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Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TTB, Van Vinh Chau N, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MTG, Tucker AW, Maskell DJ; BRaDP1T Consortium.

Nat Commun. 2019 Nov 22;10(1):5326. doi: 10.1038/s41467-019-13138-w.


A polarization-induced 2D hole gas in undoped gallium nitride quantum wells.

Chaudhuri R, Bader SJ, Chen Z, Muller DA, Xing HG, Jena D.

Science. 2019 Sep 27;365(6460):1454-1457. doi: 10.1126/science.aau8623.


The fitness landscape of the African Salmonella Typhimurium ST313 strain D23580 reveals unique properties of the pBT1 plasmid.

Canals R, Chaudhuri RR, Steiner RE, Owen SV, Quinones-Olvera N, Gordon MA, Baym M, Ibba M, Hinton JCD.

PLoS Pathog. 2019 Sep 27;15(9):e1007948. doi: 10.1371/journal.ppat.1007948. eCollection 2019 Sep.


Acetyl Zingerone: An efficacious multifunctional ingredient for continued protection against on-going DNA damage in melanocytes after sun exposure ends.

Chaudhuri RK, Meyer T, Premi S, Brash D.

Int J Cosmet Sci. 2019 Sep 20. doi: 10.1111/ics.12582. [Epub ahead of print]


A Zingerone Analog, Acetyl Zingerone, Bolsters Matrisome Synthesis, Inhibits Matrix Metallopeptidases, and Represses IL-17A Target Gene Expression.

Swindell WR, Bojanowski K, Chaudhuri RK.

J Invest Dermatol. 2019 Aug 27. pii: S0022-202X(19)33150-1. doi: 10.1016/j.jid.2019.07.715. [Epub ahead of print]


Fock-space multireference coupled cluster calculations of Auger energies of noble gas elements using relativistic spinors.

Chaudhuri RK, Chattopadhyay S.

J Chem Phys. 2019 Aug 21;151(7):074114. doi: 10.1063/1.5094829.


The intrinsic attractor manifold and population dynamics of a canonical cognitive circuit across waking and sleep.

Chaudhuri R, Gerçek B, Pandey B, Peyrache A, Fiete I.

Nat Neurosci. 2019 Sep;22(9):1512-1520. doi: 10.1038/s41593-019-0460-x. Epub 2019 Aug 12.


Phosphoproteomics reveals conserved exercise-stimulated signaling and AMPK regulation of store-operated calcium entry.

Nelson ME, Parker BL, Burchfield JG, Hoffman NJ, Needham EJ, Cooke KC, Naim T, Sylow L, Ling NX, Francis D, Norris DM, Chaudhuri R, Oakhill JS, Richter EA, Lynch GS, Stöckli J, James DE.

EMBO J. 2019 Aug 5:e102578. doi: 10.15252/embj.2019102578. [Epub ahead of print]


Correction to: Human tissue-specific MSCs demonstrate differential mitochondria transfer abilities that may determine their regenerative abilities.

Paliwal S, Chaudhuri R, Agrawal A, Mohanty S.

Stem Cell Res Ther. 2019 Jul 26;10(1):215. doi: 10.1186/s13287-019-1343-5.


Draft Whole-Genome Sequences of 10 Aeromonas Strains from Clinical and Environmental Sources.

Gray K, Green LR, Chaudhuri RR, Shaw JG.

Microbiol Resour Announc. 2019 Jul 25;8(30). pii: e00170-19. doi: 10.1128/MRA.00170-19.


Low-dose oral theophylline combined with inhaled corticosteroids for people with chronic obstructive pulmonary disease and high risk of exacerbations: a RCT.

Devereux G, Cotton S, Fielding S, McMeekin N, Barnes PJ, Briggs A, Burns G, Chaudhuri R, Chrystyn H, Davies L, Soyza A, Gompertz S, Haughney J, Innes K, Kaniewska J, Lee A, Morice A, Norrie J, Sullivan A, Wilson A, Price D.

Health Technol Assess. 2019 Jul;23(37):1-146. doi: 10.3310/hta23370.


Cardiomyocyte targeted overexpression of IGF1 during detraining restores compromised cardiac condition via mTORC2 mediated switching of PKCδ to PKCα.

Chatterjee E, Chaudhuri RD, Sarkar S.

Biochim Biophys Acta Mol Basis Dis. 2019 Oct 1;1865(10):2736-2752. doi: 10.1016/j.bbadis.2019.07.003. Epub 2019 Jul 9.


Proteomic Profiling, Transcription Factor Modeling, and Genomics of Evolved Tolerant Strains Elucidate Mechanisms of Vanillin Toxicity in Escherichia coli.

Pattrick CA, Webb JP, Green J, Chaudhuri RR, Collins MO, Kelly DJ.

mSystems. 2019 Jun 11;4(4). pii: e00163-19. doi: 10.1128/mSystems.00163-19.


A Competitive Pull-Down Assay Using G-quadruplex DNA Linked Magnetic Nanoparticles To Determine Specificity of G-quadruplex Ligands.

Panda D, Saha P, Chaudhuri R, Prasanth T, Ravichandiran V, Dash J.

Anal Chem. 2019 Jun 18;91(12):7705-7711. doi: 10.1021/acs.analchem.9b00889. Epub 2019 May 29.


System design of a single-shot reconfigurable null test using a spatial light modulator for freeform metrology.

Chaudhuri R, Papa J, Rolland JP.

Opt Lett. 2019 Apr 15;44(8):2000-2003. doi: 10.1364/OL.44.002000.


Change in type-2 biomarkers and related cytokines with prednisolone in uncontrolled severe oral corticosteroid dependent asthmatics: an interventional open-label study.

Busby J, Holweg CTJ, Chai A, Bradding P, Cai F, Chaudhuri R, Mansur AH, Lordan JL, Matthews JG, Menzies-Gow A, Niven R, Staton T, Heaney LG.

Thorax. 2019 Aug;74(8):806-809. doi: 10.1136/thoraxjnl-2018-212709. Epub 2019 Apr 2.


Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.

Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD.

PLoS Biol. 2019 Jan 15;17(1):e3000059. doi: 10.1371/journal.pbio.3000059. eCollection 2019 Jan.


Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle.

Vohra P, Chaudhuri RR, Mayho M, Vrettou C, Chintoan-Uta C, Thomson NR, Hope JC, Hopkins J, Stevens MP.

BMC Genomics. 2019 Jan 8;20(1):20. doi: 10.1186/s12864-018-5319-0.


Analysis of over 2 decades of colon injuries identifies optimal method of diversion: Does an end justify the means?

Manley NR, Sharpe JP, Lewis RH, Iltis MS, Chaudhuri R, Fabian TC, Croce MA, Magnotti LJ.

J Trauma Acute Care Surg. 2019 Feb;86(2):214-219. doi: 10.1097/TA.0000000000002135.


Moderate-to-severe asthma in individuals of European ancestry: a genome-wide association study.

Shrine N, Portelli MA, John C, Soler Artigas M, Bennett N, Hall R, Lewis J, Henry AP, Billington CK, Ahmad A, Packer RJ, Shaw D, Pogson ZEK, Fogarty A, McKeever TM, Singapuri A, Heaney LG, Mansur AH, Chaudhuri R, Thomson NC, Holloway JW, Lockett GA, Howarth PH, Djukanovic R, Hankinson J, Niven R, Simpson A, Chung KF, Sterk PJ, Blakey JD, Adcock IM, Hu S, Guo Y, Obeidat M, Sin DD, van den Berge M, Nickle DC, Bossé Y, Tobin MD, Hall IP, Brightling CE, Wain LV, Sayers I.

Lancet Respir Med. 2019 Jan;7(1):20-34. doi: 10.1016/S2213-2600(18)30389-8. Epub 2018 Dec 11.


Generation of an optical frequency comb based on two cascaded dual-parallel polarization modulators.

Chaudhuri RB, Barman AD.

Appl Opt. 2018 Oct 20;57(30):9164-9171. doi: 10.1364/AO.57.009164.


Human tissue-specific MSCs demonstrate differential mitochondria transfer abilities that may determine their regenerative abilities.

Paliwal S, Chaudhuri R, Agrawal A, Mohanty S.

Stem Cell Res Ther. 2018 Nov 8;9(1):298. doi: 10.1186/s13287-018-1012-0. Erratum in: Stem Cell Res Ther. 2019 Jul 26;10(1):215.


Remotely Monitored Therapy and Nitric Oxide Suppression Identifies Nonadherence in Severe Asthma.

Heaney LG, Busby J, Bradding P, Chaudhuri R, Mansur AH, Niven R, Pavord ID, Lindsay JT, Costello RW; Medical Research Council UK Refractory Asthma Stratification Programme (RASP-UK).

Am J Respir Crit Care Med. 2019 Feb 15;199(4):454-464. doi: 10.1164/rccm.201806-1182OC.


Secretory Inositol Polyphosphate 4-Phosphatase Protects against Airway Inflammation and Remodeling.

Khanna K, Chaudhuri R, Aich J, Pattnaik B, Panda L, Prakash YS, Mabalirajan U, Ghosh B, Agrawal A.

Am J Respir Cell Mol Biol. 2019 Apr;60(4):399-412. doi: 10.1165/rcmb.2017-0353OC.


Effect of Theophylline as Adjunct to Inhaled Corticosteroids on Exacerbations in Patients With COPD: A Randomized Clinical Trial.

Devereux G, Cotton S, Fielding S, McMeekin N, Barnes PJ, Briggs A, Burns G, Chaudhuri R, Chrystyn H, Davies L, De Soyza A, Gompertz S, Haughney J, Innes K, Kaniewska J, Lee A, Morice A, Norrie J, Sullivan A, Wilson A, Price D.

JAMA. 2018 Oct 16;320(15):1548-1559. doi: 10.1001/jama.2018.14432.


Insights into frequent asthma exacerbations from a primary care perspective and the implications of UK National Review of Asthma Deaths recommendations.

Yang JF, Chaudhuri R, Thomson NC, Ramparsad N, O'Pray H, Barclay S, MacBride-Stewart S, McCallum C, Sharma V, McSharry C, Murray D, Shepherd M, Lee WN.

NPJ Prim Care Respir Med. 2018 Sep 19;28(1):35. doi: 10.1038/s41533-018-0103-9.


Posterior Thoracic Stab Wounds: Evaluating the Value of Commonly Used Radiologic Modalities.

Brigode WM, Masteller M, Chaudhuri R, Sullivan R, Vafa A.

Am Surg. 2018 Aug 1;84(8):1363-1367.


Novel nuclear translocation of inositol polyphosphate 4-phosphatase is associated with cell cycle, proliferation and survival.

Chaudhuri R, Khanna K, Koundinya D, Pattnaik B, Vatsa D, Agrawal A, Ghosh B.

Biochim Biophys Acta Mol Cell Res. 2018 Jul 30. pii: S0167-4889(18)30188-5. doi: 10.1016/j.bbamcr.2018.07.013. [Epub ahead of print]


Effect of tralokinumab, an interleukin-13 neutralising monoclonal antibody, on eosinophilic airway inflammation in uncontrolled moderate-to-severe asthma (MESOS): a multicentre, double-blind, randomised, placebo-controlled phase 2 trial.

Russell RJ, Chachi L, FitzGerald JM, Backer V, Olivenstein R, Titlestad IL, Ulrik CS, Harrison T, Singh D, Chaudhuri R, Leaker B, McGarvey L, Siddiqui S, Wang M, Braddock M, Nordenmark LH, Cohen D, Parikh H, Colice G, Brightling CE; MESOS study investigators.

Lancet Respir Med. 2018 Jul;6(7):499-510. doi: 10.1016/S2213-2600(18)30201-7. Epub 2018 May 21.


Long term stability of a HIV-1 neutralizing monoclonal antibody using isothermal calorimetry.

Clarkson BR, Chaudhuri R, Schön A, Cooper JW, Kueltzo L, Freire E.

Anal Biochem. 2018 Aug 1;554:61-69. doi: 10.1016/j.ab.2018.05.008. Epub 2018 May 8.


In vitro, in silico and in vivo study challenges the impact of bronchial thermoplasty on acute airway smooth muscle mass loss.

Chernyavsky IL, Russell RJ, Saunders RM, Morris GE, Berair R, Singapuri A, Chachi L, Mansur AH, Howarth PH, Dennison P, Chaudhuri R, Bicknell S, Rose FRAJ, Siddiqui S, Brook BS, Brightling CE.

Eur Respir J. 2018 May 24;51(5). pii: 1701680. doi: 10.1183/13993003.01680-2017. Print 2018 May.


Nanotized PPARα Overexpression Targeted to Hypertrophied Myocardium Improves Cardiac Function by Attenuating the p53-GSK3β-Mediated Mitochondrial Death Pathway.

Rana S, Datta R, Chaudhuri RD, Chatterjee E, Chawla-Sarkar M, Sarkar S.

Antioxid Redox Signal. 2019 Feb 10;30(5):713-732. doi: 10.1089/ars.2017.7371. Epub 2018 May 9.


Regenerative abilities of mesenchymal stem cells through mitochondrial transfer.

Paliwal S, Chaudhuri R, Agrawal A, Mohanty S.

J Biomed Sci. 2018 Mar 30;25(1):31. doi: 10.1186/s12929-018-0429-1. Review.


Capacity Assessment of District Health System in India on Services for Prevention and Management of Infertility.

Chauhan S, Unisa S, Joshi B, Kulkarni R, Singh A, Subramanian T, Chaudhuri RN, Baishya AC, Bharat S, Patil A, Pasi A, Agarwal D.

Indian J Community Med. 2018 Jan-Mar;43(1):19-23. doi: 10.4103/ijcm.IJCM_306_16.


Surface-Matrix Screening Identifies Semi-specific Interactions that Improve Potency of a Near Pan-reactive HIV-1-Neutralizing Antibody.

Kwon YD, Chuang GY, Zhang B, Bailer RT, Doria-Rose NA, Gindin TS, Lin B, Louder MK, McKee K, O'Dell S, Pegu A, Schmidt SD, Asokan M, Chen X, Choe M, Georgiev IS, Jin V, Pancera M, Rawi R, Wang K, Chaudhuri R, Kueltzo LA, Manceva SD, Todd JP, Scorpio DG, Kim M, Reinherz EL, Wagh K, Korber BM, Connors M, Shapiro L, Mascola JR, Kwong PD.

Cell Rep. 2018 Feb 13;22(7):1798-1809. doi: 10.1016/j.celrep.2018.01.023.


Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance.

Fazakerley DJ, Chaudhuri R, Yang P, Maghzal GJ, Thomas KC, Krycer JR, Humphrey SJ, Parker BL, Fisher-Wellman KH, Meoli CC, Hoffman NJ, Diskin C, Burchfield JG, Cowley MJ, Kaplan W, Modrusan Z, Kolumam G, Yang JY, Chen DL, Samocha-Bonet D, Greenfield JR, Hoehn KL, Stocker R, James DE.

Elife. 2018 Feb 6;7. pii: e32111. doi: 10.7554/eLife.32111.


The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes.

Chaudhuri R, Krycer JR, Fazakerley DJ, Fisher-Wellman KH, Su Z, Hoehn KL, Yang JYH, Kuncic Z, Vafaee F, James DE.

Sci Rep. 2018 Jan 29;8(1):1774. doi: 10.1038/s41598-018-20104-x.


A randomised pragmatic trial of corticosteroid optimization in severe asthma using a composite biomarker algorithm to adjust corticosteroid dose versus standard care: study protocol for a randomised trial.

Hanratty CE, Matthews JG, Arron JR, Choy DF, Pavord ID, Bradding P, Brightling CE, Chaudhuri R, Cowan DC, Djukanovic R, Gallagher N, Fowler SJ, Hardman TC, Harrison T, Holweg CT, Howarth PH, Lordan J, Mansur AH, Menzies-Gow A, Mosesova S, Niven RM, Robinson DS, Shaw DE, Walker S, Woodcock A, Heaney LG; RASP-UK (Refractory Asthma Stratification Programme) Consortium.

Trials. 2018 Jan 4;19(1):5. doi: 10.1186/s13063-017-2384-7.


Use of Proteins Identified through a Functional Genomic Screen To Develop a Protein Subunit Vaccine That Provides Significant Protection against Virulent Streptococcus suis in Pigs.

Brockmeier SL, Loving CL, Nicholson TL, Wang J, Peters SE, Weinert L, Chaudhuri R, Seilly DJ, Langford PR, Rycroft A, Wren BW, Maskell DJ, Tucker AW.

Infect Immun. 2018 Feb 20;86(3). pii: e00559-17. doi: 10.1128/IAI.00559-17. Print 2018 Mar.


Generalized Itching and Lower-Extremity Spasticity in a Patient with Intrathecal Baclofen Pump.

Mobolaji-Lawal M, Chaudhuri R, Marsh RH, Miller ES, Bhatia K.

J Emerg Med. 2018 Jan;54(1):116-120. doi: 10.1016/j.jemermed.2017.08.090. Epub 2017 Oct 25. No abstract available.


Random Recurrent Networks Near Criticality Capture the Broadband Power Distribution of Human ECoG Dynamics.

Chaudhuri R, He BJ, Wang XJ.

Cereb Cortex. 2018 Oct 1;28(10):3610-3622. doi: 10.1093/cercor/bhx233.


Metabolomic analysis of insulin resistance across different mouse strains and diets.

Stöckli J, Fisher-Wellman KH, Chaudhuri R, Zeng XY, Fazakerley DJ, Meoli CC, Thomas KC, Hoffman NJ, Mangiafico SP, Xirouchaki CE, Yang CH, Ilkayeva O, Wong K, Cooney GJ, Andrikopoulos S, Muoio DM, James DE.

J Biol Chem. 2017 Nov 24;292(47):19135-19145. doi: 10.1074/jbc.M117.818351. Epub 2017 Oct 5.


Correction: Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies.

Domanova W, Krycer JR, Chaudhuri R, Yang P, Vafaee F, Fazakerley DJ, Humphrey SJ, James DE, Kuncic Z.

PLoS One. 2017 Sep 28;12(9):e0185871. doi: 10.1371/journal.pone.0185871. eCollection 2017.


A simplified ab initio treatment of diradicaloid structures produced from stretching and breaking chemical bonds.

Sinha Ray S, Ghosh A, Shit A, Chaudhuri RK, Chattopadhyay S.

Phys Chem Chem Phys. 2017 Aug 23;19(33):22282-22301. doi: 10.1039/c7cp03564k.


Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice.

Oshota O, Conway M, Fookes M, Schreiber F, Chaudhuri RR, Yu L, Morgan FJE, Clare S, Choudhary J, Thomson NR, Lio P, Maskell DJ, Mastroeni P, Grant AJ.

PLoS One. 2017 Aug 10;12(8):e0181365. doi: 10.1371/journal.pone.0181365. eCollection 2017.


Hollow Palladium Nanoparticles Facilitated Biodegradation of an Azo Dye by Electrically Active Biofilms.

Kalathil S, Chaudhuri RG.

Materials (Basel). 2016 Aug 4;9(8). pii: E653. doi: 10.3390/ma9080653.


A confinement induced spectroscopic study of noble gas atoms using equation of motion architecture: Encapsulation within fullerene's voids.

Chaudhuri SK, Chaudhuri RK, Mukherjee PK, Chattopadhyay S.

J Chem Phys. 2017 Jul 21;147(3):034111. doi: 10.1063/1.4994569.


Sequencing a piece of history: complete genome sequence of the original Escherichia coli strain.

Dunne KA, Chaudhuri RR, Rossiter AE, Beriotto I, Browning DF, Squire D, Cunningham AF, Cole JA, Loman N, Henderson IR.

Microb Genom. 2017 Mar 23;3(3):mgen000106. doi: 10.1099/mgen.0.000106. eCollection 2017 Mar.


Biomaterials and cells for cardiac tissue engineering: Current choices.

Chaudhuri R, Ramachandran M, Moharil P, Harumalani M, Jaiswal AK.

Mater Sci Eng C Mater Biol Appl. 2017 Oct 1;79:950-957. doi: 10.1016/j.msec.2017.05.121. Epub 2017 May 17. Review.


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