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Items: 26

1.

Gene expression and promoter characterization of heat-shock protein 90B gene (HSP90B) in the model unicellular green alga Chlamydomonas reinhardtii.

Traewachiwiphak S, Yokthongwattana C, Ves-Urai P, Charoensawan V, Yokthongwattana K.

Plant Sci. 2018 Jul;272:107-116. doi: 10.1016/j.plantsci.2018.04.010. Epub 2018 Apr 17.

PMID:
29807581
2.

Chromatin Immunoprecipitation Sequencing (ChIP-Seq) for Transcription Factors and Chromatin Factors in Arabidopsis thaliana Roots: From Material Collection to Data Analysis.

Cortijo S, Charoensawan V, Roudier F, Wigge PA.

Methods Mol Biol. 2018;1761:231-248. doi: 10.1007/978-1-4939-7747-5_18.

PMID:
29525962
3.

Chloroplast Signaling Gates Thermotolerance in Arabidopsis.

Dickinson PJ, Kumar M, Martinho C, Yoo SJ, Lan H, Artavanis G, Charoensawan V, Schöttler MA, Bock R, Jaeger KE, Wigge PA.

Cell Rep. 2018 Feb 13;22(7):1657-1665. doi: 10.1016/j.celrep.2018.01.054.

4.

Transcriptional Regulation of the Ambient Temperature Response by H2A.Z Nucleosomes and HSF1 Transcription Factors in Arabidopsis.

Cortijo S, Charoensawan V, Brestovitsky A, Buning R, Ravarani C, Rhodes D, van Noort J, Jaeger KE, Wigge PA.

Mol Plant. 2017 Oct 9;10(10):1258-1273. doi: 10.1016/j.molp.2017.08.014. Epub 2017 Sep 8.

PMID:
28893714
5.

The G-Box Transcriptional Regulatory Code in Arabidopsis.

Ezer D, Shepherd SJK, Brestovitsky A, Dickinson P, Cortijo S, Charoensawan V, Box MS, Biswas S, Jaeger KE, Wigge PA.

Plant Physiol. 2017 Oct;175(2):628-640. doi: 10.1104/pp.17.01086. Epub 2017 Sep 1.

6.

The evening complex coordinates environmental and endogenous signals in Arabidopsis.

Ezer D, Jung JH, Lan H, Biswas S, Gregoire L, Box MS, Charoensawan V, Cortijo S, Lai X, Stöckle D, Zubieta C, Jaeger KE, Wigge PA.

Nat Plants. 2017 Jun 26;3:17087. doi: 10.1038/nplants.2017.87.

7.

Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research.

Jinawath N, Bunbanjerdsuk S, Chayanupatkul M, Ngamphaiboon N, Asavapanumas N, Svasti J, Charoensawan V.

J Transl Med. 2016 Nov 22;14(1):324. Review.

8.

Phytochromes function as thermosensors in Arabidopsis.

Jung JH, Domijan M, Klose C, Biswas S, Ezer D, Gao M, Khattak AK, Box MS, Charoensawan V, Cortijo S, Kumar M, Grant A, Locke JC, Schäfer E, Jaeger KE, Wigge PA.

Science. 2016 Nov 18;354(6314):886-889. Epub 2016 Oct 27.

PMID:
27789797
9.

MicroRNAs and oncogenic transcriptional regulatory networks controlling metabolic reprogramming in cancers.

Pinweha P, Rattanapornsompong K, Charoensawan V, Jitrapakdee S.

Comput Struct Biotechnol J. 2016 Jun 4;14:223-33. doi: 10.1016/j.csbj.2016.05.005. eCollection 2016. Review.

10.

Regulation of Meristem Morphogenesis by Cell Wall Synthases in Arabidopsis.

Yang W, Schuster C, Beahan CT, Charoensawan V, Peaucelle A, Bacic A, Doblin MS, Wightman R, Meyerowitz EM.

Curr Biol. 2016 Jun 6;26(11):1404-15. doi: 10.1016/j.cub.2016.04.026. Epub 2016 May 19.

11.

MANORAA (Mapping Analogous Nuclei Onto Residue And Affinity) for identifying protein-ligand fragment interaction, pathways and SNPs.

Tanramluk D, Narupiyakul L, Akavipat R, Gong S, Charoensawan V.

Nucleic Acids Res. 2016 Jul 8;44(W1):W514-21. doi: 10.1093/nar/gkw314. Epub 2016 Apr 29.

12.

High-Throughput Screening for Biomarker Discovery.

Janvilisri T, Suzuki H, Scaria J, Chen JW, Charoensawan V.

Dis Markers. 2015;2015:108064. doi: 10.1155/2015/108064. Epub 2015 Apr 28. No abstract available.

13.

"Hit-and-run": Transcription factors get caught in the act.

Charoensawan V, Martinho C, Wigge PA.

Bioessays. 2015 Jul;37(7):748-54. doi: 10.1002/bies.201400186. Epub 2015 May 21. Review.

PMID:
26010075
14.

Comparative analysis of sugarcane bagasse metagenome reveals unique and conserved biomass-degrading enzymes among lignocellulolytic microbial communities.

Mhuantong W, Charoensawan V, Kanokratana P, Tangphatsornruang S, Champreda V.

Biotechnol Biofuels. 2015 Feb 8;8:16. doi: 10.1186/s13068-015-0200-8. eCollection 2015.

15.

Copy number variation in Thai population.

Suktitipat B, Naktang C, Mhuantong W, Tularak T, Artiwet P, Pasomsap E, Jongjaroenprasert W, Fuchareon S, Mahasirimongkol S, Chantratita W, Yimwadsana B, Charoensawan V, Jinawath N.

PLoS One. 2014 Aug 13;9(8):e104355. doi: 10.1371/journal.pone.0104355. eCollection 2014.

16.

Toward mobile 3D visualization for structural biologists.

Tanramluk D, Akavipat R, Charoensawan V.

Mol Biosyst. 2013 Dec;9(12):2956-60. doi: 10.1039/c3mb70361d. Epub 2013 Oct 14.

PMID:
24126492
17.

RpoS and oxidative stress conditions regulate succinyl-CoA: 3-ketoacid-coenzyme A transferase (SCOT) expression in Burkholderia pseudomallei.

Chutoam P, Charoensawan V, Wongtrakoongate P, Kum-Arth A, Buphamalai P, Tungpradabkul S.

Microbiol Immunol. 2013 Sep;57(9):605-15. doi: 10.1111/1348-0421.12077.

18.

Uncovering the interplay between DNA sequence preferences of transcription factors and nucleosomes.

Teichmann SA, Wigge PA, Charoensawan V.

Cell Cycle. 2012 Dec 15;11(24):4487-8. doi: 10.4161/cc.22666. Epub 2012 Nov 19. No abstract available.

19.

DNA sequence preferences of transcriptional activators correlate more strongly than repressors with nucleosomes.

Charoensawan V, Janga SC, Bulyk ML, Babu MM, Teichmann SA.

Mol Cell. 2012 Jul 27;47(2):183-92. doi: 10.1016/j.molcel.2012.06.028.

20.

RNA sequencing reveals two major classes of gene expression levels in metazoan cells.

Hebenstreit D, Fang M, Gu M, Charoensawan V, van Oudenaarden A, Teichmann SA.

Mol Syst Biol. 2011 Jun 7;7:497. doi: 10.1038/msb.2011.28.

21.

The impact of gene expression regulation on evolution of extracellular signaling pathways.

Charoensawan V, Adryan B, Martin S, Söllner C, Thisse B, Thisse C, Wright GJ, Teichmann SA.

Mol Cell Proteomics. 2010 Dec;9(12):2666-77. doi: 10.1074/mcp.M110.003020. Epub 2010 Oct 8.

22.

Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling.

Martin S, Söllner C, Charoensawan V, Adryan B, Thisse B, Thisse C, Teichmann S, Wright GJ.

Mol Cell Proteomics. 2010 Dec;9(12):2654-65. doi: 10.1074/mcp.M110.004119. Epub 2010 Aug 27.

23.

Genomic repertoires of DNA-binding transcription factors across the tree of life.

Charoensawan V, Wilson D, Teichmann SA.

Nucleic Acids Res. 2010 Nov;38(21):7364-77. doi: 10.1093/nar/gkq617. Epub 2010 Jul 30. Review.

24.

Lineage-specific expansion of DNA-binding transcription factor families.

Charoensawan V, Wilson D, Teichmann SA.

Trends Genet. 2010 Sep;26(9):388-93. doi: 10.1016/j.tig.2010.06.004. Epub 2010 Jul 31.

25.

Interfacing systems biology and synthetic biology.

Lister A, Charoensawan V, De S, James K, Janga SC, Huppert J.

Genome Biol. 2009;10(6):309. doi: 10.1186/gb-2009-10-6-309. Epub 2009 Jun 26.

26.

DBD--taxonomically broad transcription factor predictions: new content and functionality.

Wilson D, Charoensawan V, Kummerfeld SK, Teichmann SA.

Nucleic Acids Res. 2008 Jan;36(Database issue):D88-92. Epub 2007 Dec 11.

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