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Items: 28

1.

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.

Rudman SM, Greenblum S, Hughes RC, Rajpurohit S, Kiratli O, Lowder DB, Lemmon SG, Petrov DA, Chaston JM, Schmidt P.

Proc Natl Acad Sci U S A. 2019 Oct 1;116(40):20025-20032. doi: 10.1073/pnas.1907787116. Epub 2019 Sep 16.

PMID:
31527278
2.

Bacterial Communities in the Alpaca Gastrointestinal Tract Vary With Diet and Body Site.

Carroll C, Olsen KD, Ricks NJ, Dill-McFarland KA, Suen G, Robinson TF, Chaston JM.

Front Microbiol. 2019 Jan 18;9:3334. doi: 10.3389/fmicb.2018.03334. eCollection 2018.

3.

Bacterial Methionine Metabolism Genes Influence Drosophila melanogaster Starvation Resistance.

Judd AM, Matthews MK, Hughes R, Veloz M, Sexton CE, Chaston JM.

Appl Environ Microbiol. 2018 Aug 17;84(17). pii: e00662-18. doi: 10.1128/AEM.00662-18. Print 2018 Sep 1.

4.

A Metagenome-Wide Association Study and Arrayed Mutant Library Confirm Acetobacter Lipopolysaccharide Genes Are Necessary for Association with Drosophila melanogaster.

White KM, Matthews MK, Hughes RC, Sommer AJ, Griffitts JS, Newell PD, Chaston JM.

G3 (Bethesda). 2018 Mar 28;8(4):1119-1127. doi: 10.1534/g3.117.300530.

5.

MAGNAMWAR: an R package for genome-wide association studies of bacterial orthologs.

Sexton CE, Smith HZ, Newell PD, Douglas AE, Chaston JM.

Bioinformatics. 2018 Jun 1;34(11):1951-1952. doi: 10.1093/bioinformatics/bty001.

6.

Draft Genome Sequence of Lactobacillus paracasei DmW181, a Bacterium Isolated from Wild Drosophila.

Hammer AJ, Walters A, Carroll C, Newell PD, Chaston JM.

Genome Announc. 2017 Jul 6;5(27). pii: e00545-17. doi: 10.1128/genomeA.00545-17.

7.

A genomic investigation of ecological differentiation between free-living and Drosophila-associated bacteria.

Winans NJ, Walter A, Chouaia B, Chaston JM, Douglas AE, Newell PD.

Mol Ecol. 2017 Sep;26(17):4536-4550. doi: 10.1111/mec.14232. Epub 2017 Jul 24.

8.

Genome Sequence of Weissella cibaria DmW_103, Isolated from Wild Drosophila.

Ricks NJ, Carroll C, Walters A, Newell PD, Chaston JM.

Genome Announc. 2017 Jun 15;5(24). pii: e00512-17. doi: 10.1128/genomeA.00512-17.

9.

Genome Sequence of Leuconostoc citreum DmW_111, Isolated from Wild Drosophila.

Wright SM, Carroll C, Walters A, Newell PD, Chaston JM.

Genome Announc. 2017 Jun 15;5(24). pii: e00507-17. doi: 10.1128/genomeA.00507-17.

10.

Erratum to: The Drosophila transcriptional network is structured by microbiota.

Dobson AJ, Chaston JM, Douglas AE.

BMC Genomics. 2017 Feb 1;18(1):124. doi: 10.1186/s12864-017-3508-x. No abstract available.

11.

The Drosophila transcriptional network is structured by microbiota.

Dobson AJ, Chaston JM, Douglas AE.

BMC Genomics. 2016 Nov 25;17(1):975. Erratum in: BMC Genomics. 2017 Feb 1;18(1):124.

12.

Rearing the Fruit Fly Drosophila melanogaster Under Axenic and Gnotobiotic Conditions.

Koyle ML, Veloz M, Judd AM, Wong AC, Newell PD, Douglas AE, Chaston JM.

J Vis Exp. 2016 Jul 30;(113). doi: 10.3791/54219.

13.

Host Genetic Control of the Microbiota Mediates the Drosophila Nutritional Phenotype.

Chaston JM, Dobson AJ, Newell PD, Douglas AE.

Appl Environ Microbiol. 2015 Nov 13;82(2):671-9. doi: 10.1128/AEM.03301-15. Print 2016 Jan 15.

14.

Corrigendum: Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster.

Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE.

Nat Commun. 2015 May 15;6:7296. doi: 10.1038/ncomms8296. No abstract available.

PMID:
25976209
15.

Host genetic determinants of microbiota-dependent nutrition revealed by genome-wide analysis of Drosophila melanogaster.

Dobson AJ, Chaston JM, Newell PD, Donahue L, Hermann SL, Sannino DR, Westmiller S, Wong AC, Clark AG, Lazzaro BP, Douglas AE.

Nat Commun. 2015 Feb 18;6:6312. doi: 10.1038/ncomms7312. Erratum in: Nat Commun. 2015;6:7296.

16.

In vivo function and comparative genomic analyses of the Drosophila gut microbiota identify candidate symbiosis factors.

Newell PD, Chaston JM, Wang Y, Winans NJ, Sannino DR, Wong AC, Dobson AJ, Kagle J, Douglas AE.

Front Microbiol. 2014 Nov 4;5:576. doi: 10.3389/fmicb.2014.00576. eCollection 2014.

17.

Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster.

Chaston JM, Newell PD, Douglas AE.

MBio. 2014 Sep 30;5(5):e01631-14. doi: 10.1128/mBio.01631-14.

18.

NilD CRISPR RNA contributes to Xenorhabdus nematophila colonization of symbiotic host nematodes.

Veesenmeyer JL, Andersen AW, Lu X, Hussa EA, Murfin KE, Chaston JM, Dillman AR, Wassarman KM, Sternberg PW, Goodrich-Blair H.

Mol Microbiol. 2014 Sep;93(5):1026-42. doi: 10.1111/mmi.12715. Epub 2014 Aug 6.

19.

The bacterial communities in plant phloem-sap-feeding insects.

Jing X, Wong AC, Chaston JM, Colvin J, McKenzie CL, Douglas AE.

Mol Ecol. 2014 Mar;23(6):1433-44. doi: 10.1111/mec.12637. Epub 2014 Jan 31.

PMID:
24350573
20.

The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis.

Wong AC, Chaston JM, Douglas AE.

ISME J. 2013 Oct;7(10):1922-32. doi: 10.1038/ismej.2013.86. Epub 2013 May 30.

21.

Previously unrecognized stages of species-specific colonization in the mutualism between Xenorhabdus bacteria and Steinernema nematodes.

Chaston JM, Murfin KE, Heath-Heckman EA, Goodrich-Blair H.

Cell Microbiol. 2013 Sep;15(9):1545-59. doi: 10.1111/cmi.12134. Epub 2013 Mar 27.

22.

An entomopathogenic nematode by any other name.

Dillman AR, Chaston JM, Adams BJ, Ciche TA, Goodrich-Blair H, Stock SP, Sternberg PW.

PLoS Pathog. 2012;8(3):e1002527. doi: 10.1371/journal.ppat.1002527. Epub 2012 Mar 1. No abstract available.

23.
24.

Phenotypic variation and host interactions of Xenorhabdus bovienii SS-2004, the entomopathogenic symbiont of Steinernema jollieti nematodes.

Sugar DR, Murfin KE, Chaston JM, Andersen AW, Richards GR, deLéon L, Baum JA, Clinton WP, Forst S, Goldman BS, Krasomil-Osterfeld KC, Slater S, Stock SP, Goodrich-Blair H.

Environ Microbiol. 2012 Apr;14(4):924-39. doi: 10.1111/j.1462-2920.2011.02663.x. Epub 2011 Dec 12.

25.

The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes.

Chaston JM, Suen G, Tucker SL, Andersen AW, Bhasin A, Bode E, Bode HB, Brachmann AO, Cowles CE, Cowles KN, Darby C, de Léon L, Drace K, Du Z, Givaudan A, Herbert Tran EE, Jewell KA, Knack JJ, Krasomil-Osterfeld KC, Kukor R, Lanois A, Latreille P, Leimgruber NK, Lipke CM, Liu R, Lu X, Martens EC, Marri PR, Médigue C, Menard ML, Miller NM, Morales-Soto N, Norton S, Ogier JC, Orchard SS, Park D, Park Y, Qurollo BA, Sugar DR, Richards GR, Rouy Z, Slominski B, Slominski K, Snyder H, Tjaden BC, van der Hoeven R, Welch RD, Wheeler C, Xiang B, Barbazuk B, Gaudriault S, Goodner B, Slater SC, Forst S, Goldman BS, Goodrich-Blair H.

PLoS One. 2011;6(11):e27909. doi: 10.1371/journal.pone.0027909. Epub 2011 Nov 18.

26.

Outcrossing and crossbreeding recovers deteriorated traits in laboratory cultured Steinernema carpocapsae nematodes.

Chaston JM, Dillman AR, Shapiro-Ilan DI, Bilgrami AL, Gaugler R, Hopper KR, Adams BJ.

Int J Parasitol. 2011 Jun;41(7):801-9. doi: 10.1016/j.ijpara.2011.02.005. Epub 2011 Apr 9.

27.

Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora.

Adhikari BN, Lin CY, Bai X, Ciche TA, Grewal PS, Dillman AR, Chaston JM, Shapiro-Ilan DI, Bilgrami AL, Gaugler R, Sternberg PW, Adams BJ.

BMC Genomics. 2009 Dec 15;10:609. doi: 10.1186/1471-2164-10-609.

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