2019 Apr.

3.

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.

Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil PA, Hugenholtz P.

Nat Biotechnol. 2018 Nov;36(10):996-1004. doi: 10.1038/nbt.4229. Epub 2018 Aug 27.

PMID:
30148503
4.

Author Correction: Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW.

Nat Microbiol. 2018 Feb;3(2):253. doi: 10.1038/s41564-017-0083-5.

PMID:
29234139
5.

ArachnoServer 3.0: an online resource for automated discovery, analysis and annotation of spider toxins.

Pineda SS, Chaumeil PA, Kunert A, Kaas Q, Thang MWC, Le L, Nuhn M, Herzig V, Saez NJ, Cristofori-Armstrong B, Anangi R, Senff S, Gorse D, King GF.

Bioinformatics. 2018 Mar 15;34(6):1074-1076. doi: 10.1093/bioinformatics/btx661.

PMID:
29069336
6.

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life.

Parks DH, Rinke C, Chuvochina M, Chaumeil PA, Woodcroft BJ, Evans PN, Hugenholtz P, Tyson GW.

Nat Microbiol. 2017 Nov;2(11):1533-1542. doi: 10.1038/s41564-017-0012-7. Epub 2017 Sep 11. Erratum in: Nat Microbiol. 2017 Dec 12;:.

PMID:
28894102
7.

R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring.

Rimet F, Chaumeil P, Keck F, Kermarrec L, Vasselon V, Kahlert M, Franc A, Bouchez A.

Database (Oxford). 2016 Mar 17;2016. pii: baw016. doi: 10.1093/database/baw016. Print 2016.

8.

Differential accumulation of soluble proteins in roots of metallicolous and nonmetallicolous populations of Agrostis capillaris L. exposed to Cu.

Hego E, Bes CM, Bedon F, Palagi PM, Chaumeil P, Barré A, Claverol S, Dupuy JW, Bonneu M, Lalanne C, Plomion C, Mench M.

Proteomics. 2014 Aug;14(15):1746-58. doi: 10.1002/pmic.201300168. Epub 2014 Jun 16.

PMID:
24842164
9.

Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.

Kermarrec L, Franc A, Rimet F, Chaumeil P, Humbert JF, Bouchez A.

Mol Ecol Resour. 2013 Jul;13(4):607-19. doi: 10.1111/1755-0998.12105. Epub 2013 Apr 17.

PMID:
23590277
10.

Proteomic plasticity of two Eucalyptus genotypes under contrasted water regimes in the field.

Bedon F, Villar E, Vincent D, Dupuy JW, Lomenech AM, Mabialangoma A, Chaumeil P, Barré A, Plomion C, Gion JM.

Plant Cell Environ. 2012 Apr;35(4):790-805. doi: 10.1111/j.1365-3040.2011.02452.x. Epub 2011 Nov 17.

11.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.

12.

Current trends in microsatellite genotyping.

Guichoux E, Lagache L, Wagner S, Chaumeil P, Léger P, Lepais O, Lepoittevin C, Malausa T, Revardel E, Salin F, Petit RJ.

Mol Ecol Resour. 2011 Jul;11(4):591-611. doi: 10.1111/j.1755-0998.2011.03014.x. Epub 2011 May 12. Review.

PMID:
21565126
13.

ArachnoServer 2.0, an updated online resource for spider toxin sequences and structures.

Herzig V, Wood DL, Newell F, Chaumeil PA, Kaas Q, Binford GJ, Nicholson GM, Gorse D, King GF.

Nucleic Acids Res. 2011 Jan;39(Database issue):D653-7. doi: 10.1093/nar/gkq1058. Epub 2010 Oct 29.

14.

Interaction between environmental factors affects the accumulation of root proteins in hydroponically grown Eucalyptus globulus (Labill.).

Bedon F, Majada J, Feito I, Chaumeil P, Dupuy JW, Lomenech AM, Barre A, Gion JM, Plomion C.

Plant Physiol Biochem. 2011 Jan;49(1):69-76. doi: 10.1016/j.plaphy.2010.09.020. Epub 2010 Oct 12.

PMID:
20974537
15.

A micromethod for high throughput RNA extraction in forest trees.

le Provost G, Herrera R, Paiva JA, Chaumeil P, Salin F, Plomion C.

Biol Res. 2007;40(3):291-7. doi: /S0716-97602007000400003. Epub 2008 Apr 17.

16.

The proteome of maritime pine wood forming tissue.

Gion JM, Lalanne C, Le Provost G, Ferry-Dumazet H, Paiva J, Chaumeil P, Frigerio JM, Brach J, Barré A, de Daruvar A, Claverol S, Bonneu M, Sommerer N, Negroni L, Plomion C.

Proteomics. 2005 Sep;5(14):3731-51.

PMID:
16127725
17.

Cross-species transferability and mapping of genomic and cDNA SSRs in pines.

Chagné D, Chaumeil P, Ramboer A, Collada C, Guevara A, Cervera MT, Vendramin GG, Garcia V, Frigerio JM, Echt C, Richardson T, Plomion C.

Theor Appl Genet. 2004 Oct;109(6):1204-14. Epub 2004 Sep 22.

PMID:
15448894
18.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
19.

Correction of selenium deficiency in hemodialyzed patients.

Saint-Georges MD, Bonnefont DJ, Bourely BA, Jaudon MC, Cereze P, Chaumeil P, Gard C, D'Auzac CL.

Kidney Int Suppl. 1989 Nov;27:S274-7.

PMID:
2636670

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