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Protein methylation and translation: Role of lysine modification on the function of yeast elongation factor 1A.

White JT, Cato T, Deramchi N, Gabunilas J, Roy K, Wang C, Chanfreau GF, Clarke SG.

Biochemistry. 2019 Nov 18. doi: 10.1021/acs.biochem.9b00818. [Epub ahead of print]


Robust mapping of polyadenylated and non-polyadenylated RNA 3' ends at nucleotide resolution by 3'-end sequencing.

Roy KR, Chanfreau GF.

Methods. 2019 May 23. pii: S1046-2023(18)30376-1. doi: 10.1016/j.ymeth.2019.05.016. [Epub ahead of print]


A global function for transcription factors in assisting RNA polymerase II termination.

Roy K, Chanfreau GF.

Transcription. 2018;9(1):41-46. doi: 10.1080/21541264.2017.1300121. Epub 2017 Nov 6. Review.



Chanfreau GF.

Enzymes. 2017;41:xi. doi: 10.1016/S1874-6047(17)30017-3. No abstract available.


Impact of RNA Modifications and RNA-Modifying Enzymes on Eukaryotic Ribonucleases.

Chanfreau GF.

Enzymes. 2017;41:299-329. doi: 10.1016/bs.enz.2017.03.008. Epub 2017 May 5. Review.


Mutations of EXOSC3/Rrp40p associated with neurological diseases impact ribosomal RNA processing functions of the exosome in S. cerevisiae.

Gillespie A, Gabunilas J, Jen JC, Chanfreau GF.

RNA. 2017 Apr;23(4):466-472. doi: 10.1261/rna.060004.116. Epub 2017 Jan 4.


Common genomic elements promote transcriptional and DNA replication roadblocks.

Roy K, Gabunilas J, Gillespie A, Ngo D, Chanfreau GF.

Genome Res. 2016 Oct;26(10):1363-1375. Epub 2016 Aug 18.


Splicing-Mediated Autoregulation Modulates Rpl22p Expression in Saccharomyces cerevisiae.

Gabunilas J, Chanfreau G.

PLoS Genet. 2016 Apr 20;12(4):e1005999. doi: 10.1371/journal.pgen.1005999. eCollection 2016 Apr.


The Rtr1p CTD phosphatase autoregulates its mRNA through a degradation pathway involving the REX exonucleases.

Hodko D, Ward T, Chanfreau G.

RNA. 2016 Apr;22(4):559-70. doi: 10.1261/rna.055723.115. Epub 2016 Feb 3.


Methylation of yeast ribosomal protein Rpl3 promotes translational elongation fidelity.

Al-Hadid Q, Roy K, Chanfreau G, Clarke SG.

RNA. 2016 Apr;22(4):489-98. doi: 10.1261/rna.054569.115. Epub 2016 Jan 29.


Cu Nanoparticles Have Different Impacts in Escherichia coli and Lactobacillus brevis than Their Microsized and Ionic Analogues.

Kaweeteerawat C, Chang CH, Roy KR, Liu R, Li R, Toso D, Fischer H, Ivask A, Ji Z, Zink JI, Zhou ZH, Chanfreau GF, Telesca D, Cohen Y, Holden PA, Nel AE, Godwin HA.

ACS Nano. 2015 Jul 28;9(7):7215-25. doi: 10.1021/acsnano.5b02021. Epub 2015 Jul 13.


Two degrading decades for RNA.

Chanfreau G.

RNA. 2015 Apr;21(4):584-5. doi: 10.1261/rna.050146.115. No abstract available.


Stress-induced nuclear RNA degradation pathways regulate yeast bromodomain factor 2 to promote cell survival.

Roy K, Chanfreau G.

PLoS Genet. 2014 Sep 18;10(9):e1004661. doi: 10.1371/journal.pgen.1004661. eCollection 2014 Sep.


Translational roles of elongation factor 2 protein lysine methylation.

Dzialo MC, Travaglini KJ, Shen S, Roy K, Chanfreau GF, Loo JA, Clarke SG.

J Biol Chem. 2014 Oct 31;289(44):30511-24. doi: 10.1074/jbc.M114.605527. Epub 2014 Sep 17.


Histidine methylation of yeast ribosomal protein Rpl3p is required for proper 60S subunit assembly.

Al-Hadid Q, Roy K, Munroe W, Dzialo MC, Chanfreau GF, Clarke SG.

Mol Cell Biol. 2014 Aug;34(15):2903-16. doi: 10.1128/MCB.01634-13. Epub 2014 May 27.


Widespread use of non-productive alternative splice sites in Saccharomyces cerevisiae.

Kawashima T, Douglass S, Gabunilas J, Pellegrini M, Chanfreau GF.

PLoS Genet. 2014 Apr 10;10(4):e1004249. doi: 10.1371/journal.pgen.1004249. eCollection 2014 Apr.


Zinc’ing down RNA polymerase I.

Chanfreau GF.

Transcription. 2013 Sep-Dec;4(5):217-20. No abstract available.


RNA polymerase I stability couples cellular growth to metal availability.

Lee YJ, Lee CY, Grzechnik A, Gonzales-Zubiate F, Vashisht AA, Lee A, Wohlschlegel J, Chanfreau GF.

Mol Cell. 2013 Jul 11;51(1):105-15. doi: 10.1016/j.molcel.2013.05.005. Epub 2013 Jun 6.


Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites.

Hartman E, Wang Z, Zhang Q, Roy K, Chanfreau G, Feigon J.

J Mol Biol. 2013 Feb 8;425(3):546-62. doi: 10.1016/j.jmb.2012.11.025. Epub 2012 Nov 28.


Sphingolipid signaling mediates iron toxicity.

Lee YJ, Huang X, Kropat J, Henras A, Merchant SS, Dickson RC, Chanfreau GF.

Cell Metab. 2012 Jul 3;16(1):90-6. doi: 10.1016/j.cmet.2012.06.004.



Chanfreau G, Tamanoi F.

Enzymes. 2012;31:x-xii. doi: 10.1016/B978-0-12-404740-2.09991-2. Epub 2012 Sep 29. No abstract available.


The Diverse Functions of Fungal RNase III Enzymes in RNA Metabolism.

Roy K, Chanfreau GF.

Enzymes. 2012;31:213-35. doi: 10.1016/B978-0-12-404740-2.00010-0. Epub 2012 Sep 29.


Quality control of MATa1 splicing and exon skipping by nuclear RNA degradation.

Egecioglu DE, Kawashima TR, Chanfreau GF.

Nucleic Acids Res. 2012 Feb;40(4):1787-96. doi: 10.1093/nar/gkr864. Epub 2011 Oct 22.


Structure of a yeast RNase III dsRBD complex with a noncanonical RNA substrate provides new insights into binding specificity of dsRBDs.

Wang Z, Hartman E, Roy K, Chanfreau G, Feigon J.

Structure. 2011 Jul 13;19(7):999-1010. doi: 10.1016/j.str.2011.03.022.


Cryptic transcription mediates repression of subtelomeric metal homeostasis genes.

Toesca I, Nery CR, Fernandez CF, Sayani S, Chanfreau GF.

PLoS Genet. 2011 Jun;7(6):e1002163. doi: 10.1371/journal.pgen.1002163. Epub 2011 Jun 30.


Structure of H/ACA RNP protein Nhp2p reveals cis/trans isomerization of a conserved proline at the RNA and Nop10 binding interface.

Koo BK, Park CJ, Fernandez CF, Chim N, Ding Y, Chanfreau G, Feigon J.

J Mol Biol. 2011 Sep 2;411(5):927-42. doi: 10.1016/j.jmb.2011.06.022. Epub 2011 Jun 25.


Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control.

Egecioglu DE, Chanfreau G.

RNA. 2011 Mar;17(3):383-9. doi: 10.1261/rna.2454711. Epub 2011 Jan 4. Review.


A dual role for RNA splicing signals.

Chanfreau GF.

EMBO Rep. 2010 Oct;11(10):720-1. doi: 10.1038/embor.2010.148. No abstract available.


InvIGOrating mRNAs during Quiescence.

Chanfreau G.

Mol Cell. 2010 May 14;38(3):317-8. doi: 10.1016/j.molcel.2010.04.020.


Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations.

Kawashima T, Pellegrini M, Chanfreau GF.

RNA. 2009 Dec;15(12):2236-47. doi: 10.1261/rna.1736809. Epub 2009 Oct 22.


Structure and functional studies of the CS domain of the essential H/ACA ribonucleoparticle assembly protein SHQ1.

Singh M, Gonzales FA, Cascio D, Heckmann N, Chanfreau G, Feigon J.

J Biol Chem. 2009 Jan 16;284(3):1906-16. doi: 10.1074/jbc.M807337200. Epub 2008 Nov 19.


Widespread impact of nonsense-mediated mRNA decay on the yeast intronome.

Sayani S, Janis M, Lee CY, Toesca I, Chanfreau GF.

Mol Cell. 2008 Aug 8;31(3):360-70. doi: 10.1016/j.molcel.2008.07.005.


The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Merchant SS, Prochnik SE, Vallon O, Harris EH, Karpowicz SJ, Witman GB, Terry A, Salamov A, Fritz-Laylin LK, Maréchal-Drouard L, Marshall WF, Qu LH, Nelson DR, Sanderfoot AA, Spalding MH, Kapitonov VV, Ren Q, Ferris P, Lindquist E, Shapiro H, Lucas SM, Grimwood J, Schmutz J, Cardol P, Cerutti H, Chanfreau G, Chen CL, Cognat V, Croft MT, Dent R, Dutcher S, Fernández E, Fukuzawa H, González-Ballester D, González-Halphen D, Hallmann A, Hanikenne M, Hippler M, Inwood W, Jabbari K, Kalanon M, Kuras R, Lefebvre PA, Lemaire SD, Lobanov AV, Lohr M, Manuell A, Meier I, Mets L, Mittag M, Mittelmeier T, Moroney JV, Moseley J, Napoli C, Nedelcu AM, Niyogi K, Novoselov SV, Paulsen IT, Pazour G, Purton S, Ral JP, Riaño-Pachón DM, Riekhof W, Rymarquis L, Schroda M, Stern D, Umen J, Willows R, Wilson N, Zimmer SL, Allmer J, Balk J, Bisova K, Chen CJ, Elias M, Gendler K, Hauser C, Lamb MR, Ledford H, Long JC, Minagawa J, Page MD, Pan J, Pootakham W, Roje S, Rose A, Stahlberg E, Terauchi AM, Yang P, Ball S, Bowler C, Dieckmann CL, Gladyshev VN, Green P, Jorgensen R, Mayfield S, Mueller-Roeber B, Rajamani S, Sayre RT, Brokstein P, Dubchak I, Goodstein D, Hornick L, Huang YW, Jhaveri J, Luo Y, Martínez D, Ngau WC, Otillar B, Poliakov A, Porter A, Szajkowski L, Werner G, Zhou K, Grigoriev IV, Rokhsar DS, Grossman AR.

Science. 2007 Oct 12;318(5848):245-50.


Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.

Oberstrass FC, Lee A, Stefl R, Janis M, Chanfreau G, Allain FH.

Nat Struct Mol Biol. 2006 Feb;13(2):160-7. Epub 2006 Jan 22.


CUTting genetic noise by polyadenylation-induced RNA degradation.

Chanfreau GF.

Trends Cell Biol. 2005 Dec;15(12):635-7. Epub 2005 Oct 21.


Biochemical and genomic analysis of substrate recognition by the double-stranded RNA binding domain of yeast RNase III.

Henras AK, Sam M, Hiley SL, Wu H, Hughes TR, Feigon J, Chanfreau GF.

RNA. 2005 Aug;11(8):1225-37. Epub 2005 Jun 29.


Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and of the RNA binding protein Naf1p during H/ACA snoRNP assembly.

Yang PK, Hoareau C, Froment C, Monsarrat B, Henry Y, Chanfreau G.

Mol Cell Biol. 2005 Apr;25(8):3295-304.


A conserved major groove antideterminant for Saccharomyces cerevisiae RNase III recognition.

Sam M, Henras AK, Chanfreau G.

Biochemistry. 2005 Mar 22;44(11):4181-7.


Hydroxyl radical is the active species in photochemical DNA strand scission by bis(peroxo)vanadium(V) phenanthroline.

Sam M, Hwang JH, Chanfreau G, Abu-Omar MM.

Inorg Chem. 2004 Dec 27;43(26):8447-55.


A cotranscriptional model for 3'-end processing of the Saccharomyces cerevisiae pre-ribosomal RNA precursor.

Henras AK, Bertrand E, Chanfreau G.

RNA. 2004 Oct;10(10):1572-85. Epub 2004 Aug 30.


Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.

Wu H, Henras A, Chanfreau G, Feigon J.

Proc Natl Acad Sci U S A. 2004 Jun 1;101(22):8307-12. Epub 2004 May 18.


RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns.

Danin-Kreiselman M, Lee CY, Chanfreau G.

Mol Cell. 2003 May;11(5):1279-89.


The Shq1p.Naf1p complex is required for box H/ACA small nucleolar ribonucleoprotein particle biogenesis.

Yang PK, Rotondo G, Porras T, Legrain P, Chanfreau G.

J Biol Chem. 2002 Nov 22;277(47):45235-42. Epub 2002 Sep 11.


A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III.

Wu H, Yang PK, Butcher SE, Kang S, Chanfreau G, Feigon J.

EMBO J. 2001 Dec 17;20(24):7240-9.

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