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Not being heard: barriers to high quality unplanned hospital care during young people's transition to adult services - evidence from 'this sickle cell life' research.

Renedo A, Miles S, Chakravorty S, Leigh A, Telfer P, Warner JO, Marston C.

BMC Health Serv Res. 2019 Nov 21;19(1):876. doi: 10.1186/s12913-019-4726-5.


Sleep disturbances in early alcohol recovery: Prevalence and associations with clinical characteristics and severity of alcohol consumption.

Kolla BP, Mansukhani MP, Biernacka J, Chakravorty S, Karpyak VM.

Drug Alcohol Depend. 2019 Nov 5:107655. doi: 10.1016/j.drugalcdep.2019.107655. [Epub ahead of print]


Automatic identification of individual rpoB gene mutations responsible for rifampin resistance in Mycobacterium tuberculosis using melting temperature signatures generated by the Xpert® MTB/RIF Ultra* assay.

Cao Y, Parmar H, Simmons AM, Kale D, Tong K, Lieu D, Persing D, Kwiatkowski R, Alland D, Chakravorty S.

J Clin Microbiol. 2019 Sep 18. pii: JCM.00907-19. doi: 10.1128/JCM.00907-19. [Epub ahead of print]


Antenatal screening for haemoglobinopathies: current status, barriers and ethics.

Chakravorty S, Dick MC.

Br J Haematol. 2019 Nov;187(4):431-440. doi: 10.1111/bjh.16188. Epub 2019 Sep 11. Review.


Integrated Pan-Cancer Map of EBV-Associated Neoplasms Reveals Functional Host-Virus Interactions.

Chakravorty S, Yan B, Wang C, Wang L, Quaid JT, Lin CF, Briggs SD, Majumder J, Canaria DA, Chauss D, Chopra G, Olson MR, Zhao B, Afzali B, Kazemian M.

Cancer Res. 2019 Dec 1;79(23):6010-6023. doi: 10.1158/0008-5472.CAN-19-0615. Epub 2019 Sep 3.


Uttar Pradesh Association of Physicians of India Position Statement: Betel Quid (Paan) and Diabetes.

Balhara YPS, Kalra S, Bajaj S, Kuppili PP, Himanshu D, Atam V, Usman K, Singh V, Usman K, Singh V, Chaudhary SC, Chakravorty S, Wakhlu A, Fatma J, Tandon S, Maheshwari A, Gupta A, Parvez A, Chakravarty J, Chaudhary RR, Singh AK, Sawlani KK, Mathur M, Soni NK, Gupta OK, Gupta M, Agarwal S.

J Assoc Physicians India. 2018 Dec;66(12):11-12.


Labour room violence in Uttar Pradesh, India: evidence from longitudinal study of pregnancy and childbirth.

Goli S, Ganguly D, Chakravorty S, Siddiqui MZ, Ram H, Rammohan A, Acharya SS.

BMJ Open. 2019 Jul 1;9(7):e028688. doi: 10.1136/bmjopen-2018-028688.


Alcohol and sleep-related problems.

He S, Hasler BP, Chakravorty S.

Curr Opin Psychol. 2019 Dec;30:117-122. doi: 10.1016/j.copsyc.2019.03.007. Epub 2019 Apr 19. Review.


The Relationship between Alcohol Craving and Insomnia Symptoms in Alcohol-Dependent Individuals.

He S, Brooks AT, Kampman KM, Chakravorty S.

Alcohol Alcohol. 2019 May 1;54(3):287-294. doi: 10.1093/alcalc/agz029.


Clinical utility of RNA sequencing to resolve unusual GNE myopathy with a novel promoter deletion.

Chakravorty S, Berger K, Arafat D, Nallamilli BRR, Subramanian HP, Joseph S, Anderson ME, Campbell KP, Glass J, Gibson G, Hegde M.

Muscle Nerve. 2019 Jul;60(1):98-103. doi: 10.1002/mus.26486. Epub 2019 Apr 29.


Cognitive Behavioral Therapy for Insomnia in Alcohol-Dependent Veterans: A Randomized, Controlled Pilot Study.

Chakravorty S, Morales KH, Arnedt JT, Perlis ML, Oslin DW, Findley JC, Kranzler HR.

Alcohol Clin Exp Res. 2019 Jun;43(6):1244-1253. doi: 10.1111/acer.14030. Epub 2019 Apr 29.


World health status 1950-2015: Converging or diverging.

Goli S, Moradhvaj, Chakravorty S, Rammohan A.

PLoS One. 2019 Mar 19;14(3):e0213139. doi: 10.1371/journal.pone.0213139. eCollection 2019.


Index of Pain Experience in Sickle Cell Anaemia (IPESCA): development from daily pain diaries and initial findings from use with children and adults with sickle cell anaemia.

Kawadler JM, Slee A, Stotesbury H, Koelbel M, Balfour P, Saunders DE, Rees D, Howard J, Inusa B, Pelidis M, Kesse-Adu R, Chakravorty S, Awogbade M, Clark CA, Kirkham FJ, Liossi C.

Br J Haematol. 2019 Jul;186(2):360-363. doi: 10.1111/bjh.15841. Epub 2019 Mar 5. No abstract available.


Driving After Drinking Alcohol Associated with Insufficient Sleep and Insomnia among Student Athletes and Non-Athletes.

Bastien CH, Ellis JG, Athey A, Chakravorty S, Robbins R, Knowlden AP, Charest J, Grandner MA.

Brain Sci. 2019 Feb 20;9(2). pii: E46. doi: 10.3390/brainsci9020046.


Universal fluorescent sensors of high-affinity iron transport, applied to ESKAPE pathogens.

Chakravorty S, Shipelskiy Y, Kumar A, Majumdar A, Yang T, Nairn BL, Newton SM, Klebba PE.

J Biol Chem. 2019 Mar 22;294(12):4682-4692. doi: 10.1074/jbc.RA118.006921. Epub 2019 Jan 24.


Effectiveness of hydroxycarbamide in children with sickle cell disease - Analysis of dose-response metrics in a large birth cohort in a tertiary sickle cell centre.

Park H, Bhatti S, Chakravorty S.

Pediatr Blood Cancer. 2019 Jul;66(7):e27615. doi: 10.1002/pbc.27615. Epub 2019 Jan 21.


Genetic landscape and novel disease mechanisms from a large LGMD cohort of 4656 patients.

Nallamilli BRR, Chakravorty S, Kesari A, Tanner A, Ankala A, Schneider T, da Silva C, Beadling R, Alexander JJ, Askree SH, Whitt Z, Bean L, Collins C, Khadilkar S, Gaitonde P, Dastur R, Wicklund M, Mozaffar T, Harms M, Rufibach L, Mittal P, Hegde M.

Ann Clin Transl Neurol. 2018 Dec 1;5(12):1574-1587. doi: 10.1002/acn3.649. eCollection 2018 Dec.


Online cognitive behavioral therapy for insomnia (CBT-I) for the treatment of insomnia among individuals with alcohol use disorder: study protocol for a randomized controlled trial.

Brooks AT, Tuason RT, Chakravorty S, Raju S, Ritterband LM, Thorndike FP, Wallen GR.

Pilot Feasibility Stud. 2018 Dec 10;4:183. doi: 10.1186/s40814-018-0376-3. eCollection 2018.


The Impact of the Patient-Centered Medical Home on Asthma-Related Visits to the Emergency Room: A Fixed Effects Regression Approach.

Chakravorty S, Knapp CA.

Matern Child Health J. 2019 Mar;23(3):369-376. doi: 10.1007/s10995-018-2661-4.


Echocardiography in Congenital Heart Disease.

Mcleod G, Shum K, Gupta T, Chakravorty S, Kachur S, Bienvenu L, White M, Shah SB.

Prog Cardiovasc Dis. 2018 Nov - Dec;61(5-6):468-475. doi: 10.1016/j.pcad.2018.11.004. Epub 2018 Nov 13. Review.


A randomized, double-blind trial of amorolfine 0.25% cream and sertaconazole 2% cream in limited dermatophytosis.

Das A, Sil A, Sarkar TK, Sen A, Chakravorty S, Sengupta M, Das A, Chandra S, Pal S, Bandyopadhyay D, Das NK.

Indian J Dermatol Venereol Leprol. 2019 May-Jun;85(3):276-281. doi: 10.4103/ijdvl.IJDVL_907_17.


High body mass index in children with sickle cell disease: a retrospective single-centre audit.

Hall R, Gardner K, Rees DC, Chakravorty S.

BMJ Paediatr Open. 2018 Oct 23;2(1):e000302. doi: 10.1136/bmjpo-2018-000302. eCollection 2018.


Development of a High-Throughput Cul3-Keap1 Time-Resolved Fluorescence Resonance Energy Transfer (TR-FRET) Assay for Identifying Nrf2 Activators.

Poore DD, Hofmann G, Wolfe LA 3rd, Qi H, Jiang M, Fischer M, Wu Z, Sweitzer TD, Chakravorty S, Donovan B, Li H.

SLAS Discov. 2019 Feb;24(2):175-189. doi: 10.1177/2472555218807698. Epub 2018 Nov 1.


Circadian Pattern of Deaths Due to Suicide in Intoxicated Alcohol-Dependent Individuals.

Chakravorty S, Smith RV, Perlis ML, Grandner MA, Kranzler HR.

J Clin Psychiatry. 2018 Oct 23;79(6). pii: 17m11800. doi: 10.4088/JCP.17m11800.


A gain of function variant in PIEZO1 (E756del) and sickle cell disease.

Rooks H, Brewin J, Gardner K, Chakravorty S, Menzel S, Hannemann A, Gibson J, Rees DC.

Haematologica. 2019 Mar;104(3):e91-e93. doi: 10.3324/haematol.2018.202697. Epub 2018 Sep 20. No abstract available.


Bacterial Factors That Predict Relapse after Tuberculosis Therapy.

Colangeli R, Jedrey H, Kim S, Connell R, Ma S, Chippada Venkata UD, Chakravorty S, Gupta A, Sizemore EE, Diem L, Sherman DR, Okwera A, Dietze R, Boom WH, Johnson JL, Mac Kenzie WR, Alland D; DMID 01-009/Tuberculosis Trials Consortium Study 22 Teams.

N Engl J Med. 2018 Aug 30;379(9):823-833. doi: 10.1056/NEJMoa1715849.


Patient-reported experience measure in sickle cell disease.

Chakravorty S, Tallett A, Witwicki C, Hay H, Mkandawire C, Ogundipe A, Ojeer P, Whitaker A, Thompson J, Sizmur S, Sathyamoorthy G, Warner JO.

Arch Dis Child. 2018 Dec;103(12):1104-1109. doi: 10.1136/archdischild-2018-314955. Epub 2018 Aug 4.


The impact of alcohol on breathing parameters during sleep: A systematic review and meta-analysis.

Kolla BP, Foroughi M, Saeidifard F, Chakravorty S, Wang Z, Mansukhani MP.

Sleep Med Rev. 2018 Dec;42:59-67. doi: 10.1016/j.smrv.2018.05.007. Epub 2018 Jun 11.


Sleep Management Among Patients with Substance Use Disorders.

Chakravorty S, Vandrey RG, He S, Stein MD.

Med Clin North Am. 2018 Jul;102(4):733-743. doi: 10.1016/j.mcna.2018.02.012. Review.


Characteristics of Obstructive Sleep Apnea Across the Spectrum of Glucose Tolerance in Obese Adolescents.

Hannon TS, Watson SE, Jalou HE, Chakravorty S, Mather KJ, Arslanian SA.

Front Endocrinol (Lausanne). 2018 Jun 1;9:281. doi: 10.3389/fendo.2018.00281. eCollection 2018.


Is family history of alcohol dependence a risk factor for disturbed sleep in alcohol dependent subjects?

Chakravorty S, Chaudhary NS, Morales K, Grandner MA, Oslin DW.

Drug Alcohol Depend. 2018 Jul 1;188:311-317. doi: 10.1016/j.drugalcdep.2018.04.017. Epub 2018 May 19.


White matter integrity and processing speed in sickle cell anemia.

Stotesbury H, Kirkham FJ, Kölbel M, Balfour P, Clayden JD, Sahota S, Sakaria S, Saunders DE, Howard J, Kesse-Adu R, Inusa B, Pelidis M, Chakravorty S, Rees DC, Awogbade M, Wilkey O, Layton M, Clark CA, Kawadler JM.

Neurology. 2018 Jun 5;90(23):e2042-e2050. doi: 10.1212/WNL.0000000000005644. Epub 2018 May 11.


Nuisance Compounds, PAINS Filters, and Dark Chemical Matter in the GSK HTS Collection.

Chakravorty SJ, Chan J, Greenwood MN, Popa-Burke I, Remlinger KS, Pickett SD, Green DVS, Fillmore MC, Dean TW, Luengo JI, Macarrón R.

SLAS Discov. 2018 Jul;23(6):532-545. doi: 10.1177/2472555218768497. Epub 2018 Apr 26.


Inferring the effect of genomic variation in the new era of genomics.

Chakravorty S, Hegde M.

Hum Mutat. 2018 Jun;39(6):756-773. doi: 10.1002/humu.23427. Epub 2018 Apr 22. Review.


Why West? Comparisons of clinical, genetic and molecular features of infants with and without spasms.

Berg AT, Chakravorty S, Koh S, Grinspan ZM, Shellhaas RA, Saneto RP, Wirrell EC, Coryell J, Chu CJ, Mytinger JR, Gaillard WD, Valencia I, Knupp KG, Loddenkemper T, Sullivan JE, Poduri A, Millichap JJ, Keator C, Wusthoff C, Ryan N, Dobyns WB, Hegde M.

PLoS One. 2018 Mar 8;13(3):e0193599. doi: 10.1371/journal.pone.0193599. eCollection 2018.


Overnight auto-adjusting continuous airway pressure + standard care compared with standard care alone in the prevention of morbidity in sickle cell disease phase II (POMS2b): study protocol for a randomised controlled trial.

Howard J, Slee AE, Skene S, Inusa B, Kawadler J, Downes M, Gavlak J, Koelbel M, Stotesbury H, Chorozoglou M, Tebbs S, Chakravorty S, Awogbade M, Rees DC, Gupta A, Murphy PB, Hart N, Sahota S, Nwosu C, Gwam M, Saunders D, Muthurangu V, Barber N, Ako E, Thein SL, Marshall M, Reading IC, Cheng MYE, Kirkham FJ, Liossi C.

Trials. 2018 Jan 22;19(1):55. doi: 10.1186/s13063-017-2419-0.


Uttar Pradesh Association of Physicians of India Position Statement: Tobacco Use and Metabolic Syndrome.

Balhara YPS, Kalra S, Bajaj S, Kuppili PP, Himanshu D, Atam V, Usman K, Singh V, Chaudhary SC, Chakravorty S, Wakhlu A, Fatma J, Tandon S, Maheshwari A, Gupta A, Parvez A, Chakravarty J, Chaudhary RR, Singh AK, Sawlani KK, Mathur M, Soni NK, Gupta OK, Rai M, Agarwal S.

J Assoc Physicians India. 2017 Dec;65(12):66-72.


De novo RNA-Seq based transcriptome analysis of Papiliotrema laurentii strain RY1 under nitrogen starvation.

Sarkar S, Chakravorty S, Mukherjee A, Bhattacharya D, Bhattacharya S, Gachhui R.

Gene. 2018 Mar 1;645:146-156. doi: 10.1016/j.gene.2017.12.014. Epub 2017 Dec 13.


Molecular Drug-Susceptibility Test for Tuberculosis.

Chakravorty S, Xie YL, Dorman SE.

N Engl J Med. 2017 Dec 14;377(24):2404. doi: 10.1056/NEJMc1714218. No abstract available.


Xpert MTB/RIF Ultra for detection of Mycobacterium tuberculosis and rifampicin resistance: a prospective multicentre diagnostic accuracy study.

Dorman SE, Schumacher SG, Alland D, Nabeta P, Armstrong DT, King B, Hall SL, Chakravorty S, Cirillo DM, Tukvadze N, Bablishvili N, Stevens W, Scott L, Rodrigues C, Kazi MI, Joloba M, Nakiyingi L, Nicol MP, Ghebrekristos Y, Anyango I, Murithi W, Dietze R, Lyrio Peres R, Skrahina A, Auchynka V, Chopra KK, Hanif M, Liu X, Yuan X, Boehme CC, Ellner JJ, Denkinger CM; study team.

Lancet Infect Dis. 2018 Jan;18(1):76-84. doi: 10.1016/S1473-3099(17)30691-6. Epub 2017 Nov 30. Erratum in: Lancet Infect Dis. 2018 Feb 21;:.


Are the risks of treatment to cure a child with severe sickle cell disease too high?

de Montalembert M, Brousse V, Chakravorty S, Pagliuca A, Porter J, Telfer P, Vora A, Rees DC.

BMJ. 2017 Nov 23;359:j5250. doi: 10.1136/bmj.j5250. No abstract available.


Clinical Utility of Transcriptome Sequencing: Toward a Better Diagnosis for Mendelian Disorders.

Chakravorty S, Hegde M.

Clin Chem. 2018 Jun;64(6):882-884. doi: 10.1373/clinchem.2017.276980. Epub 2017 Nov 2. No abstract available.


Evaluation of a Rapid Molecular Drug-Susceptibility Test for Tuberculosis.

Xie YL, Chakravorty S, Armstrong DT, Hall SL, Via LE, Song T, Yuan X, Mo X, Zhu H, Xu P, Gao Q, Lee M, Lee J, Smith LE, Chen RY, Joh JS, Cho Y, Liu X, Ruan X, Liang L, Dharan N, Cho SN, Barry CE 3rd, Ellner JJ, Dorman SE, Alland D.

N Engl J Med. 2017 Sep 14;377(11):1043-1054. doi: 10.1056/NEJMoa1614915.


The New Xpert MTB/RIF Ultra: Improving Detection of Mycobacterium tuberculosis and Resistance to Rifampin in an Assay Suitable for Point-of-Care Testing.

Chakravorty S, Simmons AM, Rowneki M, Parmar H, Cao Y, Ryan J, Banada PP, Deshpande S, Shenai S, Gall A, Glass J, Krieswirth B, Schumacher SG, Nabeta P, Tukvadze N, Rodrigues C, Skrahina A, Tagliani E, Cirillo DM, Davidow A, Denkinger CM, Persing D, Kwiatkowski R, Jones M, Alland D.

MBio. 2017 Aug 29;8(4). pii: e00812-17. doi: 10.1128/mBio.00812-17.


How I manage sickle cell patients with high transcranial doppler results.

Brewin J, Kaya B, Chakravorty S.

Br J Haematol. 2017 Nov;179(3):377-388. doi: 10.1111/bjh.14850. Epub 2017 Aug 2. Review.


The significance of inadequate transcranial Doppler studies in children with sickle cell disease.

Greenwood S, Deane C, Rees OL, Freedman B, Kumar S, Ben Ramadan N, Wilkinson S, Marais G, Lord J, Chakravorty S, Height SE, Gardner K, Rees DC.

PLoS One. 2017 Jul 25;12(7):e0181681. doi: 10.1371/journal.pone.0181681. eCollection 2017.


Insomnia in Primary Care: Misreported, Mishandled, and Just Plain Missed.

Grandner MA, Chakravorty S.

J Clin Sleep Med. 2017 Aug 15;13(8):937-939. doi: 10.5664/jcsm.6688. No abstract available.


Flightin maintains myofilament lattice organization required for optimal flight power and courtship song quality in Drosophila.

Chakravorty S, Tanner BCW, Foelber VL, Vu H, Rosenthal M, Ruiz T, Vigoreaux JO.

Proc Biol Sci. 2017 May 17;284(1854). pii: 20170431. doi: 10.1098/rspb.2017.0431.


Gene and Variant Annotation for Mendelian Disorders in the Era of Advanced Sequencing Technologies.

Chakravorty S, Hegde M.

Annu Rev Genomics Hum Genet. 2017 Aug 31;18:229-256. doi: 10.1146/annurev-genom-083115-022545. Epub 2017 Apr 17. Review.


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