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Items: 1 to 50 of 73

1.

Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25.

2.

Biologic Adjuvants for the Management of Osteochondral Lesions of the Talus.

Hogan MV, Hicks JJ, Chambers MC, Kennedy JG.

J Am Acad Orthop Surg. 2019 Feb 1;27(3):e105-e111. doi: 10.5435/JAAOS-D-16-00840.

PMID:
30431502
3.

Bone Bruise Patterns in Skeletally Immature Patients With Anterior Cruciate Ligament Injury: Shock-Absorbing Function of the Physis.

Novaretti JV, Shin JJ, Albers M, Chambers MC, Cohen M, Musahl V, Fu FH.

Am J Sports Med. 2018 Jul;46(9):2128-2132. doi: 10.1177/0363546518777247. Epub 2018 Jun 8.

PMID:
29883199
4.

Editorial Commentary: Adult Stem Cell Potential to Enhance Healing of the Anterior Cruciate Ligament.

Chambers MC, Fu FH.

Arthroscopy. 2018 Jan;34(1):341-342. doi: 10.1016/j.arthro.2017.08.264.

PMID:
29304972
5.

Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity.

Wang X, Codreanu SG, Wen B, Li K, Chambers MC, Liebler DC, Zhang B.

Mol Cell Proteomics. 2018 Mar;17(3):422-430. doi: 10.1074/mcp.RA117.000155. Epub 2017 Dec 8.

6.

An Accessible Proteogenomics Informatics Resource for Cancer Researchers.

Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, GrĂ¼ning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ.

Cancer Res. 2017 Nov 1;77(21):e43-e46. doi: 10.1158/0008-5472.CAN-17-0331.

7.

Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.

Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, Shi Z, Ban Y, Chen X, Coffey RJC, Slebos RJC, Burgess AW, Liebler DC, Zhang B, Sieber OM.

Gastroenterology. 2017 Oct;153(4):1082-1095. doi: 10.1053/j.gastro.2017.06.008. Epub 2017 Jun 16.

8.

Two-Stage Revision Total Knee Arthroplasty in the Setting of Periprosthetic Knee Infection.

Sayeed Z, Anoushiravani AA, El-Othmani MM, Chambers MC, Mihalko WM, Jiranek WA, Paprosky WG, Saleh KJ.

Instr Course Lect. 2017 Feb 15;66:249-262.

PMID:
28594503
9.

Single-Stage Revision Total Knee Arthroplasty in the Setting of Periprosthetic Knee Infection: Indications, Contraindications, and Postoperative Outcomes.

Anoushiravani AA, Sayeed Z, El-Othmani MM, Chambers MC, Mihalko WM, Jiranek WA, Paprosky WG, Saleh KJ.

Instr Course Lect. 2017 Feb 15;66:235-247.

PMID:
28594502
10.

Pipeline program recruits and retains women and underrepresented minorities in procedure based specialties: A brief report.

Mason BS, Ross W, Chambers MC, Grant R, Parks M.

Am J Surg. 2017 Apr;213(4):662-665. doi: 10.1016/j.amjsurg.2016.11.022. Epub 2016 Nov 17.

PMID:
28302274
11.

Effect of Time of Operation on Hip Fracture Outcomes: A Retrospective Analysis.

Barinaga G, Wright E, Cagle PJ Jr, Anoushiravani AA, Sayeed Z, Chambers MC, El-Othmani MM, Saleh KJ.

J Am Acad Orthop Surg. 2017 Jan;25(1):55-60. doi: 10.5435/JAAOS-D-15-00494.

PMID:
27902537
12.

Affordable Care Organizations and Bundled Pricing: A New Philosophy of Care.

Barinaga G, Chambers MC, El-Othmani MM, Siegrist RB, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):707-16. doi: 10.1016/j.ocl.2016.05.013. Epub 2016 Aug 10. Review.

PMID:
27637657
13.

Patient Centeredness in Total Joint Replacement: Beyond the Slogan.

Zeineddine HA, El-Othmani MM, Sayeed Z, Chambers MC, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):697-706. doi: 10.1016/j.ocl.2016.05.012. Epub 2016 Aug 9. Review.

PMID:
27637656
14.

Planning, Building, and Maintaining a Successful Musculoskeletal Service Line.

Sayeed Z, El-Othmani MM, Anoushiravani AA, Chambers MC, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):681-8. doi: 10.1016/j.ocl.2016.05.010. Epub 2016 Aug 9. Review.

PMID:
27637654
15.

Reducing 30-day Readmission After Joint Replacement.

Chambers MC, El-Othmani MM, Anoushiravani AA, Sayeed Z, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):673-80. doi: 10.1016/j.ocl.2016.05.014. Epub 2016 Aug 9. Review.

PMID:
27637653
16.

Approach to Decrease Infection Following Total Joint Arthroplasty.

Hatz D, Anoushiravani AA, Chambers MC, El-Othmani MM, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):661-71. doi: 10.1016/j.ocl.2016.05.007. Epub 2016 Aug 6. Review.

PMID:
27637652
17.

Reducing Length of Stay in Total Joint Arthroplasty Care.

Walters M, Chambers MC, Sayeed Z, Anoushiravani AA, El-Othmani MM, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):653-60. doi: 10.1016/j.ocl.2016.05.006. Epub 2016 Aug 6. Review.

PMID:
27637651
18.

Health Care Reform: Impact on Total Joint Replacement.

Chambers MC, El-Othmani MM, Saleh KJ.

Orthop Clin North Am. 2016 Oct;47(4):645-52. doi: 10.1016/j.ocl.2016.05.005. Epub 2016 Aug 6. Review.

PMID:
27637650
19.

Osteolysis Complicating Total Knee Arthroplasty.

Gilbert TJ, Anoushiravani AA, Sayeed Z, Chambers MC, El-Othmani MM, Saleh KJ.

JBJS Rev. 2016 Jul 5;4(7). pii: 01874474-201607000-00001. doi: 10.2106/JBJS.RVW.15.00081.

PMID:
27509327
20.

Economics of All-Polyethylene Versus Metal-Backed Tibial Prosthesis Designs.

Chambers MC, El-Othmani MM, Sayeed Z, Anoushiravani A, Schnur AK, Mihalko WM, Saleh KJ.

Orthopedics. 2016 May;39(3 Suppl):S61-6. doi: 10.3928/01477447-20160509-18. Review.

PMID:
27219732
21.

Postoperative Radiographic Assessment of the Vega Posterior-Stabilized TKA.

Beason AM, Zhang H, Anoushiravani AA, Sayeed Z, Chambers MC, El-Othmani MM, Mihalko WM, Saleh KJ.

Orthopedics. 2016 May;39(3 Suppl):S56-60. doi: 10.3928/01477447-20160509-19.

PMID:
27219730
22.

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification.

Kochen MA, Chambers MC, Holman JD, Nesvizhskii AI, Weintraub ST, Belisle JT, Islam MN, Griss J, Tabb DL.

Anal Chem. 2016 Jun 7;88(11):5733-41. doi: 10.1021/acs.analchem.6b00021. Epub 2016 May 24.

23.

Assessing In-Hospital Outcomes and Resource Utilization After Primary Total Joint Arthroplasty Among Underweight Patients.

Anoushiravani AA, Sayeed Z, Chambers MC, Gilbert TJ, Scaife SL, El-Othmani MM, Saleh KJ.

J Arthroplasty. 2016 Jul;31(7):1407-12. doi: 10.1016/j.arth.2015.12.053. Epub 2016 Feb 27.

PMID:
27133161
24.

Can a Strategic Pipeline Initiative Increase the Number of Women and Underrepresented Minorities in Orthopaedic Surgery?

Mason BS, Ross W, Ortega G, Chambers MC, Parks ML.

Clin Orthop Relat Res. 2016 Sep;474(9):1979-85. doi: 10.1007/s11999-016-4846-8.

25.

Comparing In-Hospital Total Joint Arthroplasty Outcomes and Resource Consumption Among Underweight and Morbidly Obese Patients.

Sayeed Z, Anoushiravani AA, Chambers MC, Gilbert TJ, Scaife SL, El-Othmani MM, Saleh KJ.

J Arthroplasty. 2016 Oct;31(10):2085-90. doi: 10.1016/j.arth.2016.03.015. Epub 2016 Mar 15.

PMID:
27080111
26.

Acrylic bone cement in total joint arthroplasty: A review.

Saleh KJ, El Othmani MM, Tzeng TH, Mihalko WM, Chambers MC, Grupp TM.

J Orthop Res. 2016 May;34(5):737-44. doi: 10.1002/jor.23184. Epub 2016 Feb 29. Review.

27.

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.

Wang X, Slebos RJ, Chambers MC, Tabb DL, Liebler DC, Zhang B.

Mol Cell Proteomics. 2016 Mar;15(3):1164-75. doi: 10.1074/mcp.M115.052860. Epub 2015 Dec 11.

28.

Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts.

Tabb DL, Wang X, Carr SA, Clauser KR, Mertins P, Chambers MC, Holman JD, Wang J, Zhang B, Zimmerman LJ, Chen X, Gunawardena HP, Davies SR, Ellis MJ, Li S, Townsend RR, Boja ES, Ketchum KA, Kinsinger CR, Mesri M, Rodriguez H, Liu T, Kim S, McDermott JE, Payne SH, Petyuk VA, Rodland KD, Smith RD, Yang F, Chan DW, Zhang B, Zhang H, Zhang Z, Zhou JY, Liebler DC.

J Proteome Res. 2016 Mar 4;15(3):691-706. doi: 10.1021/acs.jproteome.5b00859. Epub 2015 Dec 22.

29.

CORRECTING INHOMOGENEITY-INDUCED DISTORTION IN FMRI USING NON-RIGID REGISTRATION.

Chambers MC, Bhushan C, Haldar JP, Leahy RM, Shattuck DW.

Proc IEEE Int Symp Biomed Imaging. 2015 Apr;2015:1364-1367.

30.

Conditions Affecting Social Space in Drosophila melanogaster.

McNeil AR, Jolley SN, Akinleye AA, Nurilov M, Rouzyi Z, Milunovich AJ, Chambers MC, Simon AF.

J Vis Exp. 2015 Nov 5;(105):e53242. doi: 10.3791/53242.

31.

The Molecular Epidemiological Study of HCV Subtypes among Intravenous Drug Users and Non-Injection Drug Users in China.

Tao J, Liang J, Zhang H, Pei L, Qian HZ, Chambers MC, Jiang Y, Xiao Y.

PLoS One. 2015 Oct 14;10(10):e0140263. doi: 10.1371/journal.pone.0140263. eCollection 2015.

32.

The 2012/2013 ABRF Proteomic Research Group Study: Assessing Longitudinal Intralaboratory Variability in Routine Peptide Liquid Chromatography Tandem Mass Spectrometry Analyses.

Bennett KL, Wang X, Bystrom CE, Chambers MC, Andacht TM, Dangott LJ, Elortza F, Leszyk J, Molina H, Moritz RL, Phinney BS, Thompson JW, Bunger MK, Tabb DL.

Mol Cell Proteomics. 2015 Dec;14(12):3299-309. doi: 10.1074/mcp.O115.051888. Epub 2015 Oct 4.

33.

Correcting systematic bias and instrument measurement drift with mzRefinery.

Gibbons BC, Chambers MC, Monroe ME, Tabb DL, Payne SH.

Bioinformatics. 2015 Dec 1;31(23):3838-40. doi: 10.1093/bioinformatics/btv437. Epub 2015 Aug 4.

34.

Systemic bacterial infection and immune defense phenotypes in Drosophila melanogaster.

Khalil S, Jacobson E, Chambers MC, Lazzaro BP.

J Vis Exp. 2015 May 13;(99):e52613. doi: 10.3791/52613.

35.

Thorax injury lowers resistance to infection in Drosophila melanogaster.

Chambers MC, Jacobson E, Khalil S, Lazzaro BP.

Infect Immun. 2014 Oct;82(10):4380-9. doi: 10.1128/IAI.02415-14. Epub 2014 Aug 4.

36.

Proteogenomic characterization of human colon and rectal cancer.

Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC; NCI CPTAC.

Nature. 2014 Sep 18;513(7518):382-7. doi: 10.1038/nature13438. Epub 2014 Jul 20.

37.

QC metrics from CPTAC raw LC-MS/MS data interpreted through multivariate statistics.

Wang X, Chambers MC, Vega-Montoto LJ, Bunk DM, Stein SE, Tabb DL.

Anal Chem. 2014 Mar 4;86(5):2497-509. doi: 10.1021/ac4034455. Epub 2014 Feb 17.

38.

ANALYZING IMAGING BIOMARKERS FOR TRAUMATIC BRAIN INJURY USING 4D MODELING OF LONGITUDINAL MRI.

Wang B, Prastawa M, Irimia A, Chambers MC, Sadeghi N, Vespa PM, van Horn JD, Gerig G.

Proc IEEE Int Symp Biomed Imaging. 2013 Dec 31;2013:1392-1395.

39.

Proteome informatics research group (iPRG)_2012: a study on detecting modified peptides in a complex mixture.

Chalkley RJ, Bandeira N, Chambers MC, Clauser KR, Cottrell JS, Deutsch EW, Kapp EA, Lam HH, McDonald WH, Neubert TA, Sun RX.

Mol Cell Proteomics. 2014 Jan;13(1):360-71. doi: 10.1074/mcp.M113.032813. Epub 2013 Oct 31.

40.

Electroencephalographic inverse localization of brain activity in acute traumatic brain injury as a guide to surgery, monitoring and treatment.

Irimia A, Goh SY, Torgerson CM, Stein NR, Chambers MC, Vespa PM, Van Horn JD.

Clin Neurol Neurosurg. 2013 Oct;115(10):2159-65. doi: 10.1016/j.clineuro.2013.08.003. Epub 2013 Aug 12.

41.

Multimodal deformable registration of traumatic brain injury MR volumes via the Bhattacharyya distance.

Lou Y, Irimia A, Vela PA, Chambers MC, Van Horn JD, Vespa PM, Tannenbaum AR.

IEEE Trans Biomed Eng. 2013 Sep;60(9):2511-20. doi: 10.1109/TBME.2013.2259625.

42.

IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

Chen YY, Chambers MC, Li M, Ham AJ, Turner JL, Zhang B, Tabb DL.

J Proteome Res. 2013 Sep 6;12(9):4111-21. doi: 10.1021/pr400438q. Epub 2013 Aug 12.

43.

Forward and inverse electroencephalographic modeling in health and in acute traumatic brain injury.

Irimia A, Goh SY, Torgerson CM, Chambers MC, Kikinis R, Van Horn JD.

Clin Neurophysiol. 2013 Nov;124(11):2129-45. doi: 10.1016/j.clinph.2013.04.336. Epub 2013 Jun 6.

44.

Basophile: accurate fragment charge state prediction improves peptide identification rates.

Wang D, Dasari S, Chambers MC, Holman JD, Chen K, Liebler DC, Orton DJ, Purvine SO, Monroe ME, Chung CY, Rose KL, Tabb DL.

Genomics Proteomics Bioinformatics. 2013 Apr;11(2):86-95. doi: 10.1016/j.gpb.2012.11.004. Epub 2013 Mar 8.

45.

Modeling 4D Changes in Pathological Anatomy using Domain Adaptation: Analysis of TBI Imaging using a Tumor Database.

Wang B, Prastawa M, Saha A, Awate SP, Irimia A, Chambers MC, Vespa PM, Van Horn JD, Pascucci V, Gerig G.

Multimodal Brain Image Anal (2013). 2013;8159:31-39.

46.

Listeria monocytogenes infection causes metabolic shifts in Drosophila melanogaster.

Chambers MC, Song KH, Schneider DS.

PLoS One. 2012;7(12):e50679. doi: 10.1371/journal.pone.0050679. Epub 2012 Dec 13.

47.

How the fly balances its ability to combat different pathogens.

Chambers MC, Lightfield KL, Schneider DS.

PLoS Pathog. 2012;8(12):e1002970. doi: 10.1371/journal.ppat.1002970. Epub 2012 Dec 13.

48.

A cross-platform toolkit for mass spectrometry and proteomics.

Chambers MC, Maclean B, Burke R, Amodei D, Ruderman DL, Neumann S, Gatto L, Fischer B, Pratt B, Egertson J, Hoff K, Kessner D, Tasman N, Shulman N, Frewen B, Baker TA, Brusniak MY, Paulse C, Creasy D, Flashner L, Kani K, Moulding C, Seymour SL, Nuwaysir LM, Lefebvre B, Kuhlmann F, Roark J, Rainer P, Detlev S, Hemenway T, Huhmer A, Langridge J, Connolly B, Chadick T, Holly K, Eckels J, Deutsch EW, Moritz RL, Katz JE, Agus DB, MacCoss M, Tabb DL, Mallick P.

Nat Biotechnol. 2012 Oct;30(10):918-20. doi: 10.1038/nbt.2377. No abstract available.

49.

Infection-related declines in chill coma recovery and negative geotaxis in Drosophila melanogaster.

Linderman JA, Chambers MC, Gupta AS, Schneider DS.

PLoS One. 2012;7(9):e41907. doi: 10.1371/journal.pone.0041907. Epub 2012 Sep 13.

50.

Balancing resistance and infection tolerance through metabolic means.

Chambers MC, Schneider DS.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):13886-7. doi: 10.1073/pnas.1211724109. Epub 2012 Aug 13. No abstract available.

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