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Items: 23

1.

GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates.

Stoeckle MY, Das Mishu M, Charlop-Powers Z.

PLoS One. 2018 Dec 11;13(12):e0198717. doi: 10.1371/journal.pone.0198717. eCollection 2018.

2.

Culture-independent discovery of the malacidins as calcium-dependent antibiotics with activity against multidrug-resistant Gram-positive pathogens.

Hover BM, Kim SH, Katz M, Charlop-Powers Z, Owen JG, Ternei MA, Maniko J, Estrela AB, Molina H, Park S, Perlin DS, Brady SF.

Nat Microbiol. 2018 Apr;3(4):415-422. doi: 10.1038/s41564-018-0110-1. Epub 2018 Feb 12.

3.

Bacterial natural product biosynthetic domain composition in soil correlates with changes in latitude on a continent-wide scale.

Lemetre C, Maniko J, Charlop-Powers Z, Sparrow B, Lowe AJ, Brady SF.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):11615-11620. doi: 10.1073/pnas.1710262114. Epub 2017 Oct 18.

4.

Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary.

Stoeckle MY, Soboleva L, Charlop-Powers Z.

PLoS One. 2017 Apr 12;12(4):e0175186. doi: 10.1371/journal.pone.0175186. eCollection 2017.

5.

Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity.

Charlop-Powers Z, Pregitzer CC, Lemetre C, Ternei MA, Maniko J, Hover BM, Calle PY, McGuire KL, Garbarino J, Forgione HM, Charlop-Powers S, Brady SF.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14811-14816. doi: 10.1073/pnas.1615581113. Epub 2016 Nov 28.

6.

Biotechnological potential of Actinobacteria from Canadian and Azorean volcanic caves.

Riquelme C, Enes Dapkevicius ML, Miller AZ, Charlop-Powers Z, Brady S, Mason C, Cheeptham N.

Appl Microbiol Biotechnol. 2017 Jan;101(2):843-857. doi: 10.1007/s00253-016-7932-7. Epub 2016 Nov 3.

PMID:
27812802
7.

Discovery of MRSA active antibiotics using primary sequence from the human microbiome.

Chu J, Vila-Farres X, Inoyama D, Ternei M, Cohen LJ, Gordon EA, Reddy BV, Charlop-Powers Z, Zebroski HA, Gallardo-Macias R, Jaskowski M, Satish S, Park S, Perlin DS, Freundlich JS, Brady SF.

Nat Chem Biol. 2016 Dec;12(12):1004-1006. doi: 10.1038/nchembio.2207. Epub 2016 Oct 17.

8.

Multiplexed CRISPR/Cas9- and TAR-Mediated Promoter Engineering of Natural Product Biosynthetic Gene Clusters in Yeast.

Kang HS, Charlop-Powers Z, Brady SF.

ACS Synth Biol. 2016 Sep 16;5(9):1002-10. doi: 10.1021/acssynbio.6b00080. Epub 2016 Jun 10.

9.

Yeast homologous recombination-based promoter engineering for the activation of silent natural product biosynthetic gene clusters.

Montiel D, Kang HS, Chang FY, Charlop-Powers Z, Brady SF.

Proc Natl Acad Sci U S A. 2015 Jul 21;112(29):8953-8. doi: 10.1073/pnas.1507606112. Epub 2015 Jul 6.

10.

phylogeo: an R package for geographic analysis and visualization of microbiome data.

Charlop-Powers Z, Brady SF.

Bioinformatics. 2015 Sep 1;31(17):2909-11. doi: 10.1093/bioinformatics/btv269. Epub 2015 Apr 25.

11.

Multiplexed metagenome mining using short DNA sequence tags facilitates targeted discovery of epoxyketone proteasome inhibitors.

Owen JG, Charlop-Powers Z, Smith AG, Ternei MA, Calle PY, Reddy BV, Montiel D, Brady SF.

Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4221-6. doi: 10.1073/pnas.1501124112. Epub 2015 Mar 23.

12.

Global biogeographic sampling of bacterial secondary metabolism.

Charlop-Powers Z, Owen JG, Reddy BV, Ternei MA, GuimarĂ£es DO, de Frias UA, Pupo MT, Seepe P, Feng Z, Brady SF.

Elife. 2015 Jan 19;4:e05048. doi: 10.7554/eLife.05048.

13.

eSNaPD: a versatile, web-based bioinformatics platform for surveying and mining natural product biosynthetic diversity from metagenomes.

Reddy BV, Milshteyn A, Charlop-Powers Z, Brady SF.

Chem Biol. 2014 Aug 14;21(8):1023-33. doi: 10.1016/j.chembiol.2014.06.007. Epub 2014 Jul 24.

14.

Metagenomic small molecule discovery methods.

Charlop-Powers Z, Milshteyn A, Brady SF.

Curr Opin Microbiol. 2014 Jun;19:70-75. doi: 10.1016/j.mib.2014.05.021. Epub 2014 Jul 5.

15.

Chemical-biogeographic survey of secondary metabolism in soil.

Charlop-Powers Z, Owen JG, Reddy BV, Ternei MA, Brady SF.

Proc Natl Acad Sci U S A. 2014 Mar 11;111(10):3757-62. doi: 10.1073/pnas.1318021111. Epub 2014 Feb 18.

16.

Mapping gene clusters within arrayed metagenomic libraries to expand the structural diversity of biomedically relevant natural products.

Owen JG, Reddy BV, Ternei MA, Charlop-Powers Z, Calle PY, Kim JH, Brady SF.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):11797-802. doi: 10.1073/pnas.1222159110. Epub 2013 Jul 3.

17.

Selective enrichment of environmental DNA libraries for genes encoding nonribosomal peptides and polyketides by phosphopantetheine transferase-dependent complementation of siderophore biosynthesis.

Charlop-Powers Z, Banik JJ, Owen JG, Craig JW, Brady SF.

ACS Chem Biol. 2013 Jan 18;8(1):138-43. doi: 10.1021/cb3004918. Epub 2012 Oct 26.

18.

Natural product biosynthetic gene diversity in geographically distinct soil microbiomes.

Reddy BV, Kallifidas D, Kim JH, Charlop-Powers Z, Feng Z, Brady SF.

Appl Environ Microbiol. 2012 May;78(10):3744-52. doi: 10.1128/AEM.00102-12. Epub 2012 Mar 16.

19.

Paramecium bursaria chlorella virus 1 encodes a polyamine acetyltransferase.

Charlop-Powers Z, Jakoncic J, Gurnon JR, Van Etten JL, Zhou MM.

J Biol Chem. 2012 Mar 16;287(12):9547-51. doi: 10.1074/jbc.C111.337816. Epub 2012 Jan 25.

20.

Structural insights into selective histone H3 recognition by the human Polybromo bromodomain 2.

Charlop-Powers Z, Zeng L, Zhang Q, Zhou MM.

Cell Res. 2010 May;20(5):529-38. doi: 10.1038/cr.2010.43. Epub 2010 Apr 6.

21.

The major glycoprotein allergen from Arachis hypogaea, Ara h 1, is a ligand of dendritic cell-specific ICAM-grabbing nonintegrin and acts as a Th2 adjuvant in vitro.

Shreffler WG, Castro RR, Kucuk ZY, Charlop-Powers Z, Grishina G, Yoo S, Burks AW, Sampson HA.

J Immunol. 2006 Sep 15;177(6):3677-85.

22.

Transcytosis of IgE-antigen complexes by CD23a in human intestinal epithelial cells and its role in food allergy.

Li H, Nowak-Wegrzyn A, Charlop-Powers Z, Shreffler W, Chehade M, Thomas S, Roda G, Dahan S, Sperber K, Berin MC.

Gastroenterology. 2006 Jul;131(1):47-58.

PMID:
16831589
23.

Lack of association of HLA class II alleles with peanut allergy.

Shreffler WG, Charlop-Powers Z, Sicherer SH.

Ann Allergy Asthma Immunol. 2006 Jun;96(6):865-9.

PMID:
16802776

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