Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 53

1.

Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection.

Lambert C, Braxton C, Charlebois RL, Deyati A, Duncan P, La Neve F, Malicki HD, Ribrioux S, Rozelle DK, Michaels B, Sun W, Yang Z, Khan AS.

Viruses. 2018 Sep 27;10(10). pii: E528. doi: 10.3390/v10100528.

2.

A Multicenter Study To Evaluate the Performance of High-Throughput Sequencing for Virus Detection.

Khan AS, Ng SHS, Vandeputte O, Aljanahi A, Deyati A, Cassart JP, Charlebois RL, Taliaferro LP.

mSphere. 2017 Sep 13;2(5). pii: e00307-17. doi: 10.1128/mSphere.00307-17. eCollection 2017 Sep-Oct.

3.

Advanced Virus Detection Technologies Interest Group (AVDTIG): Efforts on High Throughput Sequencing (HTS) for Virus Detection.

Khan AS, Vacante DA, Cassart JP, Ng SH, Lambert C, Charlebois RL, King KE.

PDA J Pharm Sci Technol. 2016 11/12;70(6):591-595. Epub 2016 Sep 4.

PMID:
27593693
4.

Correction for Lam et al., antibodies to PhnD inhibit staphylococcal biofilms.

Lam H, Kesselly A, Stegalkina S, Charlebois RL, Oomen R, Kleanthous H, Yethon JA.

Infect Immun. 2015 May;83(5):2197. doi: 10.1128/IAI.00285-15. No abstract available.

5.

Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection.

Charlebois RL, Ng SH, Gisonni-Lex L, Mallet L.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):602-18. doi: 10.5731/pdajpst.2014.01023.

PMID:
25475635
6.

Preliminary Evaluation of Next-Generation Sequencing Performance Relative to qPCR and In Vitro Cell Culture Tests for Human Cytomegalovirus.

Ng SH, Azizi A, Edamura K, Malott RJ, Charlebois RL, Logvinoff C, Schreiber M, Mallet L, Gisonni-Lex L.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):563-71. doi: 10.5731/pdajpst.2014.01013.

PMID:
25475630
7.

Coevolution reveals a network of human proteins originating with multicellularity.

Bezginov A, Clark GW, Charlebois RL, Dar VU, Tillier ER.

Mol Biol Evol. 2013 Feb;30(2):332-46. doi: 10.1093/molbev/mss218. Epub 2012 Sep 12.

8.

Using coevolution to predict protein-protein interactions.

Clark GW, Dar VU, Bezginov A, Yang JM, Charlebois RL, Tillier ER.

Methods Mol Biol. 2011;781:237-56. doi: 10.1007/978-1-61779-276-2_11.

PMID:
21877284
9.

The human protein coevolution network.

Tillier ER, Charlebois RL.

Genome Res. 2009 Oct;19(10):1861-71. doi: 10.1101/gr.092452.109. Epub 2009 Aug 20.

10.

The impact of reticulate evolution on genome phylogeny.

Beiko RG, Doolittle WF, Charlebois RL.

Syst Biol. 2008 Dec;57(6):844-56. doi: 10.1080/10635150802559265.

PMID:
19085328
11.

Integron-associated gene cassettes in Halifax Harbour: assessment of a mobile gene pool in marine sediments.

Koenig JE, Boucher Y, Charlebois RL, Nesbø C, Zhaxybayeva O, Bapteste E, Spencer M, Joss MJ, Stokes HW, Doolittle WF.

Environ Microbiol. 2008 Apr;10(4):1024-38. doi: 10.1111/j.1462-2920.2007.01524.x. Epub 2008 Jan 7.

PMID:
18190517
12.

A simulation test bed for hypotheses of genome evolution.

Beiko RG, Charlebois RL.

Bioinformatics. 2007 Apr 1;23(7):825-31. Epub 2007 Jan 31.

PMID:
17267425
13.

Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events.

Zhaxybayeva O, Gogarten JP, Charlebois RL, Doolittle WF, Papke RT.

Genome Res. 2006 Sep;16(9):1099-108. Epub 2006 Aug 9.

14.

Ancient lateral gene transfer in the evolution of Bdellovibrio bacteriovorus.

Gophna U, Charlebois RL, Doolittle WF.

Trends Microbiol. 2006 Feb;14(2):64-9. Epub 2006 Jan 18.

PMID:
16413191
15.

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

Mongodin EF, Nelson KE, Daugherty S, Deboy RT, Wister J, Khouri H, Weidman J, Walsh DA, Papke RT, Sanchez Perez G, Sharma AK, Nesbø CL, MacLeod D, Bapteste E, Doolittle WF, Charlebois RL, Legault B, Rodriguez-Valera F.

Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):18147-52. Epub 2005 Dec 5.

16.

The two tempos of nuclear pore complex evolution: highly adapting proteins in an ancient frozen structure.

Bapteste E, Charlebois RL, MacLeod D, Brochier C.

Genome Biol. 2005;6(10):R85. Epub 2005 Sep 30.

17.

Do orthologous gene phylogenies really support tree-thinking?

Bapteste E, Susko E, Leigh J, MacLeod D, Charlebois RL, Doolittle WF.

BMC Evol Biol. 2005 May 24;5:33.

18.
19.
20.

Weighted genome trees: refinements and applications.

Gophna U, Doolittle WF, Charlebois RL.

J Bacteriol. 2005 Feb;187(4):1305-16.

21.

Computing prokaryotic gene ubiquity: rescuing the core from extinction.

Charlebois RL, Doolittle WF.

Genome Res. 2004 Dec;14(12):2469-77.

22.

Have archaeal genes contributed to bacterial virulence?

Gophna U, Charlebois RL, Doolittle WF.

Trends Microbiol. 2004 May;12(5):213-9. Review. No abstract available.

PMID:
15120140
23.

Characterization of species-specific genes using a flexible, web-based querying system.

Charlebois RL, Clarke GD, Beiko RG, St Jean A.

FEMS Microbiol Lett. 2003 Aug 29;225(2):213-20.

24.

Microbial phylogenomics: Branching out.

Charlebois RL, Beiko RG, Ragan MA.

Nature. 2003 Jan 16;421(6920):217. No abstract available.

PMID:
12529621
25.
27.

The complete genome of the crenarchaeon Sulfolobus solfataricus P2.

She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, Chan-Weiher CC, Clausen IG, Curtis BA, De Moors A, Erauso G, Fletcher C, Gordon PM, Heikamp-de Jong I, Jeffries AC, Kozera CJ, Medina N, Peng X, Thi-Ngoc HP, Redder P, Schenk ME, Theriault C, Tolstrup N, Charlebois RL, Doolittle WF, Duguet M, Gaasterland T, Garrett RA, Ragan MA, Sensen CW, Van der Oost J.

Proc Natl Acad Sci U S A. 2001 Jul 3;98(14):7835-40. Epub 2001 Jun 26.

28.

Identification and molecular characterization of the first alpha -xylosidase from an archaeon.

Moracci M, Cobucci Ponzano B, Trincone A, Fusco S, De Rosa M, van Der Oost J, Sensen CW, Charlebois RL, Rossi M.

J Biol Chem. 2000 Jul 21;275(29):22082-9.

29.

Gene content and organization of a 281-kbp contig from the genome of the extremely thermophilic archaeon, Sulfolobus solfataricus P2.

Charlebois RL, Singh RK, Chan-Weiher CC, Allard G, Chow C, Confalonieri F, Curtis B, Duguet M, Erauso G, Faguy D, Gaasterland T, Garrett RA, Gordon P, Jeffries AC, Kozera C, Kushwaha N, Lafleur E, Medina N, Peng X, Penny SL, She Q, St Jean A, van der Oost J, Young F, Zivanovic Y, Doolittle WF, Ragan MA, Sensen CW.

Genome. 2000 Feb;43(1):116-36.

PMID:
10701121
30.

Two DNA polymerase sliding clamps from the thermophilic archaeon Sulfolobus solfataricus.

De Felice M, Sensen CW, Charlebois RL, Rossi M, Pisani FM.

J Mol Biol. 1999 Aug 6;291(1):47-57.

PMID:
10438605
31.
32.

Glucose transport in the extremely thermoacidophilic Sulfolobus solfataricus involves a high-affinity membrane-integrated binding protein.

Albers SV, Elferink MG, Charlebois RL, Sensen CW, Driessen AJ, Konings WN.

J Bacteriol. 1999 Jul;181(14):4285-91.

33.

Sulfolobus genome: from genomics to biology.

Charlebois RL, She Q, Sprott DP, Sensen CW, Garrett RA.

Curr Opin Microbiol. 1998 Oct;1(5):584-8. Review.

PMID:
10066534
34.

An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter.

Napoli A, van der Oost J, Sensen CW, Charlebois RL, Rossi M, Ciaramella M.

J Bacteriol. 1999 Mar;181(5):1474-80.

35.

Completing the sequence of the Sulfolobus solfataricus P2 genome.

Sensen CW, Charlebois RL, Chow C, Clausen IG, Curtis B, Doolittle WF, Duguet M, Erauso G, Gaasterland T, Garrett RA, Gordon P, de Jong IH, Jeffries AC, Kozera C, Medina N, De Moors A, van der Oost J, Phan H, Ragan MA, Schenk ME, She Q, Singh RK, Tolstrup N.

Extremophiles. 1998 Aug;2(3):305-12. Review.

PMID:
9783178
36.

Characterization of two heat shock genes from Haloferax volcanii: a model system for transcription regulation in the Archaea.

Kuo YP, Thompson DK, St Jean A, Charlebois RL, Daniels CJ.

J Bacteriol. 1997 Oct;179(20):6318-24.

37.

Evolutionary analysis of the hisCGABdFDEHI gene cluster from the archaeon Sulfolobus solfataricus P2.

Charlebois RL, Sensen CW, Doolittle WF, Brown JR.

J Bacteriol. 1997 Jul;179(13):4429-32.

38.

An archaebacterial homolog of pelota, a meiotic cell division protein in eukaryotes.

Ragan MA, Logsdon JM Jr, Sensen CW, Charlebois RL, Doolittle WF.

FEMS Microbiol Lett. 1996 Nov 1;144(2-3):151-5.

PMID:
8900058
39.

Organizational characteristics and information content of an archaeal genome: 156 kb of sequence from Sulfolobus solfataricus P2.

Sensen CW, Klenk HP, Singh RK, Allard G, Chan CC, Liu QY, Penny SL, Young F, Schenk ME, Gaasterland T, Doolittle WF, Ragan MA, Charlebois RL.

Mol Microbiol. 1996 Oct;22(1):175-91.

PMID:
8899719
42.

The Sulfolobus solfataricus P2 genome project.

Charlebois RL, Gaasterland T, Ragan MA, Doolittle WF, Sensen CW.

FEBS Lett. 1996 Jun 24;389(1):88-91. Review.

43.

Supercoiling and map stability in the bacterial chromosome.

Charlebois RL, St Jean A.

J Mol Evol. 1995 Jul;41(1):15-23.

PMID:
7608985
44.

Genomic stability in the archaeae Haloferax volcanii and Haloferax mediterranei.

López-García P, St Jean A, Amils R, Charlebois RL.

J Bacteriol. 1995 Mar;177(5):1405-8.

45.

Archaebacterial genomes: eubacterial form and eukaryotic content.

Keeling PJ, Charlebois RL, Doolittle WF.

Curr Opin Genet Dev. 1994 Dec;4(6):816-22. Review.

PMID:
7888750
46.

Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB.

St Jean A, Trieselmann BA, Charlebois RL.

Nucleic Acids Res. 1994 Apr 25;22(8):1476-83.

47.

Localizing genes on the map of the genome of Haloferax volcanii, one of the Archaea.

Cohen A, Lam WL, Charlebois RL, Doolittle WF, Schalkwyk LC.

Proc Natl Acad Sci U S A. 1992 Mar 1;89(5):1602-6.

48.
49.

Progress in developing the genetics of the halobacteria.

Doolittle WF, Lam WL, Schalkwyk LC, Charlebois RL, Cline SW, Cohen A.

Biochem Soc Symp. 1992;58:73-8. Review. No abstract available.

PMID:
1445412
50.

Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2.

Charlebois RL, Schalkwyk LC, Hofman JD, Doolittle WF.

J Mol Biol. 1991 Dec 5;222(3):509-24.

PMID:
1748993

Supplemental Content

Loading ...
Support Center