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Sustained IFN-I stimulation impairs MAIT cell responses to bacteria by inducing IL-10 during chronic HIV-1 infection.

Tang X, Zhang S, Peng Q, Ling L, Shi H, Liu Y, Cheng L, Xu L, Cheng L, Chakrabarti LA, Chen Z, Wang H, Zhang Z.

Sci Adv. 2020 Feb 19;6(8):eaaz0374. doi: 10.1126/sciadv.aaz0374. eCollection 2020 Feb.


Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops.

Czechowska K, Lannigan J, Wang L, Arcidiacono J, Ashhurst TM, Barnard RM, Bauer S, Bispo C, Bonilla DL, Brinkman RR, Cabanski M, Chang HD, Chakrabarti L, Chojnowski G, Cotleur B, Degheidy H, Dela Cruz GV, Eck S, Elliott J, Errington R, Filby A, Gagnon D, Gardner R, Green C, Gregory M, Groves CJ, Hall C, Hammes F, Hedrick M, Hoffman R, Icha J, Ivaska J, Jenner DC, Jones D, Kerckhof FM, Kukat C, Lanham D, Leavesley S, Lee M, Lin-Gibson S, Litwin V, Liu Y, Molloy J, Moore JS, Müller S, Nedbal J, Niesner R, Nitta N, Ohlsson-Wilhelm B, Paul NE, Perfetto S, Portat Z, Props R, Radtke S, Rayanki R, Rieger A, Rogers S, Rubbens P, Salomon R, Schiemann M, Sharpe J, Sonder SU, Stewart JJ, Sun Y, Ulrich H, Van Isterdael G, Vitaliti A, van Vreden C, Weber M, Zimmermann J, Vacca G, Wallace P, Tárnok A.

Cytometry A. 2019 Jun;95(6):598-644. doi: 10.1002/cyto.a.23777. No abstract available.


A role for antibodies in natural HIV control.

Moris A, Pereira M, Chakrabarti L.

Curr Opin HIV AIDS. 2019 Jul;14(4):265-272. doi: 10.1097/COH.0000000000000554.


A comparison of the mitochondrial proteome and lipidome in the mouse and long-lived Pipistrelle bats.

Pollard AK, Ingram TL, Ortori CA, Shephard F, Brown M, Liddell S, Barrett DA, Chakrabarti L.

Aging (Albany NY). 2019 Mar 19;11(6):1664-1685. doi: 10.18632/aging.101861.


New Approaches to Tay-Sachs Disease Therapy.

Solovyeva VV, Shaimardanova AA, Chulpanova DS, Kitaeva KV, Chakrabarti L, Rizvanov AA.

Front Physiol. 2018 Nov 20;9:1663. doi: 10.3389/fphys.2018.01663. eCollection 2018. Review.


Amber suppression coupled with inducible surface display identifies cells with high recombinant protein productivity.

Chakrabarti L, Zhuang L, Roy G, Bowen MA, Dall'Acqua WF, Hawley-Nelson P, Marelli M.

Biotechnol Bioeng. 2019 Apr;116(4):793-804. doi: 10.1002/bit.26892. Epub 2019 Jan 18.


Mitochondrial membrane potential identifies cells with high recombinant protein productivity.

Chakrabarti L, Mathew A, Li L, Han S, Klover J, Albanetti T, Hawley-Nelson P.

J Immunol Methods. 2019 Jan;464:31-39. doi: 10.1016/j.jim.2018.10.007. Epub 2018 Oct 17.


Rapid and accurate analysis of stem cell-derived extracellular vesicles with super resolution microscopy and live imaging.

Nizamudeen Z, Markus R, Lodge R, Parmenter C, Platt M, Chakrabarti L, Sottile V.

Biochim Biophys Acta Mol Cell Res. 2018 Dec;1865(12):1891-1900. doi: 10.1016/j.bbamcr.2018.09.008. Epub 2018 Oct 2.


CCR5 Revisited: How Mechanisms of HIV Entry Govern AIDS Pathogenesis.

Brelot A, Chakrabarti LA.

J Mol Biol. 2018 Aug 17;430(17):2557-2589. doi: 10.1016/j.jmb.2018.06.027. Epub 2018 Jun 19. Review.


CD4+ T cell-mediated HLA class II cross-restriction in HIV controllers.

Galperin M, Farenc C, Mukhopadhyay M, Jayasinghe D, Decroos A, Benati D, Tan LL, Ciacchi L, Reid HH, Rossjohn J, Chakrabarti LA, Gras S.

Sci Immunol. 2018 Jun 8;3(24). pii: eaat0687. doi: 10.1126/sciimmunol.aat0687.


A High Frequency of HIV-Specific Circulating Follicular Helper T Cells Is Associated with Preserved Memory B Cell Responses in HIV Controllers.

Claireaux M, Galperin M, Benati D, Nouël A, Mukhopadhyay M, Klingler J, de Truchis P, Zucman D, Hendou S, Boufassa F, Moog C, Lambotte O, Chakrabarti LA.

mBio. 2018 May 8;9(3). pii: e00317-18. doi: 10.1128/mBio.00317-18.


Exposure to the ROCK inhibitor fasudil promotes gliogenesis of neural stem cells in vitro.

Nizamudeen ZA, Chakrabarti L, Sottile V.

Stem Cell Res. 2018 Apr;28:75-86. doi: 10.1016/j.scr.2018.02.001. Epub 2018 Feb 6.


DNA Vaccination by Electroporation Amplifies Broadly Cross-Restricted Public TCR Clonotypes Shared with HIV Controllers.

Mukhopadhyay M, Galperin M, Patgaonkar M, Vasan S, Ho DD, Nouël A, Claireaux M, Benati D, Lambotte O, Huang Y, Chakrabarti LA.

J Immunol. 2017 Nov 15;199(10):3437-3452. doi: 10.4049/jimmunol.1700953. Epub 2017 Oct 9.


Defining a role for hemoglobin in Parkinson's disease.

Freed J, Chakrabarti L.

NPJ Parkinsons Dis. 2016 Oct 20;2:16021. doi: 10.1038/npjparkd.2016.21. eCollection 2016. Review.


Elevated 5hmC levels characterize DNA of the cerebellum in Parkinson's disease.

Stöger R, Scaife PJ, Shephard F, Chakrabarti L.

NPJ Parkinsons Dis. 2017 Feb 1;3:6. doi: 10.1038/s41531-017-0007-3. eCollection 2017.


Mouse mitochondrial lipid composition is defined by age in brain and muscle.

Pollard AK, Ortori CA, Stöger R, Barrett DA, Chakrabarti L.

Aging (Albany NY). 2017 Mar 21;9(3):986-998. doi: 10.18632/aging.101204.


Proteomic profiling of mitochondria: what does it tell us about the ageing brain?

Ingram T, Chakrabarti L.

Aging (Albany NY). 2016 Dec 13;8(12):3161-3179. doi: 10.18632/aging.101131. Review.


Mitochondrial proteomic profiling reveals increased carbonic anhydrase II in aging and neurodegeneration.

Pollard A, Shephard F, Freed J, Liddell S, Chakrabarti L.

Aging (Albany NY). 2016 Oct 10;8(10):2425-2436. doi: 10.18632/aging.101064.


Mitochondrial Complex 1 Activity Measured by Spectrophotometry Is Reduced across All Brain Regions in Ageing and More Specifically in Neurodegeneration.

Pollard AK, Craig EL, Chakrabarti L.

PLoS One. 2016 Jun 22;11(6):e0157405. doi: 10.1371/journal.pone.0157405. eCollection 2016.


Analysis of Mitochondrial haemoglobin in Parkinson's disease brain.

Shephard F, Greville-Heygate O, Liddell S, Emes R, Chakrabarti L.

Mitochondrion. 2016 Jul;29:45-52. doi: 10.1016/j.mito.2016.05.001. Epub 2016 May 12.


Public T cell receptors confer high-avidity CD4 responses to HIV controllers.

Benati D, Galperin M, Lambotte O, Gras S, Lim A, Mukhopadhyay M, Nouël A, Campbell KA, Lemercier B, Claireaux M, Hendou S, Lechat P, de Truchis P, Boufassa F, Rossjohn J, Delfraissy JF, Arenzana-Seisdedos F, Chakrabarti LA.

J Clin Invest. 2016 Jun 1;126(6):2093-108. doi: 10.1172/JCI83792. Epub 2016 Apr 25.


TCR clonotypes: molecular determinants of T-cell efficacy against HIV.

Lissina A, Chakrabarti LA, Takiguchi M, Appay V.

Curr Opin Virol. 2016 Feb;16:77-85. doi: 10.1016/j.coviro.2016.01.017. Epub 2016 Feb 12. Review.


Combination of Id2 Knockdown Whole Tumor Cells and Checkpoint Blockade: A Potent Vaccine Strategy in a Mouse Neuroblastoma Model.

Chakrabarti L, Morgan C, Sandler AD.

PLoS One. 2015 Jun 16;10(6):e0129237. doi: 10.1371/journal.pone.0129237. eCollection 2015.


[IRIS: a paradoxical inflammatory reaction in patients treated simultaneously for tuberculosis and HIV].

Chakrabarti LA, Lortholary O.

Med Sci (Paris). 2015 Jan;31(1):53-9. doi: 10.1051/medsci/20153101013. Epub 2015 Feb 6. Review. French.


Gangliosides drive the tumor infiltration and function of myeloid-derived suppressor cells.

Wondimu A, Liu Y, Su Y, Bobb D, Ma JS, Chakrabarti L, Radoja S, Ladisch S.

Cancer Res. 2014 Oct 1;74(19):5449-57. doi: 10.1158/0008-5472.CAN-14-0927. Epub 2014 Aug 12.


Biomarkers of CD4+ T-cell activation as risk factors for tuberculosis-associated immune reconstitution inflammatory syndrome.

Chakrabarti LA, Boucherie C, Bugault F, Cumont MC, Roussillon C, Breton G, Patey O, Chêne G, Richert L, Lortholary O; ANRS 129 BKVIR-CYTOK STUDY GROUP.

AIDS. 2014 Jul 17;28(11):1593-602. doi: 10.1097/QAD.0000000000000311.


A mechanism linking Id2-TGFβ crosstalk to reversible adaptive plasticity in neuroblastoma.

Chakrabarti L, Wang BD, Lee NH, Sandler AD.

PLoS One. 2013 Dec 23;8(12):e83521. doi: 10.1371/journal.pone.0083521. eCollection 2013.


A mitochondrial location for haemoglobins--dynamic distribution in ageing and Parkinson's disease.

Shephard F, Greville-Heygate O, Marsh O, Anderson S, Chakrabarti L.

Mitochondrion. 2014 Jan;14(1):64-72. doi: 10.1016/j.mito.2013.12.001. Epub 2013 Dec 10.


Pressure from TRIM5α contributes to control of HIV-1 replication by individuals expressing protective HLA-B alleles.

Granier C, Battivelli E, Lécuroux C, Venet A, Lambotte O, Schmitt-Boulanger M, Delaugerre C, Molina JM, Chakrabarti LA, Clavel F, Hance AJ.

J Virol. 2013 Sep;87(18):10368-80. doi: 10.1128/JVI.01313-13. Epub 2013 Jul 17.


Altered responses to homeostatic cytokines in patients with idiopathic CD4 lymphocytopenia.

Bugault F, Benati D, Mouthon L, Landires I, Rohrlich P, Pestre V, Thèze J, Lortholary O, Chakrabarti LA.

PLoS One. 2013;8(1):e55570. doi: 10.1371/journal.pone.0055570. Epub 2013 Jan 30.


Reversible adaptive plasticity: a mechanism for neuroblastoma cell heterogeneity and chemo-resistance.

Chakrabarti L, Abou-Antoun T, Vukmanovic S, Sandler AD.

Front Oncol. 2012 Aug 2;2:82. doi: 10.3389/fonc.2012.00082. eCollection 2012.


HIV controllers maintain a population of highly efficient Th1 effector cells in contrast to patients treated in the long term.

Vingert B, Benati D, Lambotte O, de Truchis P, Slama L, Jeannin P, Galperin M, Perez-Patrigeon S, Boufassa F, Kwok WW, Lemaître F, Delfraissy JF, Thèze J, Chakrabarti LA.

J Virol. 2012 Oct;86(19):10661-74. doi: 10.1128/JVI.00056-12. Epub 2012 Jul 25.


[Role of CD4 lymphocytes in the efficient immune response of HIV controllers].

Thèze J, Chakrabarti L, Vingert B, Lambotte O, Delfraissy JF.

Bull Acad Natl Med. 2011 Mar;195(3):545-57; discussion 557-9. French.


Dysfunctional hippocampal inhibition in the Ts65Dn mouse model of Down syndrome.

Best TK, Cramer NP, Chakrabarti L, Haydar TF, Galdzicki Z.

Exp Neurol. 2012 Feb;233(2):749-57. doi: 10.1016/j.expneurol.2011.11.033. Epub 2011 Dec 8.


Environmental enrichment rescues postnatal neurogenesis defect in the male and female Ts65Dn mouse model of Down syndrome.

Chakrabarti L, Scafidi J, Gallo V, Haydar TF.

Dev Neurosci. 2011;33(5):428-41. doi: 10.1159/000329423. Epub 2011 Aug 25.


HIV controllers: a multifactorial phenotype of spontaneous viral suppression.

Thèze J, Chakrabarti LA, Vingert B, Porichis F, Kaufmann DE.

Clin Immunol. 2011 Oct;141(1):15-30. doi: 10.1016/j.clim.2011.07.007. Epub 2011 Aug 4. Review.


HIV infection perturbs interleukin-7 signaling at the step of STAT5 nuclear relocalization.

Landires I, Bugault F, Lambotte O, de Truchis P, Slama L, Danckaert A, Delfraissy JF, Thèze J, Chakrabarti LA.

AIDS. 2011 Sep 24;25(15):1843-53. doi: 10.1097/QAD.0b013e32834a3678.


Immune mechanisms of HIV control.

Chakrabarti LA, Simon V.

Curr Opin Immunol. 2010 Aug;22(4):488-96. doi: 10.1016/j.coi.2010.06.006. Review.


Olig1 and Olig2 triplication causes developmental brain defects in Down syndrome.

Chakrabarti L, Best TK, Cramer NP, Carney RS, Isaac JT, Galdzicki Z, Haydar TF.

Nat Neurosci. 2010 Aug;13(8):927-34. doi: 10.1038/nn.2600. Epub 2010 Jul 18.


Mitochondrial dysfunction in NnaD mutant flies and Purkinje cell degeneration mice reveals a role for Nna proteins in neuronal bioenergetics.

Chakrabarti L, Zahra R, Jackson SM, Kazemi-Esfarjani P, Sopher BL, Mason AG, Toneff T, Ryu S, Shaffer S, Kansy JW, Eng J, Merrihew G, MacCoss MJ, Murphy A, Goodlett DR, Hook V, Bennett CL, Pallanck LJ, La Spada AR.

Neuron. 2010 Jun 24;66(6):835-47. doi: 10.1016/j.neuron.2010.05.024.


HIV controller CD4+ T cells respond to minimal amounts of Gag antigen due to high TCR avidity.

Vingert B, Perez-Patrigeon S, Jeannin P, Lambotte O, Boufassa F, Lemaître F, Kwok WW, Theodorou I, Delfraissy JF, Thèze J, Chakrabarti LA; ANRS EP36 HIV Controllers Study Group.

PLoS Pathog. 2010 Feb 26;6(2):e1000780. doi: 10.1371/journal.ppat.1000780.


Deletion of the Chd6 exon 12 affects motor coordination.

Lathrop MJ, Chakrabarti L, Eng J, Rhodes CH, Lutz T, Nieto A, Liggitt HD, Warner S, Fields J, Stöger R, Fiering S.

Mamm Genome. 2010 Apr;21(3-4):130-42. doi: 10.1007/s00335-010-9248-8. Epub 2010 Jan 29.


Idiopathic CD4+ T-cell lymphocytopenia is associated with impaired membrane expression of the chemokine receptor CXCR4.

Scott-Algara D, Balabanian K, Chakrabarti LA, Mouthon L, Dromer F, Didier C, Arenzana-Seisdedos F, Lortholary O.

Blood. 2010 May 6;115(18):3708-17. doi: 10.1182/blood-2009-02-202796. Epub 2009 Dec 28.


Dual mechanism of impairment of interleukin-7 (IL-7) responses in human immunodeficiency virus infection: decreased IL-7 binding and abnormal activation of the JAK/STAT5 pathway.

Juffroy O, Bugault F, Lambotte O, Landires I, Viard JP, Niel L, Fontanet A, Delfraissy JF, Thèze J, Chakrabarti LA.

J Virol. 2010 Jan;84(1):96-108. doi: 10.1128/JVI.01475-09.


Autophagy activation and enhanced mitophagy characterize the Purkinje cells of pcd mice prior to neuronal death.

Chakrabarti L, Eng J, Ivanov N, Garden GA, La Spada AR.

Mol Brain. 2009 Jul 29;2:24. doi: 10.1186/1756-6606-2-24.


HIV infection impairs CCR7-dependent T-cell chemotaxis independent of CCR7 expression.

Perez-Patrigeon S, Vingert B, Lambotte O, Viard JP, Delfraissy JF, Thèze J, Chakrabarti LA.

AIDS. 2009 Jun 19;23(10):1197-207. doi: 10.1097/QAD.0b013e32832c4b0a.


A programmed switch from IL-15- to IL-2-dependent activation in human NK cells.

Pillet AH, Bugault F, Thèze J, Chakrabarti LA, Rose T.

J Immunol. 2009 May 15;182(10):6267-77. doi: 10.4049/jimmunol.0801933.


The zinc-binding domain of Nna1 is required to prevent retinal photoreceptor loss and cerebellar ataxia in Purkinje cell degeneration (pcd) mice.

Chakrabarti L, Eng J, Martinez RA, Jackson S, Huang J, Possin DE, Sopher BL, La Spada AR.

Vision Res. 2008 Sep;48(19):1999-2005. doi: 10.1016/j.visres.2008.05.026. Epub 2008 Jul 26.


Preserved central memory and activated effector memory CD4+ T-cell subsets in human immunodeficiency virus controllers: an ANRS EP36 study.

Potter SJ, Lacabaratz C, Lambotte O, Perez-Patrigeon S, Vingert B, Sinet M, Colle JH, Urrutia A, Scott-Algara D, Boufassa F, Delfraissy JF, Thèze J, Venet A, Chakrabarti LA.

J Virol. 2007 Dec;81(24):13904-15. Epub 2007 Oct 10.

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