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Items: 1 to 50 of 87

1.

Sensor Sensibility-HIV-1 and the Innate Immune Response.

Yin X, Langer S, Zhang Z, Herbert KM, Yoh S, König R, Chanda SK.

Cells. 2020 Jan 20;9(1). pii: E254. doi: 10.3390/cells9010254. Review.

2.

Viral Determinants in H5N1 Influenza A Virus Enable Productive Infection of HeLa Cells.

Rodriguez-Frandsen A, Martin-Sancho L, Gounder AP, Chang MW, Liu WC, De Jesus PD, von Recum-Knepper J, Dutra MS, Huffmaster NJ, Chavarria M, Mena I, Riva L, Nguyen CB, Dobariya S, Herbert KM, Benner C, Albrecht RA, García-Sastre A, Chanda SK.

J Virol. 2020 Jan 31;94(4). pii: e01410-19. doi: 10.1128/JVI.01410-19. Print 2020 Jan 31.

PMID:
31776276
3.

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.

Zhou Y, Zhou B, Pache L, Chang M, Khodabakhshi AH, Tanaseichuk O, Benner C, Chanda SK.

Nat Commun. 2019 Apr 3;10(1):1523. doi: 10.1038/s41467-019-09234-6.

4.

HIV-1 Vpu is a potent transcriptional suppressor of NF-κB-elicited antiviral immune responses.

Langer S, Hammer C, Hopfensperger K, Klein L, Hotter D, De Jesus PD, Herbert KM, Pache L, Smith N, van der Merwe JA, Chanda SK, Fellay J, Kirchhoff F, Sauter D.

Elife. 2019 Feb 5;8. pii: e41930. doi: 10.7554/eLife.41930.

5.

HIV-1 Fusion with CD4+ T cells Is Promoted by Proteins Involved in Endocytosis and Intracellular Membrane Trafficking.

Marin M, Kushnareva Y, Mason CS, Chanda SK, Melikyan GB.

Viruses. 2019 Jan 25;11(2). pii: E100. doi: 10.3390/v11020100.

6.

SNW1, a Novel Transcriptional Regulator of the NF-κB Pathway.

Verma S, De Jesus P, Chanda SK, Verma IM.

Mol Cell Biol. 2019 Jan 16;39(3). pii: e00415-18. doi: 10.1128/MCB.00415-18. Print 2019 Feb 1.

7.

Large-Scale Arrayed Analysis of Protein Degradation Reveals Cellular Targets for HIV-1 Vpu.

Jain P, Boso G, Langer S, Soonthornvacharin S, De Jesus PD, Nguyen Q, Olivieri KC, Portillo AJ, Yoh SM, Pache L, Chanda SK.

Cell Rep. 2018 Feb 27;22(9):2493-2503. doi: 10.1016/j.celrep.2018.01.091.

8.

Broad Spectrum Inhibitor of Influenza A and B Viruses Targeting the Viral Nucleoprotein.

White KM, Abreu P Jr, Wang H, De Jesus PD, Manicassamy B, García-Sastre A, Chanda SK, DeVita RJ, Shaw ML.

ACS Infect Dis. 2018 Feb 9;4(2):146-157. doi: 10.1021/acsinfecdis.7b00120. Epub 2018 Jan 4.

9.

Identification of Polo-like kinases as potential novel drug targets for influenza A virus.

Pohl MO, von Recum-Knepper J, Rodriguez-Frandsen A, Lanz C, Yángüez E, Soonthornvacharin S, Wolff T, Chanda SK, Stertz S.

Sci Rep. 2017 Aug 17;7(1):8629. doi: 10.1038/s41598-017-08942-7.

10.

Systems-based analysis of RIG-I-dependent signalling identifies KHSRP as an inhibitor of RIG-I receptor activation.

Soonthornvacharin S, Rodriguez-Frandsen A, Zhou Y, Galvez F, Huffmaster NJ, Tripathi S, Balasubramaniam VR, Inoue A, de Castro E, Moulton H, Stein DA, Sánchez-Aparicio MT, De Jesus PD, Nguyen Q, König R, Krogan NJ, García-Sastre A, Yoh SM, Chanda SK.

Nat Microbiol. 2017 Mar 1;2:17022. doi: 10.1038/nmicrobiol.2017.22.

11.

A Herpesvirus Protein Selectively Inhibits Cellular mRNA Nuclear Export.

Gong D, Kim YH, Xiao Y, Du Y, Xie Y, Lee KK, Feng J, Farhat N, Zhao D, Shu S, Dai X, Chanda SK, Rana TM, Krogan NJ, Sun R, Wu TT.

Cell Host Microbe. 2016 Nov 9;20(5):642-653. doi: 10.1016/j.chom.2016.10.004.

12.

Chaetanaphothrips kiyosumianus (Thysanoptera, Thripidae) new to India with first record of the male.

Tyagi K, Kumar V, Bhuyan M, Shandilya S, Chanda SK.

Zootaxa. 2016 Aug 8;4147(5):593-6. doi: 10.11646/zootaxa.4147.5.8.

PMID:
27515639
13.

NLRX1 Sequesters STING to Negatively Regulate the Interferon Response, Thereby Facilitating the Replication of HIV-1 and DNA Viruses.

Guo H, König R, Deng M, Riess M, Mo J, Zhang L, Petrucelli A, Yoh SM, Barefoot B, Samo M, Sempowski GD, Zhang A, Colberg-Poley AM, Feng H, Lemon SM, Liu Y, Zhang Y, Wen H, Zhang Z, Damania B, Tsao LC, Wang Q, Su L, Duncan JA, Chanda SK, Ting JP.

Cell Host Microbe. 2016 Apr 13;19(4):515-528. doi: 10.1016/j.chom.2016.03.001.

14.

MxB Is Not Responsible for the Blocking of HIV-1 Infection Observed in Alpha Interferon-Treated Cells.

Opp S, Vieira DA, Schulte B, Chanda SK, Diaz-Griffero F.

J Virol. 2015 Dec 30;90(6):3056-64. doi: 10.1128/JVI.03146-15.

15.

Meta- and Orthogonal Integration of Influenza "OMICs" Data Defines a Role for UBR4 in Virus Budding.

Tripathi S, Pohl MO, Zhou Y, Rodriguez-Frandsen A, Wang G, Stein DA, Moulton HM, DeJesus P, Che J, Mulder LC, Yángüez E, Andenmatten D, Pache L, Manicassamy B, Albrecht RA, Gonzalez MG, Nguyen Q, Brass A, Elledge S, White M, Shapira S, Hacohen N, Karlas A, Meyer TF, Shales M, Gatorano A, Johnson JR, Jang G, Johnson T, Verschueren E, Sanders D, Krogan N, Shaw M, König R, Stertz S, García-Sastre A, Chanda SK.

Cell Host Microbe. 2015 Dec 9;18(6):723-35. doi: 10.1016/j.chom.2015.11.002.

16.

BIRC2/cIAP1 Is a Negative Regulator of HIV-1 Transcription and Can Be Targeted by Smac Mimetics to Promote Reversal of Viral Latency.

Pache L, Dutra MS, Spivak AM, Marlett JM, Murry JP, Hwang Y, Maestre AM, Manganaro L, Vamos M, Teriete P, Martins LJ, König R, Simon V, Bosque A, Fernandez-Sesma A, Cosford ND, Bushman FD, Young JA, Planelles V, Chanda SK.

Cell Host Microbe. 2015 Sep 9;18(3):345-53. doi: 10.1016/j.chom.2015.08.009.

17.

HIV-1 protease cleaves the serine-threonine kinases RIPK1 and RIPK2.

Wagner RN, Reed JC, Chanda SK.

Retrovirology. 2015 Aug 22;12:74. doi: 10.1186/s12977-015-0200-6.

18.

PQBP1 Is a Proximal Sensor of the cGAS-Dependent Innate Response to HIV-1.

Yoh SM, Schneider M, Seifried J, Soonthornvacharin S, Akleh RE, Olivieri KC, De Jesus PD, Ruan C, de Castro E, Ruiz PA, Germanaud D, des Portes V, García-Sastre A, König R, Chanda SK.

Cell. 2015 Jun 4;161(6):1293-1305. doi: 10.1016/j.cell.2015.04.050.

19.

A Potent Anti-influenza Compound Blocks Fusion through Stabilization of the Prefusion Conformation of the Hemagglutinin Protein.

White KM, De Jesus P, Chen Z, Abreu P Jr, Barile E, Mak PA, Anderson P, Nguyen QT, Inoue A, Stertz S, Koenig R, Pellecchia M, Palese P, Kuhen K, García-Sastre A, Chanda SK, Shaw ML.

ACS Infect Dis. 2015 Feb 13;1(2):98-109. Epub 2014 Dec 15.

20.

PA5 Elderly population in bangladesh: coping with society in transition.

Chanda SK, Wara K, Das SN.

BMJ Support Palliat Care. 2015 Apr;5 Suppl 1:A21. doi: 10.1136/bmjspcare-2015-000906.65.

PMID:
25960491
21.

Transcriptional repression of IFNβ1 by ATF2 confers melanoma resistance to therapy.

Lau E, Sedy J, Sander C, Shaw MA, Feng Y, Scortegagna M, Claps G, Robinson S, Cheng P, Srivas R, Soonthornvacharin S, Ideker T, Bosenberg M, Gonzalez R, Robinson W, Chanda SK, Ware C, Dummer R, Hoon D, Kirkwood JM, Ronai ZA.

Oncogene. 2015 Nov 12;34(46):5739-48. doi: 10.1038/onc.2015.22. Epub 2015 Mar 2.

22.

Histochemical evaluation of catechins in PEG stressed transgenic tea plants using catechin-specific-diazotized sulfanilamide reagent.

Bhattacharya A, Sharma M, Gulati A, Joshi R, Chanda SK, Ahuja PS.

Biotech Histochem. 2015 Jan;90(1):45-54. doi: 10.3109/10520295.2014.942369. Epub 2014 Aug 25.

PMID:
25151989
23.

An integrated map of HIV-human protein complexes that facilitate viral infection.

Emig-Agius D, Olivieri K, Pache L, Shih HL, Pustovalova O, Bessarabova M, Young JA, Chanda SK, Ideker T.

PLoS One. 2014 May 9;9(5):e96687. doi: 10.1371/journal.pone.0096687. eCollection 2014.

24.

RIOK3 is an adaptor protein required for IRF3-mediated antiviral type I interferon production.

Feng J, De Jesus PD, Su V, Han S, Gong D, Wu NC, Tian Y, Li X, Wu TT, Chanda SK, Sun R.

J Virol. 2014 Jul;88(14):7987-97. doi: 10.1128/JVI.00643-14. Epub 2014 May 7.

25.

Tumor suppressor cylindromatosis (CYLD) controls HIV transcription in an NF-κB-dependent manner.

Manganaro L, Pache L, Herrmann T, Marlett J, Hwang Y, Murry J, Miorin L, Ting AT, König R, García-Sastre A, Bushman FD, Chanda SK, Young JA, Fernandez-Sesma A, Simon V.

J Virol. 2014 Jul;88(13):7528-40. doi: 10.1128/JVI.00239-14. Epub 2014 Apr 23.

26.

Positive regulation of TRAF6-dependent innate immune responses by protein phosphatase PP1-γ.

Opaluch AM, Schneider M, Chiang CY, Nguyen QT, Maestre AM, Mulder LC, Secundino I, De Jesus PD, König R, Simon V, Nizet V, MacLeod G, Varmuza S, Fernandez-Sesma A, Chanda SK.

PLoS One. 2014 Feb 20;9(2):e89284. doi: 10.1371/journal.pone.0089284. eCollection 2014.

27.

Equity in reproductive and maternal health services in Bangladesh.

Zere E, Suehiro Y, Arifeen A, Moonesinghe L, Chanda SK, Kirigia JM.

Int J Equity Health. 2013 Nov 14;12:90. doi: 10.1186/1475-9276-12-90.

28.

A short hairpin RNA screen of interferon-stimulated genes identifies a novel negative regulator of the cellular antiviral response.

Li J, Ding SC, Cho H, Chung BC, Gale M Jr, Chanda SK, Diamond MS.

mBio. 2013 Jun 18;4(3):e00385-13. doi: 10.1128/mBio.00385-13.

29.

Identification of small molecules that interfere with H1N1 influenza A viral replication.

Bottini A, De SK, Baaten BJ, Wu B, Barile E, Soonthornvacharin S, Stebbins JL, Bradley LM, Chanda SK, Pellecchia M.

ChemMedChem. 2012 Dec;7(12):2227-35. doi: 10.1002/cmdc.201200453. Epub 2012 Nov 8.

30.

Metabolic syndrome is a risk factor for development of heart failure in acute myocardial infarction.

Bari MA, Islam MS, Paul GK, Chanda SK, Siddique SR, Khan TA.

Mymensingh Med J. 2012 Oct;21(4):633-8.

PMID:
23134910
31.

Functional genomic and high-content screening for target discovery and deconvolution.

Heynen-Genel S, Pache L, Chanda SK, Rosen J.

Expert Opin Drug Discov. 2012 Oct;7(10):955-68. Epub 2012 Aug 4. Review.

32.

Long-term survival in an un-operated single ventricle.

Paul GK, Bari MS, Bari MA, Debnath RC, Majumder RK, Chanda SK, Siddique SR, Khan TA, Khan MK, Hossain M, Islam MM.

Mymensingh Med J. 2012 Jul;21(3):543-6.

PMID:
22828558
33.

Cofactors required for TLR7- and TLR9-dependent innate immune responses.

Chiang CY, Engel A, Opaluch AM, Ramos I, Maestre AM, Secundino I, De Jesus PD, Nguyen QT, Welch G, Bonamy GM, Miraglia LJ, Orth AP, Nizet V, Fernandez-Sesma A, Zhou Y, Barton GM, Chanda SK.

Cell Host Microbe. 2012 Mar 15;11(3):306-18. doi: 10.1016/j.chom.2012.02.002.

34.

Fer kinase regulates cell migration through α-dystroglycan glycosylation.

Yoneyama T, Angata K, Bao X, Courtneidge S, Chanda SK, Fukuda M.

Mol Biol Cell. 2012 Mar;23(5):771-80. doi: 10.1091/mbc.E11-06-0517. Epub 2012 Jan 11.

35.

Global landscape of HIV-human protein complexes.

Jäger S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, Stephens M, D'Orso I, Fernandes J, Fahey M, Mahon C, O'Donoghue AJ, Todorovic A, Morris JH, Maltby DA, Alber T, Cagney G, Bushman FD, Young JA, Chanda SK, Sundquist WI, Kortemme T, Hernandez RD, Craik CS, Burlingame A, Sali A, Frankel AD, Krogan NJ.

Nature. 2011 Dec 21;481(7381):365-70. doi: 10.1038/nature10719.

36.

Disseminated tuberculosis presenting as acute coronary syndrome.

Paul GK, Bari MS, Bari MA, Debnath RC, Majumder RK, Chanda SK, Siddique SR, Khan TA, Khan MK.

Mymensingh Med J. 2011 Oct;20(4):709-11.

PMID:
22081193
37.

Tumor suppressor protein (p)53, is a regulator of NF-kappaB repression by the glucocorticoid receptor.

Murphy SH, Suzuki K, Downes M, Welch GL, De Jesus P, Miraglia LJ, Orth AP, Chanda SK, Evans RM, Verma IM.

Proc Natl Acad Sci U S A. 2011 Oct 11;108(41):17117-22. doi: 10.1073/pnas.1114420108. Epub 2011 Sep 26.

38.

GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.

Fahey ME, Bennett MJ, Mahon C, Jäger S, Pache L, Kumar D, Shapiro A, Rao K, Chanda SK, Craik CS, Frankel AD, Krogan NJ.

BMC Bioinformatics. 2011 Jul 22;12:298. doi: 10.1186/1471-2105-12-298.

39.

In silico gene prioritization by integrating multiple data sources.

Chen Y, Wang W, Zhou Y, Shields R, Chanda SK, Elston RC, Li J.

PLoS One. 2011;6(6):e21137. doi: 10.1371/journal.pone.0021137. Epub 2011 Jun 24.

40.

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.

Ocwieja KE, Brady TL, Ronen K, Huegel A, Roth SL, Schaller T, James LC, Towers GJ, Young JA, Chanda SK, König R, Malani N, Berry CC, Bushman FD.

PLoS Pathog. 2011 Mar;7(3):e1001313. doi: 10.1371/journal.ppat.1001313. Epub 2011 Mar 10.

41.

A case report of right ventricular mass.

Paul GK, Sen B, Bari MA, Hossain MA, Bari MS, Chanda SK, Siddique SR, Azam MG, Khan TA.

Mymensingh Med J. 2010 Oct;19(4):614-7.

PMID:
20956908
42.

A human MAP kinase interactome.

Bandyopadhyay S, Chiang CY, Srivastava J, Gersten M, White S, Bell R, Kurschner C, Martin C, Smoot M, Sahasrabudhe S, Barber DL, Chanda SK, Ideker T.

Nat Methods. 2010 Oct;7(10):801-5.

43.

Identifying HIV-1 host cell factors by genome-scale RNAi screening.

Pache L, König R, Chanda SK.

Methods. 2011 Jan;53(1):3-12. doi: 10.1016/j.ymeth.2010.07.009. Epub 2010 Jul 21. Review.

PMID:
20654720
44.

Telomere-independent Rap1 is an IKK adaptor and regulates NF-kappaB-dependent gene expression.

Teo H, Ghosh S, Luesch H, Ghosh A, Wong ET, Malik N, Orth A, de Jesus P, Perry AS, Oliver JD, Tran NL, Speiser LJ, Wong M, Saez E, Schultz P, Chanda SK, Verma IM, Tergaonkar V.

Nat Cell Biol. 2010 Aug;12(8):758-67. doi: 10.1038/ncb2080. Epub 2010 Jul 11.

PMID:
20622870
45.

Gene expression and transcription factor profiling reveal inhibition of transcription factor cAMP-response element-binding protein by gamma-herpesvirus replication and transcription activator.

Brown HJ, Peng L, Harada JN, Walker JR, Cole S, Lin SF, Zack JA, Chanda SK, Sun R.

J Biol Chem. 2010 Aug 13;285(33):25139-53. doi: 10.1074/jbc.M110.137737. Epub 2010 Jun 1.

46.

Determining the distribution of probes between different subcellular locations through automated unmixing of subcellular patterns.

Peng T, Bonamy GM, Glory-Afshar E, Rines DR, Chanda SK, Murphy RF.

Proc Natl Acad Sci U S A. 2010 Feb 16;107(7):2944-9. doi: 10.1073/pnas.0912090107. Epub 2010 Feb 1.

47.

Human host factors required for influenza virus replication.

König R, Stertz S, Zhou Y, Inoue A, Hoffmann HH, Bhattacharyya S, Alamares JG, Tscherne DM, Ortigoza MB, Liang Y, Gao Q, Andrews SE, Bandyopadhyay S, De Jesus P, Tu BP, Pache L, Shih C, Orth A, Bonamy G, Miraglia L, Ideker T, García-Sastre A, Young JA, Palese P, Shaw ML, Chanda SK.

Nature. 2010 Feb 11;463(7282):813-7. doi: 10.1038/nature08699.

48.

Host cell factors in HIV replication: meta-analysis of genome-wide studies.

Bushman FD, Malani N, Fernandes J, D'Orso I, Cagney G, Diamond TL, Zhou H, Hazuda DJ, Espeseth AS, König R, Bandyopadhyay S, Ideker T, Goff SP, Krogan NJ, Frankel AD, Young JA, Chanda SK.

PLoS Pathog. 2009 May;5(5):e1000437. doi: 10.1371/journal.ppat.1000437. Epub 2009 May 29. Review.

49.

A functional screen for regulators of CKDN2A reveals MEOX2 as a transcriptional activator of INK4a.

Irelan JT, Gutierrez Del Arroyo A, Gutierrez A, Peters G, Quon KC, Miraglia L, Chanda SK.

PLoS One. 2009;4(4):e5067. doi: 10.1371/journal.pone.0005067. Epub 2009 Apr 2.

50.

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication.

König R, Zhou Y, Elleder D, Diamond TL, Bonamy GM, Irelan JT, Chiang CY, Tu BP, De Jesus PD, Lilley CE, Seidel S, Opaluch AM, Caldwell JS, Weitzman MD, Kuhen KL, Bandyopadhyay S, Ideker T, Orth AP, Miraglia LJ, Bushman FD, Young JA, Chanda SK.

Cell. 2008 Oct 3;135(1):49-60. doi: 10.1016/j.cell.2008.07.032.

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