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Items: 1 to 50 of 79

1.

Enhanced Arsenic Tolerance in Triticum aestivum Inoculated with Arsenic-Resistant and Plant Growth Promoter Microorganisms from a Heavy Metal-Polluted Soil.

Soto J, Ortiz J, Herrera H, Fuentes A, Almonacid L, Charles TC, Arriagada C.

Microorganisms. 2019 Sep 12;7(9). pii: E348. doi: 10.3390/microorganisms7090348.

2.

Designer Sinorhizobium meliloti strains and multi-functional vectors enable direct inter-kingdom DNA transfer.

Brumwell SL, MacLeod MR, Huang T, Cochrane RR, Meaney RS, Zamani M, Matysiakiewicz O, Dan KN, Janakirama P, Edgell DR, Charles TC, Finan TM, Karas BJ.

PLoS One. 2019 Jun 17;14(6):e0206781. doi: 10.1371/journal.pone.0206781. eCollection 2019. Erratum in: PLoS One. 2019 Jul 9;14(7):e0219562.

3.

An engineered GFP fluorescent bacterial biosensor for detecting and quantifying silver and copper ions.

Martinez AR, Heil JR, Charles TC.

Biometals. 2019 Apr;32(2):265-272. doi: 10.1007/s10534-019-00179-3. Epub 2019 Feb 13.

PMID:
30756218
4.

Developing a Bacteroides System for Function-Based Screening of DNA from the Human Gut Microbiome.

Lam KN, Martens EC, Charles TC.

mSystems. 2018 Mar 27;3(3). pii: e00195-17. doi: 10.1128/mSystems.00195-17. eCollection 2018 May-Jun.

5.

The Completed PacBio Single-Molecule Real-Time Sequence of Methylosinus trichosporium Strain OB3b Reveals the Presence of a Third Large Plasmid.

Heil JR, Lynch MDJ, Cheng J, Matysiakiewicz O, D'Alessio M, Charles TC.

Genome Announc. 2017 Dec 7;5(49). pii: e01349-17. doi: 10.1128/genomeA.01349-17.

6.

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in Sinorhizobium meliloti.

D'Alessio M, Nordeste R, Doxey AC, Charles TC.

mSystems. 2017 Sep 12;2(5). pii: e00035-17. doi: 10.1128/mSystems.00035-17. eCollection 2017 Sep-Oct.

7.

Discovery of a proteolytic flagellin family in diverse bacterial phyla that assembles enzymatically active flagella.

Eckhard U, Bandukwala H, Mansfield MJ, Marino G, Cheng J, Wallace I, Holyoak T, Charles TC, Austin J, Overall CM, Doxey AC.

Nat Commun. 2017 Sep 12;8(1):521. doi: 10.1038/s41467-017-00599-0.

8.

Functional metagenomics reveals novel β-galactosidases not predictable from gene sequences.

Cheng J, Romantsov T, Engel K, Doxey AC, Rose DR, Neufeld JD, Charles TC.

PLoS One. 2017 Mar 8;12(3):e0172545. doi: 10.1371/journal.pone.0172545. eCollection 2017.

9.

Metagenomic Approaches to Identify Novel Organisms from the Soil Environment in a Classroom Setting.

Rahman SJ, Charles TC, Kaur P.

J Microbiol Biol Educ. 2016 Dec 2;17(3):423-429. doi: 10.1128/jmbe.v17i3.1115. eCollection 2016 Dec.

10.

Methods for the Isolation of Genes Encoding Novel PHA Metabolism Enzymes from Complex Microbial Communities.

Cheng J, Nordeste R, Trainer MA, Charles TC.

Methods Mol Biol. 2017;1539:237-248.

PMID:
27900694
11.

Elucidation of gibberellin biosynthesis in bacteria reveals convergent evolution.

Nett RS, Montanares M, Marcassa A, Lu X, Nagel R, Charles TC, Hedden P, Rojas MC, Peters RJ.

Nat Chem Biol. 2017 Jan;13(1):69-74. doi: 10.1038/nchembio.2232. Epub 2016 Nov 14.

12.

Engineering of Escherichia coli for direct and modulated biosynthesis of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) copolymer using unrelated carbon sources.

Srirangan K, Liu X, Tran TT, Charles TC, Moo-Young M, Chou CP.

Sci Rep. 2016 Nov 7;6:36470. doi: 10.1038/srep36470.

13.

Novel polyhydroxyalkanoate copolymers produced in Pseudomonas putida by metagenomic polyhydroxyalkanoate synthases.

Cheng J, Charles TC.

Appl Microbiol Biotechnol. 2016 Sep;100(17):7611-27. doi: 10.1007/s00253-016-7666-6. Epub 2016 Jun 23.

PMID:
27333909
14.

An analysis of the validity and utility of the proximon proposition.

Vey G, Charles TC.

Funct Integr Genomics. 2016 Mar;16(2):215-20. doi: 10.1007/s10142-016-0478-z. Epub 2016 Feb 2.

PMID:
26839085
15.

Genome-engineered Sinorhizobium meliloti for the production of poly(lactic-co-3-hydroxybutyric) acid copolymer.

Tran TT, Charles TC.

Can J Microbiol. 2016 Feb;62(2):130-8. doi: 10.1139/cjm-2015-0255. Epub 2015 Nov 5.

PMID:
26639519
16.

Current and future resources for functional metagenomics.

Lam KN, Cheng J, Engel K, Neufeld JD, Charles TC.

Front Microbiol. 2015 Oct 29;6:1196. doi: 10.3389/fmicb.2015.01196. eCollection 2015.

17.

Strong spurious transcription likely contributes to DNA insert bias in typical metagenomic clone libraries.

Lam KN, Charles TC.

Microbiome. 2015 May 20;3:22. doi: 10.1186/s40168-015-0086-5. eCollection 2015.

18.

MetaProx: the database of metagenomic proximons.

Vey G, Charles TC.

Database (Oxford). 2014 Oct 6;2014. pii: bau097. doi: 10.1093/database/bau097. Print 2014.

19.

Multisubstrate isotope labeling and metagenomic analysis of active soil bacterial communities.

Verastegui Y, Cheng J, Engel K, Kolczynski D, Mortimer S, Lavigne J, Montalibet J, Romantsov T, Hall M, McConkey BJ, Rose DR, Tomashek JJ, Scott BR, Charles TC, Neufeld JD.

MBio. 2014 Jul 15;5(4):e01157-14. doi: 10.1128/mBio.01157-14.

20.

Evaluation of a pooled strategy for high-throughput sequencing of cosmid clones from metagenomic libraries.

Lam KN, Hall MW, Engel K, Vey G, Cheng J, Neufeld JD, Charles TC.

PLoS One. 2014 Jun 9;9(6):e98968. doi: 10.1371/journal.pone.0098968. eCollection 2014.

21.

Amelioration of high salinity stress damage by plant growth-promoting bacterial endophytes that contain ACC deaminase.

Ali S, Charles TC, Glick BR.

Plant Physiol Biochem. 2014 Jul;80:160-7. doi: 10.1016/j.plaphy.2014.04.003. Epub 2014 Apr 18.

PMID:
24769617
22.

A bioinformatics approach to the determination of genes involved in endophytic behavior in Burkholderia spp.

Ali S, Duan J, Charles TC, Glick BR.

J Theor Biol. 2014 Feb 21;343:193-8.

PMID:
24513137
23.

Versatile broad-host-range cosmids for construction of high quality metagenomic libraries.

Cheng J, Pinnell L, Engel K, Neufeld JD, Charles TC.

J Microbiol Methods. 2014 Apr;99:27-34. doi: 10.1016/j.mimet.2014.01.015. Epub 2014 Feb 1.

PMID:
24495694
24.

Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.

25.

Members of the Sinorhizobium meliloti ChvI regulon identified by a DNA binding screen.

Bélanger L, Charles TC.

BMC Microbiol. 2013 Jun 13;13:132. doi: 10.1186/1471-2180-13-132.

26.

Delay of flower senescence by bacterial endophytes expressing 1-aminocyclopropane-1-carboxylate deaminase.

Ali S, Charles TC, Glick BR.

J Appl Microbiol. 2012 Nov;113(5):1139-44. doi: 10.1111/j.1365-2672.2012.05409.x. Epub 2012 Aug 21.

27.

Site-specific bacterial chromosome engineering: ΦC31 integrase mediated cassette exchange (IMCE).

Heil JR, Cheng J, Charles TC.

J Vis Exp. 2012 Mar 16;(61). pii: 3698. doi: 10.3791/3698.

28.

Open resource metagenomics: a model for sharing metagenomic libraries.

Neufeld JD, Engel K, Cheng J, Moreno-Hagelsieb G, Rose DR, Charles TC.

Stand Genomic Sci. 2011 Nov 30;5(2):203-10. doi: 10.4056/sigs.1974654. Epub 2011 Nov 23.

29.

Nonlinear electrophoresis for purification of soil DNA for metagenomics.

Engel K, Pinnell L, Cheng J, Charles TC, Neufeld JD.

J Microbiol Methods. 2012 Jan;88(1):35-40. doi: 10.1016/j.mimet.2011.10.007. Epub 2011 Oct 26.

PMID:
22056233
30.

Harvesting of novel polyhydroxyalkanaote (PHA) synthase encoding genes from a soil metagenome library using phenotypic screening.

Schallmey M, Ly A, Wang C, Meglei G, Voget S, Streit WR, Driscoll BT, Charles TC.

FEMS Microbiol Lett. 2011 Aug;321(2):150-6. doi: 10.1111/j.1574-6968.2011.02324.x. Epub 2011 Jun 23.

31.

The fluorescence theatre: a cost-effective device using theatre gels for fluorescent protein and dye screening.

Heil JR, Nordeste RF, Charles TC.

Can J Microbiol. 2011 Apr;57(4):339-42. doi: 10.1139/w11-010.

PMID:
21491986
32.

ACC deaminase activity in avirulent Agrobacterium tumefaciens D3.

Hao Y, Charles TC, Glick BR.

Can J Microbiol. 2011 Apr;57(4):278-86. doi: 10.1139/w11-006.

PMID:
21491979
33.

Methods for the isolation of genes encoding novel PHB cycle enzymes from complex microbial communities.

Nordeste RF, Trainer MA, Charles TC.

Methods Mol Biol. 2010;668:235-46. doi: 10.1007/978-1-60761-823-2_16.

PMID:
20830568
34.

ACC deaminase increases the Agrobacterium tumefaciens-mediated transformation frequency of commercial canola cultivars.

Hao Y, Charles TC, Glick BR.

FEMS Microbiol Lett. 2010 Jun;307(2):185-90. doi: 10.1111/j.1574-6968.2010.01977.x.

35.

Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti.

Trainer MA, Capstick D, Zachertowska A, Lam KN, Clark SR, Charles TC.

BMC Microbiol. 2010 Mar 27;10:92. doi: 10.1186/1471-2180-10-92.

36.

Sinorhizobium meliloti 1021 loss-of-function deletion mutation in chvI and its phenotypic characteristics.

Wang C, Kemp J, Da Fonseca IO, Equi RC, Sheng X, Charles TC, Sobral BW.

Mol Plant Microbe Interact. 2010 Feb;23(2):153-60. doi: 10.1094/MPMI-23-2-0153.

37.

Null mutations in Sinorhizobium meliloti exoS and chvI demonstrate the importance of this two-component regulatory system for symbiosis.

Bélanger L, Dimmick KA, Fleming JS, Charles TC.

Mol Microbiol. 2009 Dec;74(5):1223-37. doi: 10.1111/j.1365-2958.2009.06931.x. Epub 2009 Oct 19.

38.

Identification and characterization of new LuxR/LuxI-type quorum sensing systems from metagenomic libraries.

Hao Y, Winans SC, Glick BR, Charles TC.

Environ Microbiol. 2010 Jan;12(1):105-17. doi: 10.1111/j.1462-2920.2009.02049.x. Epub 2009 Sep 4.

39.

1-aminocyclopropane-1-carboxylate (ACC) deaminase genes in rhizobia from southern Saskatchewan.

Duan J, Müller KM, Charles TC, Vesely S, Glick BR.

Microb Ecol. 2009 Apr;57(3):423-36. doi: 10.1007/s00248-008-9407-6. Epub 2008 Jun 12. Erratum in: Microb Ecol. 2009 Apr;57(3):421-2.

PMID:
18548183
40.

Mutational analysis of the Sinorhizobium meliloti short-chain dehydrogenase/reductase family reveals substantial contribution to symbiosis and catabolic diversity.

Jacob AI, Adham SA, Capstick DS, Clark SR, Spence T, Charles TC.

Mol Plant Microbe Interact. 2008 Jul;21(7):979-87. doi: 10.1094/MPMI-21-7-0979.

41.

ACC deaminase from plant growth-promoting bacteria affects crown gall development.

Hao Y, Charles TC, Glick BR.

Can J Microbiol. 2007 Dec;53(12):1291-9.

PMID:
18059561
42.
43.

Roles of poly-3-hydroxybutyrate (PHB) and glycogen in symbiosis of Sinorhizobium meliloti with Medicago sp.

Wang C, Saldanha M, Sheng X, Shelswell KJ, Walsh KT, Sobral BW, Charles TC.

Microbiology. 2007 Feb;153(Pt 2):388-98.

PMID:
17259610
44.

Effects of nitrogen and phosphorus limitation on the activated sludge biomass in a kraft mill biotreatment system.

Bhathena J, Driscoll BT, Charles TC, Archibald FS.

Water Environ Res. 2006 Nov;78(12):2303-10.

PMID:
17243229
45.

Presence of a novel 16S-23S rRNA gene intergenic spacer insert in Bradyrhizobium canariense strains.

Safronova V, Chizhevskaya E, Bullitta S, Andronov E, Belimov A, Charles TC, Lindström K.

FEMS Microbiol Lett. 2007 Apr;269(2):207-12. Epub 2007 Jan 15.

46.

The role of PHB metabolism in the symbiosis of rhizobia with legumes.

Trainer MA, Charles TC.

Appl Microbiol Biotechnol. 2006 Jul;71(4):377-86. Epub 2006 May 16. Review.

PMID:
16703322
47.

A novel bacteriocin, thuricin 17, produced by plant growth promoting rhizobacteria strain Bacillus thuringiensis NEB17: isolation and classification.

Gray EJ, Lee KD, Souleimanov AM, Di Falco MR, Zhou X, Ly A, Charles TC, Driscoll BT, Smith DL.

J Appl Microbiol. 2006 Mar;100(3):545-54.

48.

Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants.

Wang C, Meek DJ, Panchal P, Boruvka N, Archibald FS, Driscoll BT, Charles TC.

Appl Environ Microbiol. 2006 Jan;72(1):384-91.

49.
50.

NodMutDB: a database for genes and mutants involved in symbiosis.

Mao C, Qiu J, Wang C, Charles TC, Sobral BW.

Bioinformatics. 2005 Jun 15;21(12):2927-9. Epub 2005 Apr 7.

PMID:
15817696

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