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Items: 44

1.

Boundaries of eliminated heterochromatin of Tetrahymena are positioned by the DNA-binding protein Ltl1.

Jaspan VN, Taye ME, Carle CM, Chung JJ, Chalker DL.

Nucleic Acids Res. 2019 Jun 13. pii: gkz504. doi: 10.1093/nar/gkz504. [Epub ahead of print]

PMID:
31194876
2.

Transgenerational Inheritance: Parental Guidance Suggested.

Chalker DL.

Curr Biol. 2018 Jun 18;28(12):R702-R704. doi: 10.1016/j.cub.2018.05.041.

PMID:
29920263
3.

Diversification of HP1-like Chromo Domain Proteins in Tetrahymena thermophila.

Wiley EA, Horrell S, Yoshino A, Schornak CC, Bagnani C, Chalker DL.

J Eukaryot Microbiol. 2018 Jan;65(1):104-116. doi: 10.1111/jeu.12443. Epub 2017 Aug 3.

4.

Corrigendum: Rapid generation of hypomorphic mutations.

Arthur LL, Chung JJ, Janakirama P, Keefer KM, Kolotilin I, Pavlovic-Djuranovic S, Chalker DL, Grbic V, Green R, Menassa R, True HL, Skeath JB, Djuranovic S.

Nat Commun. 2017 Feb 16;8:14705. doi: 10.1038/ncomms14705. No abstract available.

5.

Rapid generation of hypomorphic mutations.

Arthur LL, Chung JJ, Jankirama P, Keefer KM, Kolotilin I, Pavlovic-Djuranovic S, Chalker DL, Grbic V, Green R, Menassa R, True HL, Skeath JB, Djuranovic S.

Nat Commun. 2017 Jan 20;8:14112. doi: 10.1038/ncomms14112.

6.

One genome's junk is another's garbage.

Bright LJ, Chalker DL.

Elife. 2016 Dec 23;5. pii: e23447. doi: 10.7554/eLife.23447.

7.

DRH1, a p68-related RNA helicase gene, is required for chromosome breakage in Tetrahymena.

McDaniel SL, Zweifel E, Harris PK, Yao MC, Cole ES, Chalker DL.

Biol Open. 2016 Dec 15;5(12):1790-1798. doi: 10.1242/bio.021576.

8.

A Parallel G Quadruplex-Binding Protein Regulates the Boundaries of DNA Elimination Events of Tetrahymena thermophila.

Carle CM, Zaher HS, Chalker DL.

PLoS Genet. 2016 Mar 7;12(3):e1005842. doi: 10.1371/journal.pgen.1005842. eCollection 2016 Mar.

9.

SUMOylation is developmentally regulated and required for cell pairing during conjugation in Tetrahymena thermophila.

Nasir AM, Yang Q, Chalker DL, Forney JD.

Eukaryot Cell. 2015 Feb;14(2):170-81. doi: 10.1128/EC.00252-14. Epub 2014 Dec 19.

10.

Morphogenesis: a Mob rules from the rear.

Chalker DL, Frankel J.

Curr Biol. 2014 Aug 4;24(15):R700-2. doi: 10.1016/j.cub.2014.06.042.

11.

LIA4 encodes a chromoshadow domain protein required for genomewide DNA rearrangements in Tetrahymena thermophila.

Horrell SA, Chalker DL.

Eukaryot Cell. 2014 Oct;13(10):1300-11. doi: 10.1128/EC.00125-14. Epub 2014 Aug 1.

12.

Epigenetics: Keeping one's sex.

Chalker DL.

Nature. 2014 May 22;509(7501):430-1. doi: 10.1038/nature13333. Epub 2014 May 7. No abstract available.

PMID:
24805241
13.
14.

Epigenetics of ciliates.

Chalker DL, Meyer E, Mochizuki K.

Cold Spring Harb Perspect Biol. 2013 Dec 1;5(12):a017764. doi: 10.1101/cshperspect.a017764. Review.

15.

LIA5 is required for nuclear reorganization and programmed DNA rearrangements occurring during tetrahymena macronuclear differentiation.

Shieh AW, Chalker DL.

PLoS One. 2013 Sep 17;8(9):e75337. doi: 10.1371/journal.pone.0075337. eCollection 2013.

16.

Genome biology: the sleek and oh-so chic Oxytricha nanochromosomes.

Horrell SA, Chalker DL.

Curr Biol. 2013 Apr 8;23(7):R284-5. doi: 10.1016/j.cub.2013.02.041.

17.

Transformation and strain engineering of Tetrahymena.

Chalker DL.

Methods Cell Biol. 2012;109:327-45. doi: 10.1016/B978-0-12-385967-9.00011-6.

PMID:
22444150
18.

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila.

Fass JN, Joshi NA, Couvillion MT, Bowen J, Gorovsky MA, Hamilton EP, Orias E, Hong K, Coyne RS, Eisen JA, Chalker DL, Lin D, Collins K.

G3 (Bethesda). 2011 Nov;1(6):515-22. doi: 10.1534/g3.111.000927. Epub 2011 Nov 1.

19.

Zygotic expression of the double-stranded RNA binding motif protein Drb2p is required for DNA elimination in the ciliate Tetrahymena thermophila.

Motl JA, Chalker DL.

Eukaryot Cell. 2011 Dec;10(12):1648-59. doi: 10.1128/EC.05216-11. Epub 2011 Oct 21.

20.

DNA elimination in ciliates: transposon domestication and genome surveillance.

Chalker DL, Yao MC.

Annu Rev Genet. 2011;45:227-46. doi: 10.1146/annurev-genet-110410-132432. Epub 2011 Sep 9. Review.

PMID:
21910632
21.

The conjugation-specific Die5 protein is required for development of the somatic nucleus in both Paramecium and Tetrahymena.

Matsuda A, Shieh AW, Chalker DL, Forney JD.

Eukaryot Cell. 2010 Jul;9(7):1087-99. doi: 10.1128/EC.00379-09. Epub 2010 May 21.

22.

Subtraction by addition: domesticated transposases in programmed DNA elimination.

Motl JA, Chalker DL.

Genes Dev. 2009 Nov 1;23(21):2455-60. doi: 10.1101/gad.1864609.

23.

Transposons that clean up after themselves.

Chalker DL.

Genome Biol. 2009;10(6):224. doi: 10.1186/gb-2009-10-6-224. Epub 2009 Jun 15. Review.

24.

Ciliate biology: dynamin goes nuclear.

Chalker DL.

Curr Biol. 2008 Oct 14;18(19):R923-5. doi: 10.1016/j.cub.2008.07.080.

25.

Dynamic nuclear reorganization during genome remodeling of Tetrahymena.

Chalker DL.

Biochim Biophys Acta. 2008 Nov;1783(11):2130-6. doi: 10.1016/j.bbamcr.2008.07.012. Epub 2008 Jul 28. Review.

26.

Nucleus-specific importin alpha proteins and nucleoporins regulate protein import and nuclear division in the binucleate Tetrahymena thermophila.

Malone CD, Falkowska KA, Li AY, Galanti SE, Kanuru RC, LaMont EG, Mazzarella KC, Micev AJ, Osman MM, Piotrowski NK, Suszko JW, Timm AC, Xu MM, Liu L, Chalker DL.

Eukaryot Cell. 2008 Sep;7(9):1487-99. doi: 10.1128/EC.00193-08. Epub 2008 Aug 1.

27.
28.

Identification of novel chromatin-associated proteins involved in programmed genome rearrangements in Tetrahymena.

Yao MC, Yao CH, Halasz LM, Fuller P, Rexer CH, Wang SH, Jain R, Coyne RS, Chalker DL.

J Cell Sci. 2007 Jun 15;120(Pt 12):1978-89. Epub 2007 May 22.

29.

Genome evolution: a double take for Paramecium.

Chalker DL, Stover NA.

Curr Biol. 2007 Feb 6;17(3):R97-9.

30.

The germ line limited M element of Tetrahymena is targeted for elimination from the somatic genome by a homology-dependent mechanism.

Kowalczyk CA, Anderson AM, Arce-Larreta M, Chalker DL.

Nucleic Acids Res. 2006;34(20):5778-89. Epub 2006 Oct 19.

31.

Genome rearrangements: mother knows best!

Chalker DL.

Curr Biol. 2005 Oct 25;15(20):R827-9. Review.

32.
33.
35.

Microinjection of Tetrahymena thermophila.

Chalker DL, Ward JG, Randolph C, Yao MC.

Methods Cell Biol. 2000;62:469-84. Review. No abstract available.

PMID:
10503212
36.

Flanking regulatory sequences of the Tetrahymena R deletion element determine the boundaries of DNA rearrangement.

Chalker DL, La Terza A, Wilson A, Kroenke CD, Yao MC.

Mol Cell Biol. 1999 Aug;19(8):5631-41.

38.

Genome downsizing during ciliate development: nuclear division of labor through chromosome restructuring.

Coyne RS, Chalker DL, Yao MC.

Annu Rev Genet. 1996;30:557-78. Review.

PMID:
8982465
39.
40.

Ty3 GAG3 and POL3 genes encode the components of intracellular particles.

Hansen LJ, Chalker DL, Orlinsky KJ, Sandmeyer SB.

J Virol. 1992 Mar;66(3):1414-24.

41.

Ty3 integrates within the region of RNA polymerase III transcription initiation.

Chalker DL, Sandmeyer SB.

Genes Dev. 1992 Jan;6(1):117-28.

42.
43.

Integration specificity of retrotransposons and retroviruses.

Sandmeyer SB, Hansen LJ, Chalker DL.

Annu Rev Genet. 1990;24:491-518. Review.

PMID:
1965102
44.

Ty3, a yeast retrotransposon associated with tRNA genes, has homology to animal retroviruses.

Hansen LJ, Chalker DL, Sandmeyer SB.

Mol Cell Biol. 1988 Dec;8(12):5245-56.

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