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Items: 1 to 50 of 69

1.

Whole-Genome Resequencing of a Worldwide Collection of Rapeseed Accessions Reveals the Genetic Basis of Ecotype Divergence.

Wu D, Liang Z, Yan T, Xu Y, Xuan L, Tang J, Zhou G, Lohwasser U, Hua S, Wang H, Chen X, Wang Q, Zhu L, Maodzeka A, Hussain N, Li Z, Li X, Shamsi IH, Jilani G, Wu L, Zheng H, Zhang G, Chalhoub B, Shen L, Yu H, Jiang L.

Mol Plant. 2019 Jan 7;12(1):30-43. doi: 10.1016/j.molp.2018.11.007. Epub 2018 Nov 22.

PMID:
30472326
2.

Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family.

Klymiuk V, Yaniv E, Huang L, Raats D, Fatiukha A, Chen S, Feng L, Frenkel Z, Krugman T, Lidzbarsky G, Chang W, Jääskeläinen MJ, Schudoma C, Paulin L, Laine P, Bariana H, Sela H, Saleem K, Sørensen CK, Hovmøller MS, Distelfeld A, Chalhoub B, Dubcovsky J, Korol AB, Schulman AH, Fahima T.

Nat Commun. 2018 Oct 3;9(1):3735. doi: 10.1038/s41467-018-06138-9.

3.

Shifting the limits in wheat research and breeding using a fully annotated reference genome.

International Wheat Genome Sequencing Consortium (IWGSC); IWGSC RefSeq principal investigators:, Appels R, Eversole K, Feuillet C, Keller B, Rogers J, Stein N; IWGSC whole-genome assembly principal investigators:, Pozniak CJ, Stein N, Choulet F, Distelfeld A, Eversole K, Poland J, Rogers J, Ronen G, Sharpe AG; Whole-genome sequencing and assembly:, Pozniak C, Ronen G, Stein N, Barad O, Baruch K, Choulet F, Keeble-Gagnère G, Mascher M, Sharpe AG, Ben-Zvi G, Josselin AA; Hi-C data-based scaffolding:, Stein N, Mascher M, Himmelbach A; Whole-genome assembly quality control and analyses:, Choulet F, Keeble-Gagnère G, Mascher M, Rogers J, Balfourier F, Gutierrez-Gonzalez J, Hayden M, Josselin AA, Koh C, Muehlbauer G, Pasam RK, Paux E, Pozniak CJ, Rigault P, Sharpe AG, Tibbits J, Tiwari V; Pseudomolecule assembly:, Choulet F, Keeble-Gagnère G, Mascher M, Josselin AA, Rogers J; RefSeq genome structure and gene analyses:, Spannagl M, Choulet F, Lang D, Gundlach H, Haberer G, Keeble-Gagnère G, Mayer KFX, Ormanbekova D, Paux E, Prade V, Šimková H, Wicker T; Automated annotation:, Choulet F, Spannagl M, Swarbreck D, Rimbert H, Felder M, Guilhot N, Gundlach H, Haberer G, Kaithakottil G, Keilwagen J, Lang D, Leroy P, Lux T, Mayer KFX, Twardziok S, Venturini L; Manual gene curation:, Appels R, Rimbert H, Choulet F, Juhász A, Keeble-Gagnère G; Subgenome comparative analyses:, Choulet F, Spannagl M, Lang D, Abrouk M, Haberer G, Keeble-Gagnère G, Mayer KFX, Wicker T; Transposable elements:, Choulet F, Wicker T, Gundlach H, Lang D, Spannagl M; Phylogenomic analyses:, Lang D, Spannagl M, Appels R, Fischer I; Transcriptome analyses and RNA-seq data:, Uauy C, Borrill P, Ramirez-Gonzalez RH, Appels R, Arnaud D, Chalabi S, Chalhoub B, Choulet F, Cory A, Datla R, Davey MW, Hayden M, Jacobs J, Lang D, Robinson SJ, Spannagl M, Steuernagel B, Tibbits J, Tiwari V, van Ex F, Wulff BBH; Whole-genome methylome:, Pozniak CJ, Robinson SJ, Sharpe AG, Cory A; Histone mark analyses:, Benhamed M, Paux E, Bendahmane A, Concia L, Latrasse D; BAC chromosome MTP IWGSC–Bayer Whole-Genome Profiling (WGP) tags:, Rogers J, Jacobs J, Alaux M, Appels R, Bartoš J, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, Letellier T, Olsen OA, Šimková H, Singh K, Valárik M, van der Vossen E, Vautrin S, Weining S; Chromosome LTC mapping and physical mapping quality control:, Korol A, Frenkel Z, Fahima T, Glikson V, Raats D, Rogers J; RH mapping:, Tiwari V, Gill B, Paux E, Poland J; Optical mapping:, Doležel J, Číhalíková J, Šimková H, Toegelová H, Vrána J; Recombination analyses:, Sourdille P, Darrier B; Gene family analyses:, Appels R, Spannagl M, Lang D, Fischer I, Ormanbekova D, Prade V; CBF gene family:, Barabaschi D, Cattivelli L; Dehydrin gene family:, Hernandez P, Galvez S, Budak H; NLR gene family:, Steuernagel B, Jones JDG, Witek K, Wulff BBH, Yu G; PPR gene family:, Small I, Melonek J, Zhou R; Prolamin gene family:, Juhász A, Belova T, Appels R, Olsen OA; WAK gene family:, Kanyuka K, King R; Stem solidness (SSt1) QTL team:, Nilsen K, Walkowiak S, Pozniak CJ, Cuthbert R, Datla R, Knox R, Wiebe K, Xiang D; Flowering locus C (FLC) gene team:, Rohde A, Golds T; Genome size analysis:, Doležel J, Čížková J, Tibbits J; MicroRNA and tRNA annotation:, Budak H, Akpinar BA, Biyiklioglu S; Genetic maps and mapping:, Muehlbauer G, Poland J, Gao L, Gutierrez-Gonzalez J, N'Daiye A; BAC libraries and chromosome sorting:, Doležel J, Šimková H, Číhalíková J, Kubaláková M, Šafář J, Vrána J; BAC pooling, BAC library repository, and access:, Berges H, Bellec A, Vautrin S; IWGSC sequence and data repository and access:, Alaux M, Alfama F, Adam-Blondon AF, Flores R, Guerche C, Letellier T, Loaec M, Quesneville H; Physical maps and BAC-based sequences:; 1A BAC sequencing and assembly:, Pozniak CJ, Sharpe AG, Walkowiak S, Budak H, Condie J, Ens J, Koh C, Maclachlan R, Tan Y, Wicker T; 1B BAC sequencing and assembly:, Choulet F, Paux E, Alberti A, Aury JM, Balfourier F, Barbe V, Couloux A, Cruaud C, Labadie K, Mangenot S, Wincker P; 1D, 4D, and 6D physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 2AL physical mapping:, Singh K, Chhuneja P, Gupta OP, Jindal S, Kaur P, Malik P, Sharma P, Yadav B; 2AS physical mapping:, Singh NK, Khurana J, Chaudhary C, Khurana P, Kumar V, Mahato A, Mathur S, Sevanthi A, Sharma N, Tomar RS; 2B, 2D, 4B, 5BL, and 5DL IWGSC–Bayer Whole-Genome Profiling (WGP) physical maps:, Rogers J, Jacobs J, Alaux M, Bellec A, Berges H, Doležel J, Feuillet C, Frenkel Z, Gill B, Korol A, van der Vossen E, Vautrin S; 3AL physical mapping:, Gill B, Kaur G, Luo M, Sehgal S; 3DS physical mapping and BAC sequencing and assembly:, Bartoš J, Holušová K, Plíhal O; 3DL BAC sequencing and assembly:, Clark MD, Heavens D, Kettleborough G, Wright J; 4A physical mapping, BAC sequencing, assembly, and annotation:, Valárik M, Abrouk M, Balcárková B, Holušová K, Hu Y, Luo M; 5BS BAC sequencing and assembly:, Salina E, Ravin N, Skryabin K, Beletsky A, Kadnikov V, Mardanov A, Nesterov M, Rakitin A, Sergeeva E; 6B BAC sequencing and assembly:, Handa H, Kanamori H, Katagiri S, Kobayashi F, Nasuda S, Tanaka T, Wu J; 7A physical mapping and BAC sequencing:, Appels R, Hayden M, Keeble-Gagnère G, Rigault P, Tibbits J; 7B physical mapping, BAC sequencing, and assembly:, Olsen OA, Belova T, Cattonaro F, Jiumeng M, Kugler K, Mayer KFX, Pfeifer M, Sandve S, Xun X, Zhan B; 7DS BAC sequencing and assembly:, Šimková H, Abrouk M, Batley J, Bayer PE, Edwards D, Hayashi S, Toegelová H, Tulpová Z, Visendi P; 7DL physical mapping and BAC sequencing:, Weining S, Cui L, Du X, Feng K, Nie X, Tong W, Wang L; Figures:, Borrill P, Gundlach H, Galvez S, Kaithakottil G, Lang D, Lux T, Mascher M, Ormanbekova D, Prade V, Ramirez-Gonzalez RH, Spannagl M, Stein N, Uauy C, Venturini L; Manuscript writing team:, Stein N, Appels R, Eversole K, Rogers J, Borrill P, Cattivelli L, Choulet F, Hernandez P, Kanyuka K, Lang D, Mascher M, Nilsen K, Paux E, Pozniak CJ, Ramirez-Gonzalez RH, Šimková H, Small I, Spannagl M, Swarbreck D, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.

PMID:
30115783
4.

The transcriptional landscape of polyploid wheat.

Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C.

Science. 2018 Aug 17;361(6403). pii: eaar6089. doi: 10.1126/science.aar6089.

PMID:
30115782
5.

Surviving a Genome Collision: Genomic Signatures of Allopolyploidization in the Recent Crop Species Brassica napus.

Samans B, Chalhoub B, Snowdon RJ.

Plant Genome. 2017 Nov;10(3). doi: 10.3835/plantgenome2017.02.0013.

6.

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10.

7.

The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype.

Sun F, Fan G, Hu Q, Zhou Y, Guan M, Tong C, Li J, Du D, Qi C, Jiang L, Liu W, Huang S, Chen W, Yu J, Mei D, Meng J, Zeng P, Shi J, Liu K, Wang X, Wang X, Long Y, Liang X, Hu Z, Huang G, Dong C, Zhang H, Li J, Zhang Y, Li L, Shi C, Wang J, Lee SM, Guan C, Xu X, Liu S, Liu X, Chalhoub B, Hua W, Wang H.

Plant J. 2017 Nov;92(3):452-468. doi: 10.1111/tpj.13669. Epub 2017 Oct 9.

8.

Assembly and comparison of two closely related Brassica napus genomes.

Bayer PE, Hurgobin B, Golicz AA, Chan CK, Yuan Y, Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King GJ, Batley J, Edwards D.

Plant Biotechnol J. 2017 Dec;15(12):1602-1610. doi: 10.1111/pbi.12742. Epub 2017 Jun 14.

9.

Genome-wide identification, evolution and expression analysis of RING finger protein genes in Brassica rapa.

Alam I, Yang YQ, Wang Y, Zhu ML, Wang HB, Chalhoub B, Lu YH.

Sci Rep. 2017 Jan 17;7:40690. doi: 10.1038/srep40690.

10.

Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei.

Dinh Thi VH, Coriton O, Le Clainche I, Arnaud D, Gordon SP, Linc G, Catalan P, Hasterok R, Vogel JP, Jahier J, Chalhoub B.

PLoS One. 2016 Dec 9;11(12):e0167171. doi: 10.1371/journal.pone.0167171. eCollection 2016.

11.

Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes.

Zou J, Hu D, Liu P, Raman H, Liu Z, Liu X, Parkin IA, Chalhoub B, Meng J.

BMC Genomics. 2016 Jan 5;17:18. doi: 10.1186/s12864-015-2343-1.

12.

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei.

Yeo FK, Wang Y, Vozabova T, Huneau C, Leroy P, Chalhoub B, Qi XQ, Niks RE, Marcel TC.

Theor Appl Genet. 2016 Feb;129(2):289-304. doi: 10.1007/s00122-015-2627-5. Epub 2015 Nov 5.

13.

Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus.

Shen E, Zou J, Hubertus Behrens F, Chen L, Ye C, Dai S, Li R, Ni M, Jiang X, Qiu J, Liu Y, Wang W, Zhu QH, Chalhoub B, Bancroft I, Meng J, Cai D, Fan L.

J Exp Bot. 2015 Dec;66(22):7241-53. doi: 10.1093/jxb/erv420. Epub 2015 Sep 10.

14.

Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.

He Z, Cheng F, Li Y, Wang X, Parkin IA, Chalhoub B, Liu S, Bancroft I.

Data Brief. 2015 Jul 2;4:357-62. doi: 10.1016/j.dib.2015.06.016. eCollection 2015 Sep.

15.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

16.

Update on the genomics and basic biology of Brachypodium: International Brachypodium Initiative (IBI).

Catalan P, Chalhoub B, Chochois V, Garvin DF, Hasterok R, Manzaneda AJ, Mur LA, Pecchioni N, Rasmussen SK, Vogel JP, Voxeur A.

Trends Plant Sci. 2014 Jul;19(7):414-8. doi: 10.1016/j.tplants.2014.05.002. Epub 2014 Jun 7.

PMID:
24917149
17.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

18.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

19.

Meiotic gene evolution: can you teach a new dog new tricks?

Lloyd AH, Ranoux M, Vautrin S, Glover N, Fourment J, Charif D, Choulet F, Lassalle G, Marande W, Tran J, Granier F, Pingault L, Remay A, Marquis C, Belcram H, Chalhoub B, Feuillet C, Bergès H, Sourdille P, Jenczewski E.

Mol Biol Evol. 2014 Jul;31(7):1724-7. doi: 10.1093/molbev/msu119. Epub 2014 Apr 1.

PMID:
24694832
20.

Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence.

Orsel M, Moison M, Clouet V, Thomas J, Leprince F, Canoy AS, Just J, Chalhoub B, Masclaux-Daubresse C.

J Exp Bot. 2014 Jul;65(14):3927-47. doi: 10.1093/jxb/eru041. Epub 2014 Feb 24.

21.

Prevalence of gene expression additivity in genetically stable wheat allohexaploids.

Chelaifa H, Chagué V, Chalabi S, Mestiri I, Arnaud D, Deffains D, Lu Y, Belcram H, Huteau V, Chiquet J, Coriton O, Just J, Jahier J, Chalhoub B.

New Phytol. 2013 Feb;197(3):730-6. doi: 10.1111/nph.12108. Epub 2012 Dec 21.

22.

A dominant point mutation in a RINGv E3 ubiquitin ligase homoeologous gene leads to cleistogamy in Brassica napus.

Lu YH, Arnaud D, Belcram H, Falentin C, Rouault P, Piel N, Lucas MO, Just J, Renard M, Delourme R, Chalhoub B.

Plant Cell. 2012 Dec;24(12):4875-91. doi: 10.1105/tpc.112.104315. Epub 2012 Dec 31.

23.

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat.

Zhang Z, Belcram H, Gornicki P, Charles M, Just J, Huneau C, Magdelenat G, Couloux A, Samain S, Gill BS, Rasmussen JB, Barbe V, Faris JD, Chalhoub B.

Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18737-42. doi: 10.1073/pnas.1110552108. Epub 2011 Oct 31. Erratum in: Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1353.

24.

The genome of the mesopolyploid crop species Brassica rapa.

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun JH, Bancroft I, Cheng F, Huang S, Li X, Hua W, Wang J, Wang X, Freeling M, Pires JC, Paterson AH, Chalhoub B, Wang B, Hayward A, Sharpe AG, Park BS, Weisshaar B, Liu B, Li B, Liu B, Tong C, Song C, Duran C, Peng C, Geng C, Koh C, Lin C, Edwards D, Mu D, Shen D, Soumpourou E, Li F, Fraser F, Conant G, Lassalle G, King GJ, Bonnema G, Tang H, Wang H, Belcram H, Zhou H, Hirakawa H, Abe H, Guo H, Wang H, Jin H, Parkin IA, Batley J, Kim JS, Just J, Li J, Xu J, Deng J, Kim JA, Li J, Yu J, Meng J, Wang J, Min J, Poulain J, Wang J, Hatakeyama K, Wu K, Wang L, Fang L, Trick M, Links MG, Zhao M, Jin M, Ramchiary N, Drou N, Berkman PJ, Cai Q, Huang Q, Li R, Tabata S, Cheng S, Zhang S, Zhang S, Huang S, Sato S, Sun S, Kwon SJ, Choi SR, Lee TH, Fan W, Zhao X, Tan X, Xu X, Wang Y, Qiu Y, Yin Y, Li Y, Du Y, Liao Y, Lim Y, Narusaka Y, Wang Y, Wang Z, Li Z, Wang Z, Xiong Z, Zhang Z; Brassica rapa Genome Sequencing Project Consortium.

Nat Genet. 2011 Aug 28;43(10):1035-9. doi: 10.1038/ng.919.

PMID:
21873998
25.

Qualitative and quantitative resistances to leaf rust finely mapped within two nucleotide-binding site leucine-rich repeat (NBS-LRR)-rich genomic regions of chromosome 19 in poplar.

Bresson A, Jorge V, Dowkiw A, Guerin V, Bourgait I, Tuskan GA, Schmutz J, Chalhoub B, Bastien C, Faivre Rampant P.

New Phytol. 2011 Oct;192(1):151-63. doi: 10.1111/j.1469-8137.2011.03786.x. Epub 2011 Jun 10.

26.

Alteration in expression of hormone-related genes in wild emmer wheat roots associated with drought adaptation mechanisms.

Krugman T, Peleg Z, Quansah L, Chagué V, Korol AB, Nevo E, Saranga Y, Fait A, Chalhoub B, Fahima T.

Funct Integr Genomics. 2011 Dec;11(4):565-83. doi: 10.1007/s10142-011-0231-6. Epub 2011 Jun 8.

PMID:
21656015
27.

The impact of Ty3-gypsy group LTR retrotransposons Fatima on B-genome specificity of polyploid wheats.

Salina EA, Sergeeva EM, Adonina IG, Shcherban AB, Belcram H, Huneau C, Chalhoub B.

BMC Plant Biol. 2011 Jun 3;11:99. doi: 10.1186/1471-2229-11-99.

28.

The Ma gene for complete-spectrum resistance to Meloidogyne species in Prunus is a TNL with a huge repeated C-terminal post-LRR region.

Claverie M, Dirlewanger E, Bosselut N, Van Ghelder C, Voisin R, Kleinhentz M, Lafargue B, Abad P, Rosso MN, Chalhoub B, Esmenjaud D.

Plant Physiol. 2011 Jun;156(2):779-92. doi: 10.1104/pp.111.176230. Epub 2011 Apr 11.

29.

Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids.

Chagué V, Just J, Mestiri I, Balzergue S, Tanguy AM, Huneau C, Huteau V, Belcram H, Coriton O, Jahier J, Chalhoub B.

New Phytol. 2010 Sep;187(4):1181-94. doi: 10.1111/j.1469-8137.2010.03339.x. Epub 2010 Jun 25.

30.

Evolutionary analysis of the CACTA DNA-transposon Caspar across wheat species using sequence comparison and in situ hybridization.

Sergeeva EM, Salina EA, Adonina IG, Chalhoub B.

Mol Genet Genomics. 2010 Jul;284(1):11-23. doi: 10.1007/s00438-010-0544-5. Epub 2010 May 29.

PMID:
20512353
31.

Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat.

Krugman T, Chagué V, Peleg Z, Balzergue S, Just J, Korol AB, Nevo E, Saranga Y, Chalhoub B, Fahima T.

Funct Integr Genomics. 2010 May;10(2):167-86. doi: 10.1007/s10142-010-0166-3. Epub 2010 Mar 24.

PMID:
20333536
32.

Wet laboratory tools widely used in plant genomics.

Budak H, Zhang H, Gupta PK, Chalhoub B, James A, Liu C.

Int J Plant Genomics. 2009;2009:321975. doi: 10.1155/2009/321975. Epub 2010 Feb 22. No abstract available.

33.

Newly synthesized wheat allohexaploids display progenitor-dependent meiotic stability and aneuploidy but structural genomic additivity.

Mestiri I, Chagué V, Tanguy AM, Huneau C, Huteau V, Belcram H, Coriton O, Chalhoub B, Jahier J.

New Phytol. 2010 Apr;186(1):86-101. doi: 10.1111/j.1469-8137.2010.03186.x. Epub 2010 Feb 10.

34.

The first meiosis of resynthesized Brassica napus, a genome blender.

Szadkowski E, Eber F, Huteau V, Lodé M, Huneau C, Belcram H, Coriton O, Manzanares-Dauleux MJ, Delourme R, King GJ, Chalhoub B, Jenczewski E, Chèvre AM.

New Phytol. 2010 Apr;186(1):102-12. doi: 10.1111/j.1469-8137.2010.03182.x. Epub 2010 Feb 8.

35.

Impact of transposable elements on the organization and function of allopolyploid genomes.

Parisod C, Alix K, Just J, Petit M, Sarilar V, Mhiri C, Ainouche M, Chalhoub B, Grandbastien MA.

New Phytol. 2010 Apr;186(1):37-45. doi: 10.1111/j.1469-8137.2009.03096.x. Epub 2009 Dec 7. Review.

36.

Brassica orthologs from BANYULS belong to a small multigene family, which is involved in procyanidin accumulation in the seed.

Auger B, Baron C, Lucas MO, Vautrin S, Bergès H, Chalhoub B, Fautrel A, Renard M, Nesi N.

Planta. 2009 Nov;230(6):1167-83. doi: 10.1007/s00425-009-1017-0. Epub 2009 Sep 17.

37.

Isolation and sequence analysis of the wheat B genome subtelomeric DNA.

Salina EA, Sergeeva EM, Adonina IG, Shcherban AB, Afonnikov DA, Belcram H, Huneau C, Chalhoub B.

BMC Genomics. 2009 Sep 5;10:414. doi: 10.1186/1471-2164-10-414.

38.

Sixty million years in evolution of soft grain trait in grasses: emergence of the softness locus in the common ancestor of Pooideae and Ehrhartoideae, after their divergence from Panicoideae.

Charles M, Tang H, Belcram H, Paterson A, Gornicki P, Chalhoub B.

Mol Biol Evol. 2009 Jul;26(7):1651-61. doi: 10.1093/molbev/msp076. Epub 2009 Apr 24.

PMID:
19395588
39.

New insights into the origin of the B genome of hexaploid wheat: evolutionary relationships at the SPA genomic region with the S genome of the diploid relative Aegilops speltoides.

Salse J, Chagué V, Bolot S, Magdelenat G, Huneau C, Pont C, Belcram H, Couloux A, Gardais S, Evrard A, Segurens B, Charles M, Ravel C, Samain S, Charmet G, Boudet N, Chalhoub B.

BMC Genomics. 2008 Nov 25;9:555. doi: 10.1186/1471-2164-9-555.

40.

Dynamics and differential proliferation of transposable elements during the evolution of the B and A genomes of wheat.

Charles M, Belcram H, Just J, Huneau C, Viollet A, Couloux A, Segurens B, Carter M, Huteau V, Coriton O, Appels R, Samain S, Chalhoub B.

Genetics. 2008 Oct;180(2):1071-86. doi: 10.1534/genetics.108.092304. Epub 2008 Sep 9.

41.

Acc homoeoloci and the evolution of wheat genomes.

Chalupska D, Lee HY, Faris JD, Evrard A, Chalhoub B, Haselkorn R, Gornicki P.

Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9691-6. doi: 10.1073/pnas.0803981105. Epub 2008 Jul 3.

42.

Contrasted microcolinearity and gene evolution within a homoeologous region of wheat and barley species.

Chantret N, Salse J, Sabot F, Bellec A, Laubin B, Dubois I, Dossat C, Sourdille P, Joudrier P, Gautier MF, Cattolico L, Beckert M, Aubourg S, Weissenbach J, Caboche M, Leroy P, Bernard M, Chalhoub B.

J Mol Evol. 2008 Feb;66(2):138-50. doi: 10.1007/s00239-008-9066-8. Epub 2008 Feb 15.

PMID:
18274696
43.

Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV.

Hein I, McLean K, Chalhoub B, Bryan GJ.

Int J Plant Genomics. 2007;2007:51421. doi: 10.1155/2007/51421.

44.

A unified classification system for eukaryotic transposable elements.

Wicker T, Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell A, Leroy P, Morgante M, Panaud O, Paux E, SanMiguel P, Schulman AH.

Nat Rev Genet. 2007 Dec;8(12):973-82. Review.

PMID:
17984973
45.

[Pseudoaneurysm of the abdominal aorta due to retroperitoneal lymph nodes, diagnosed by Doppler ultrasound and treated by embolization].

Hachem K, Bleibel L, Chalhoub B, Smayra T, Slaba S, Ghossain M.

J Mal Vasc. 2006 Dec;31(5):287-91. French.

PMID:
17202983
46.

Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids.

Nicolas SD, Le Mignon G, Eber F, Coriton O, Monod H, Clouet V, Huteau V, Lostanlen A, Delourme R, Chalhoub B, Ryder CD, Chèvre AM, Jenczewski E.

Genetics. 2007 Feb;175(2):487-503. Epub 2006 Dec 6.

47.
48.

Single-nucleotide polymorphism frequency in a set of selected lines of bread wheat (Triticum aestivum L.).

Ravel C, Praud S, Murigneux A, Canaguier A, Sapet F, Samson D, Balfourier F, Dufour P, Chalhoub B, Brunel D, Beckert M, Charmet G.

Genome. 2006 Sep;49(9):1131-9.

PMID:
17110993
49.

Types and rates of sequence evolution at the high-molecular-weight glutenin locus in hexaploid wheat and its ancestral genomes.

Gu YQ, Salse J, Coleman-Derr D, Dupin A, Crossman C, Lazo GR, Huo N, Belcram H, Ravel C, Charmet G, Charles M, Anderson OD, Chalhoub B.

Genetics. 2006 Nov;174(3):1493-504. Epub 2006 Oct 8.

50.

Advanced resources for plant genomics: a BAC library specific for the short arm of wheat chromosome 1B.

Janda J, Safár J, Kubaláková M, Bartos J, Kovárová P, Suchánková P, Pateyron S, Cíhalíková J, Sourdille P, Simková H, Faivre-Rampant P, Hribová E, Bernard M, Lukaszewski A, Dolezel J, Chalhoub B.

Plant J. 2006 Sep;47(6):977-86. Epub 2006 Aug 15.

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