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Items: 31

1.

Author Correction: CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing's sarcoma.

Ross NT, Lohmann F, Carbonneau S, Fazal A, Weihofen WA, Gleim S, Salcius M, Sigoillot F, Henault M, Carl SH, Rodríguez-Molina JB, Miller HR, Brittain SM, Murphy J, Zambrowski M, Boynton G, Wang Y, Chen A, Molind GJ, Wilbertz JH, Artus-Revel CG, Jia M, Akinjiyan FA, Turner J, Knehr J, Carbone W, Schuierer S, Reece-Hoyes JS, Xie K, Saran C, Williams ET, Roma G, Spencer M, Jenkins J, George EL, Thomas JR, Michaud G, Schirle M, Tallarico J, Passmore LA, Chao JA, Beckwith REJ.

Nat Chem Biol. 2020 Apr;16(4):479. doi: 10.1038/s41589-020-0508-y.

PMID:
32139909
2.

CPSF3-dependent pre-mRNA processing as a druggable node in AML and Ewing's sarcoma.

Ross NT, Lohmann F, Carbonneau S, Fazal A, Weihofen WA, Gleim S, Salcius M, Sigoillot F, Henault M, Carl SH, Rodríguez-Molina JB, Miller HR, Brittain SM, Murphy J, Zambrowski M, Boynton G, Wang Y, Chen A, Molind GJ, Wilbertz JH, Artus-Revel CG, Jia M, Akinjiyan FA, Turner J, Knehr J, Carbone W, Schuierer S, Reece-Hoyes JS, Xie K, Saran C, Williams ET, Roma G, Spencer M, Jenkins J, George EL, Thomas JR, Michaud G, Schirle M, Tallarico J, Passmore LA, Chao JA, Beckwith REJ.

Nat Chem Biol. 2020 Jan;16(1):50-59. doi: 10.1038/s41589-019-0424-1. Epub 2019 Dec 9. Erratum in: Nat Chem Biol. 2020 Apr;16(4):479.

PMID:
31819276
3.

The structural basis for RNA selectivity by the IMP family of RNA-binding proteins.

Biswas J, Patel VL, Bhaskar V, Chao JA, Singer RH, Eliscovich C.

Nat Commun. 2019 Sep 30;10(1):4440. doi: 10.1038/s41467-019-12193-7.

4.

Quantification of mRNA Turnover in Living Cells: A Pipeline for TREAT Data Analysis.

Voigt F, Eglinger J, Chao JA.

Methods Mol Biol. 2019;2038:75-88. doi: 10.1007/978-1-4939-9674-2_6.

PMID:
31407279
5.

Detection and quantification of RNA decay intermediates using XRN1-resistant reporter transcripts.

Voigt F, Gerbracht JV, Boehm V, Horvathova I, Eglinger J, Chao JA, Gehring NH.

Nat Protoc. 2019 May;14(5):1603-1633. doi: 10.1038/s41596-019-0152-8. Epub 2019 Apr 24.

PMID:
31019309
6.

Single-Molecule Imaging of mRNA Localization and Regulation during the Integrated Stress Response.

Wilbertz JH, Voigt F, Horvathova I, Roth G, Zhan Y, Chao JA.

Mol Cell. 2019 Mar 7;73(5):946-958.e7. doi: 10.1016/j.molcel.2018.12.006. Epub 2019 Jan 17.

7.

Imaging the Life and Death of mRNAs in Single Cells.

Chao JA, Lionnet T.

Cold Spring Harb Perspect Biol. 2018 Dec 3;10(12). pii: a032086. doi: 10.1101/cshperspect.a032086. Review.

PMID:
30510061
8.

Caught in the Act? Quantifying Biochemistry Inside and Outside of Biomolecular Condensates.

Wilbertz JH, Chao JA.

Biochemistry. 2019 Jan 22;58(3):142-143. doi: 10.1021/acs.biochem.8b00905. Epub 2018 Sep 21. No abstract available.

PMID:
30240191
9.

Structural basis of IMP3 RRM12 recognition of RNA.

Jia M, Gut H, Chao JA.

RNA. 2018 Dec;24(12):1659-1666. doi: 10.1261/rna.065649.118. Epub 2018 Aug 22.

10.

Single-Molecule Quantification of Translation-Dependent Association of mRNAs with the Endoplasmic Reticulum.

Voigt F, Zhang H, Cui XA, Triebold D, Liu AX, Eglinger J, Lee ES, Chao JA, Palazzo AF.

Cell Rep. 2017 Dec 26;21(13):3740-3753. doi: 10.1016/j.celrep.2017.12.008.

11.

Detection of the First Round of Translation: The TRICK Assay.

Voigt F, Eglinger J, Chao JA.

Methods Mol Biol. 2018;1649:373-384. doi: 10.1007/978-1-4939-7213-5_25.

PMID:
29130211
12.

The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells.

Horvathova I, Voigt F, Kotrys AV, Zhan Y, Artus-Revel CG, Eglinger J, Stadler MB, Giorgetti L, Chao JA.

Mol Cell. 2017 Nov 2;68(3):615-625.e9. doi: 10.1016/j.molcel.2017.09.030. Epub 2017 Oct 19.

13.

Delayed pacemaker lead perforations: Why unusual presentations should prompt an early multidisciplinary team approach.

Chao JA, Firstenberg MS.

Int J Crit Illn Inj Sci. 2017 Jan-Mar;7(1):65-68. doi: 10.4103/2229-5151.201951.

14.

TRICK: A Single-Molecule Method for Imaging the First Round of Translation in Living Cells and Animals.

Halstead JM, Wilbertz JH, Wippich F, Lionnet T, Ephrussi A, Chao JA.

Methods Enzymol. 2016;572:123-57. doi: 10.1016/bs.mie.2016.02.027. Epub 2016 Apr 29.

PMID:
27241753
15.

Translation. An RNA biosensor for imaging the first round of translation from single cells to living animals.

Halstead JM, Lionnet T, Wilbertz JH, Wippich F, Ephrussi A, Singer RH, Chao JA.

Science. 2015 Mar 20;347(6228):1367-671. doi: 10.1126/science.aaa3380.

16.

Dynamic visualization of transcription and RNA subcellular localization in zebrafish.

Campbell PD, Chao JA, Singer RH, Marlow FL.

Development. 2015 Apr 1;142(7):1368-74. doi: 10.1242/dev.118968. Epub 2015 Mar 10.

17.

Single-molecule analysis of gene expression using two-color RNA labeling in live yeast.

Hocine S, Raymond P, Zenklusen D, Chao JA, Singer RH.

Nat Methods. 2013 Feb;10(2):119-21. doi: 10.1038/nmeth.2305. Epub 2012 Dec 23.

18.

Imaging translation in single cells using fluorescent microscopy.

Chao JA, Yoon YJ, Singer RH.

Cold Spring Harb Perspect Biol. 2012 Nov 1;4(11). pii: a012310. doi: 10.1101/cshperspect.a012310. Review.

19.

An unbiased analysis method to quantify mRNA localization reveals its correlation with cell motility.

Park HY, Trcek T, Wells AL, Chao JA, Singer RH.

Cell Rep. 2012 Feb 23;1(2):179-84. doi: 10.1016/j.celrep.2011.12.009. Epub 2012 Feb 16.

20.

Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells.

Wu B, Chao JA, Singer RH.

Biophys J. 2012 Jun 20;102(12):2936-44. doi: 10.1016/j.bpj.2012.05.017. Epub 2012 Jun 19.

21.

Single-mRNA counting using fluorescent in situ hybridization in budding yeast.

Trcek T, Chao JA, Larson DR, Park HY, Zenklusen D, Shenoy SM, Singer RH.

Nat Protoc. 2012 Feb 2;7(2):408-19. doi: 10.1038/nprot.2011.451.

22.

Spatial arrangement of an RNA zipcode identifies mRNAs under post-transcriptional control.

Patel VL, Mitra S, Harris R, Buxbaum AR, Lionnet T, Brenowitz M, Girvin M, Levy M, Almo SC, Singer RH, Chao JA.

Genes Dev. 2012 Jan 1;26(1):43-53. doi: 10.1101/gad.177428.111.

23.

Real-time observation of transcription initiation and elongation on an endogenous yeast gene.

Larson DR, Zenklusen D, Wu B, Chao JA, Singer RH.

Science. 2011 Apr 22;332(6028):475-8. doi: 10.1126/science.1202142.

24.

A transgenic mouse for in vivo detection of endogenous labeled mRNA.

Lionnet T, Czaplinski K, Darzacq X, Shav-Tal Y, Wells AL, Chao JA, Park HY, de Turris V, Lopez-Jones M, Singer RH.

Nat Methods. 2011 Feb;8(2):165-70. doi: 10.1038/nmeth.1551. Epub 2011 Jan 16.

25.

ZBP1 recognition of beta-actin zipcode induces RNA looping.

Chao JA, Patskovsky Y, Patel V, Levy M, Almo SC, Singer RH.

Genes Dev. 2010 Jan 15;24(2):148-58. doi: 10.1101/gad.1862910.

26.

Structural basis for the coevolution of a viral RNA-protein complex.

Chao JA, Patskovsky Y, Almo SC, Singer RH.

Nat Struct Mol Biol. 2008 Jan;15(1):103-5. Epub 2007 Dec 9.

27.

Dual modes of RNA-silencing suppression by Flock House virus protein B2.

Chao JA, Lee JH, Chapados BR, Debler EW, Schneemann A, Williamson JR.

Nat Struct Mol Biol. 2005 Nov;12(11):952-7.

PMID:
16228003
28.

Joint X-ray and NMR refinement of the yeast L30e-mRNA complex.

Chao JA, Williamson JR.

Structure. 2004 Jul;12(7):1165-76.

29.

Combinatorial crystallization of an RNA-protein complex.

Hoggan DB, Chao JA, Prasad GS, Stout CD, Williamson JR.

Acta Crystallogr D Biol Crystallogr. 2003 Mar;59(Pt 3):466-73. Epub 2003 Feb 21.

PMID:
12595703
30.

Inherent protein structural flexibility at the RNA-binding interface of L30e.

Chao JA, Prasad GS, White SA, Stout CD, Williamson JR.

J Mol Biol. 2003 Feb 28;326(4):999-1004.

PMID:
12589748
31.

Ring-closing metathesis of olefinic peptides: design, synthesis, and structural characterization of macrocyclic helical peptides.

Blackwell HE, Sadowsky JD, Howard RJ, Sampson JN, Chao JA, Steinmetz WE, O'Leary DJ, Grubbs RH.

J Org Chem. 2001 Aug 10;66(16):5291-302.

PMID:
11485448

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