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Items: 27

1.

Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).

García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Oliveira RS, Soltis DE, Soltis PS.

Mol Phylogenet Evol. 2017 Jun;111:231-247. doi: 10.1016/j.ympev.2017.04.003. Epub 2017 Apr 6.

PMID:
28390909
2.

The mammalian LINC complex regulates genome transcriptional responses to substrate rigidity.

Alam SG, Zhang Q, Prasad N, Li Y, Chamala S, Kuchibhotla R, Kc B, Aggarwal V, Shrestha S, Jones AL, Levy SE, Roux KJ, Nickerson JA, Lele TP.

Sci Rep. 2016 Dec 1;6:38063. doi: 10.1038/srep38063.

3.

Endometrial Thickness as Measured by Transvaginal Ultrasound and the Corresponding Histopathologic Diagnosis in Women With Postmenopausal Bleeding.

Patel V, Wilkinson EJ, Chamala S, Lu X, Castagno J, Rush D.

Int J Gynecol Pathol. 2017 Jul;36(4):348-355. doi: 10.1097/PGP.0000000000000344.

PMID:
27801761
4.

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS.

G3 (Bethesda). 2015 Jun 11;5(8):1685-94. doi: 10.1534/g3.115.019588.

5.

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.

Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, De Smet R, Barbazuk WB, Soltis DE, Soltis PS.

Appl Plant Sci. 2015 Apr 6;3(4). pii: apps.1400115. doi: 10.3732/apps.1400115. eCollection 2015 Apr.

6.

Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.

Chamala S, Feng G, Chavarro C, Barbazuk WB.

Front Bioeng Biotechnol. 2015 Mar 26;3:33. doi: 10.3389/fbioe.2015.00033. eCollection 2015.

7.

Primers for low-copy nuclear genes in Metrosideros and cross-amplification in Myrtaceae.

Pillon Y, Johansen J, Sakishima T, Chamala S, Barbazuk WB, Stacy EA.

Appl Plant Sci. 2014 Oct 2;2(10). pii: apps.1400049. doi: 10.3732/apps.1400049. eCollection 2014 Oct.

8.

Ritonavir-Mediated Induction of Apoptosis in Pancreatic Cancer Occurs via the RB/E2F-1 and AKT Pathways.

Batchu RB, Gruzdyn OV, Bryant CS, Qazi AM, Kumar S, Chamala S, Kung ST, Sanka RS, Puttagunta US, Weaver DW, Gruber SA.

Pharmaceuticals (Basel). 2014 Jan 9;7(1):46-57. doi: 10.3390/ph7010046.

9.

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.

Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, Barbazuk WB.

Science. 2013 Dec 20;342(6165):1516-7. doi: 10.1126/science.1241130.

PMID:
24357320
10.

EZH2-shRNA-mediated upregulation of p21waf1/cip1 and its transcriptional enhancers with concomitant downmodulation of mutant p53 in pancreatic ductal adenocarcinoma.

Batchu RB, Qazi AM, Gruzdyn OV, Semaan A, Seward SM, Chamala S, Dhulipala VB, Bouwman DL, Weaver DW, Gruber SA.

Surgery. 2013 Oct;154(4):739-46; discussion 746-7. doi: 10.1016/j.surg.2013.06.041.

PMID:
24074410
11.

Validation of reference transcripts in strawberry (Fragaria spp.).

Clancy MA, Rosli HG, Chamala S, Barbazuk WB, Civello PM, Folta KM.

Mol Genet Genomics. 2013 Dec;288(12):671-81. doi: 10.1007/s00438-013-0780-6. Epub 2013 Sep 24.

PMID:
24061528
12.

Primers for low-copy nuclear genes in the Hawaiian endemic Clermontia (Campanulaceae) and cross-amplification in Lobelioideae.

Pillon Y, Johansen J, Sakishima T, Chamala S, Barbazuk WB, Stacy EA.

Appl Plant Sci. 2013 May 16;1(6). pii: apps.1200450. doi: 10.3732/apps.1200450. eCollection 2013 Jun.

13.

EZH2 blockade by RNA interference inhibits growth of ovarian cancer by facilitating re-expression of p21(waf1/cip1) and by inhibiting mutant p53.

Seward S, Semaan A, Qazi AM, Gruzdyn OV, Chamala S, Bryant CC, Kumar S, Cameron D, Sethi S, Ali-Fehmi R, Morris R, Bouwman DL, Munkarah AR, Weaver DW, Gruber SA, Batchu RB.

Cancer Lett. 2013 Aug 9;336(1):53-60. doi: 10.1016/j.canlet.2013.04.012. Epub 2013 Apr 18.

PMID:
23603558
14.

Crystal structure of human Karyopherin β2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2.

Soniat M, Sampathkumar P, Collett G, Gizzi AS, Banu RN, Bhosle RC, Chamala S, Chowdhury S, Fiser A, Glenn AS, Hammonds J, Hillerich B, Khafizov K, Love JD, Matikainen B, Seidel RD, Toro R, Rajesh Kumar P, Bonanno JB, Chook YM, Almo SC.

J Struct Funct Genomics. 2013 Jun;14(2):31-5. doi: 10.1007/s10969-013-9150-1. Epub 2013 Mar 28.

15.

Potential use of low-copy nuclear genes in DNA barcoding: a comparison with plastid genes in two Hawaiian plant radiations.

Pillon Y, Johansen J, Sakishima T, Chamala S, Barbazuk WB, Roalson EH, Price DK, Stacy EA.

BMC Evol Biol. 2013 Feb 9;13:35. doi: 10.1186/1471-2148-13-35.

16.

Restoration of E-cadherin expression in pancreatic ductal adenocarcinoma treated with microRNA-101.

Qazi AM, Gruzdyn O, Semaan A, Seward S, Chamala S, Dhulipala V, Sethi S, Ali-Fehmi R, Philip PA, Bouwman DL, Weaver DW, Gruber SA, Batchu RB.

Surgery. 2012 Oct;152(4):704-11; discussion 711-3. doi: 10.1016/j.surg.2012.07.020. Epub 2012 Sep 1.

PMID:
22943841
17.

Next-generation sequencing and genome evolution in allopolyploids.

Buggs RJ, Renny-Byfield S, Chester M, Jordon-Thaden IE, Viccini LF, Chamala S, Leitch AR, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE.

Am J Bot. 2012 Feb;99(2):372-82. doi: 10.3732/ajb.1100395. Epub 2012 Jan 20. Review.

18.

Rapid, repeated, and clustered loss of duplicate genes in allopolyploid plant populations of independent origin.

Buggs RJ, Chamala S, Wu W, Tate JA, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.

Curr Biol. 2012 Feb 7;22(3):248-52. doi: 10.1016/j.cub.2011.12.027. Epub 2012 Jan 19.

19.

MicroRNA-101 inhibits growth of epithelial ovarian cancer by relieving chromatin-mediated transcriptional repression of p21(waf¹/cip¹).

Semaan A, Qazi AM, Seward S, Chamala S, Bryant CS, Kumar S, Morris R, Steffes CP, Bouwman DL, Munkarah AR, Weaver DW, Gruber SA, Batchu RB.

Pharm Res. 2011 Dec;28(12):3079-90. doi: 10.1007/s11095-011-0547-x. Epub 2011 Aug 5.

PMID:
21818714
20.

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure.

Zuccolo A, Bowers JE, Estill JC, Xiong Z, Luo M, Sebastian A, Goicoechea JL, Collura K, Yu Y, Jiao Y, Duarte J, Tang H, Ayyampalayam S, Rounsley S, Kudrna D, Paterson AH, Pires JC, Chanderbali A, Soltis DE, Chamala S, Barbazuk B, Soltis PS, Albert VA, Ma H, Mandoli D, Banks J, Carlson JE, Tomkins J, dePamphilis CW, Wing RA, Leebens-Mack J.

Genome Biol. 2011;12(5):R48. doi: 10.1186/gb-2011-12-5-r48. Epub 2011 May 27.

21.

Metabolic engineering of soybean affords improved phytosterol seed traits.

Neelakandan AK, Chamala S, Valliyodan B, Nes WD, Nguyen HT.

Plant Biotechnol J. 2012 Jan;10(1):12-9. doi: 10.1111/j.1467-7652.2011.00623.x. Epub 2011 May 9.

22.

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.

Mol Ecol. 2010 Mar;19 Suppl 1:132-46. doi: 10.1111/j.1365-294X.2009.04469.x.

PMID:
20331776
23.

Sulforaphane induces cell cycle arrest by protecting RB-E2F-1 complex in epithelial ovarian cancer cells.

Bryant CS, Kumar S, Chamala S, Shah J, Pal J, Haider M, Seward S, Qazi AM, Morris R, Semaan A, Shammas MA, Steffes C, Potti RB, Prasad M, Weaver DW, Batchu RB.

Mol Cancer. 2010 Mar 2;9:47. doi: 10.1186/1476-4598-9-47.

24.

Ritonavir blocks AKT signaling, activates apoptosis and inhibits migration and invasion in ovarian cancer cells.

Kumar S, Bryant CS, Chamala S, Qazi A, Seward S, Pal J, Steffes CP, Weaver DW, Morris R, Malone JM, Shammas MA, Prasad M, Batchu RB.

Mol Cancer. 2009 Apr 22;8:26. doi: 10.1186/1476-4598-8-26.

25.

Sterol 24-C-methyltransferase: an enzymatic target for the disruption of ergosterol biosynthesis and homeostasis in Cryptococcus neoformans.

Nes WD, Zhou W, Ganapathy K, Liu J, Vatsyayan R, Chamala S, Hernandez K, Miranda M.

Arch Biochem Biophys. 2009 Jan 15;481(2):210-8. doi: 10.1016/j.abb.2008.11.003. Epub 2008 Nov 8.

PMID:
19014901
26.

Evolutionary selective pressure on three mitochondrial SNPs is consistent with their influence on metabolic efficiency in Pima Indians.

Chamala S, Beckstead WA, Rowe MJ, McClellan DA.

Int J Bioinform Res Appl. 2007;3(4):504-22.

PMID:
18048316
27.

A survey of pet owner views of veterinarians in Brisbane environs - a behavioral approach.

Chamala S, Crouch BR.

Aust Vet J. 1981 Nov;57(11):485-92.

PMID:
7342932

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