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The commensal Escherichia coli CEC15 reinforces intestinal defences in gnotobiotic mice and is protective in a chronic colitis mouse model.

Escribano-Vazquez U, Verstraeten S, Martin R, Chain F, Langella P, Thomas M, Cherbuy C.

Sci Rep. 2019 Aug 7;9(1):11431. doi: 10.1038/s41598-019-47611-9.


Oral delivery of pancreatitis-associated protein by Lactococcus lactis displays protective effects in dinitro-benzenesulfonic-acid-induced colitis model and is able to modulate the composition of the microbiota.

Breyner NM, Vilas Boas PB, Fernandes G, de Carvalho RD, Rochat T, Michel ML, Chain F, Sokol H, de Azevedo M, Myioshi A, Azevedo VA, Langella P, Bermúdez-Humarán LG, Chatel JM.

Environ Microbiol. 2019 Jul 19. doi: 10.1111/1462-2920.14748. [Epub ahead of print]


Genome-Wide Genotype-Expression Relationships Reveal Both Copy Number and Single Nucleotide Differentiation Contribute to Differential Gene Expression between Stickleback Ecotypes.

Huang Y, Feulner PGD, Eizaguirre C, Lenz TL, Bornberg-Bauer E, Milinski M, Reusch TBH, Chain FJJ.

Genome Biol Evol. 2019 Aug 1;11(8):2344-2359. doi: 10.1093/gbe/evz148.


Trends in DNA barcoding and metabarcoding.

Adamowicz SJ, Boatwright JS, Chain F, Fisher BL, Hogg ID, Leese F, Lijtmaer DA, Mwale M, Naaum AM, Pochon X, Steinke D, Wilson JJ, Wood S, Xu J, Xu S, Zhou X, van der Bank M.

Genome. 2019 Mar;62(3):v-viii. doi: 10.1139/gen-2019-0054. No abstract available.


The potential probiotic Lactobacillus rhamnosus CNCM I-3690 strain protects the intestinal barrier by stimulating both mucus production and cytoprotective response.

Martín R, Chamignon C, Mhedbi-Hajri N, Chain F, Derrien M, Escribano-Vázquez U, Garault P, Cotillard A, Pham HP, Chervaux C, Bermúdez-Humarán LG, Smokvina T, Langella P.

Sci Rep. 2019 Apr 1;9(1):5398. doi: 10.1038/s41598-019-41738-5.


Variation in transcriptional responses to copper exposure across Daphnia pulex lineages.

Chain FJJ, Finlayson S, Crease T, Cristescu M.

Aquat Toxicol. 2019 May;210:85-97. doi: 10.1016/j.aquatox.2019.02.016. Epub 2019 Feb 21.


A Putative Type V Pilus Contributes to Bacteroides thetaiotaomicron Biofilm Formation Capacity.

Mihajlovic J, Bechon N, Ivanova C, Chain F, Almeida A, Langella P, Beloin C, Ghigo JM.

J Bacteriol. 2019 Aug 22;201(18). pii: e00650-18. doi: 10.1128/JB.00650-18. Print 2019 Sep 15.


Anti-tumoral Effects of Recombinant Lactococcus lactis Strain Secreting IL-17A Cytokine.

Jacouton E, Torres Maravilla E, Boucard AS, Pouderous N, Pessoa Vilela AP, Naas I, Chain F, Azevedo V, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 23;9:3355. doi: 10.3389/fmicb.2018.03355. eCollection 2018.


Elucidating the Immune-Related Mechanisms by Which Probiotic Strain Lactobacillus casei BL23 Displays Anti-tumoral Properties.

Jacouton E, Michel ML, Torres-Maravilla E, Chain F, Langella P, Bermúdez-Humarán LG.

Front Microbiol. 2019 Jan 11;9:3281. doi: 10.3389/fmicb.2018.03281. eCollection 2018.


A New Bifidobacteria Expression SysTem (BEST) to Produce and Deliver Interleukin-10 in Bifidobacterium bifidum.

Mauras A, Chain F, Faucheux A, Ruffié P, Gontier S, Ryffel B, Butel MJ, Langella P, Bermúdez-Humarán LG, Waligora-Dupriet AJ.

Front Microbiol. 2018 Dec 21;9:3075. doi: 10.3389/fmicb.2018.03075. eCollection 2018.


Phosphatidylglycerols are induced by gut dysbiosis and inflammation, and favorably modulate adipose tissue remodeling in obesity.

Kayser BD, Lhomme M, Prifti E, Da Cunha C, Marquet F, Chain F, Naas I, Pelloux V, Dao MC, Kontush A, Rizkalla SW, Aron-Wisnewsky J, Bermúdez-Humarán LG, Oakley F, Langella P, Clément K, Dugail I.

FASEB J. 2019 Apr;33(4):4741-4754. doi: 10.1096/fj.201801897R. Epub 2019 Jan 4.


Accelerated rates of large-scale mutations in the presence of copper and nickel.

Chain FJJ, Flynn JM, Bull JK, Cristescu ME.

Genome Res. 2019 Jan;29(1):64-73. doi: 10.1101/gr.234724.118. Epub 2018 Nov 28.


Metabarcoding using multiplexed markers increases species detection in complex zooplankton communities.

Zhang GK, Chain FJJ, Abbott CL, Cristescu ME.

Evol Appl. 2018 Sep 15;11(10):1901-1914. doi: 10.1111/eva.12694. eCollection 2018 Dec.


Fitness and Genomic Consequences of Chronic Exposure to Low Levels of Copper and Nickel in Daphnia pulex Mutation Accumulation Lines.

Bull JK, Flynn JM, Chain FJJ, Cristescu ME.

G3 (Bethesda). 2019 Jan 9;9(1):61-71. doi: 10.1534/g3.118.200797.


Characterization of a Prophage-Free Derivative Strain of Lactococcus lactis ssp. lactis IL1403 Reveals the Importance of Prophages for Phenotypic Plasticity of the Host.

Aucouturier A, Chain F, Langella P, Bidnenko E.

Front Microbiol. 2018 Aug 31;9:2032. doi: 10.3389/fmicb.2018.02032. eCollection 2018.


Optimization and performance testing of a sequence processing pipeline applied to detection of nonindigenous species.

Scott R, Zhan A, Brown EA, Chain FJJ, Cristescu ME, Gras R, MacIsaac HJ.

Evol Appl. 2018 Feb 20;11(6):891-905. doi: 10.1111/eva.12604. eCollection 2018 Jul.


A Versatile New Model of Chemically Induced Chronic Colitis Using an Outbred Murine Strain.

Barone M, Chain F, Sokol H, Brigidi P, Bermúdez-Humarán LG, Langella P, Martín R.

Front Microbiol. 2018 Mar 27;9:565. doi: 10.3389/fmicb.2018.00565. eCollection 2018.


Probiotic Strain Lactobacillus casei BL23 Prevents Colitis-Associated Colorectal Cancer.

Jacouton E, Chain F, Sokol H, Langella P, Bermúdez-Humarán LG.

Front Immunol. 2017 Nov 17;8:1553. doi: 10.3389/fimmu.2017.01553. eCollection 2017.


Opposing effect of Lactobacillus on in vitro Klebsiella pneumoniae in biofilm and in an in vivo intestinal colonisation model.

Lagrafeuille R, Miquel S, Balestrino D, Vareille-Delarbre M, Chain F, Langella P, Forestier C.

Benef Microbes. 2018 Jan 29;9(1):87-100. doi: 10.3920/BM2017.0002. Epub 2017 Oct 12.


New Insights into the Diversity of the Genus Faecalibacterium.

Benevides L, Burman S, Martin R, Robert V, Thomas M, Miquel S, Chain F, Sokol H, Bermudez-Humaran LG, Morrison M, Langella P, Azevedo VA, Chatel JM, Soares S.

Front Microbiol. 2017 Sep 22;8:1790. doi: 10.3389/fmicb.2017.01790. eCollection 2017.


Using murine colitis models to analyze probiotics-host interactions.

Martín R, Chain F, Miquel S, Motta JP, Vergnolle N, Sokol H, Langella P.

FEMS Microbiol Rev. 2017 Aug 1;41(Supp_1):S49-S70. doi: 10.1093/femsre/fux035. Review.


Functional Characterization of Novel Faecalibacterium prausnitzii Strains Isolated from Healthy Volunteers: A Step Forward in the Use of F. prausnitzii as a Next-Generation Probiotic.

Martín R, Miquel S, Benevides L, Bridonneau C, Robert V, Hudault S, Chain F, Berteau O, Azevedo V, Chatel JM, Sokol H, Bermúdez-Humarán LG, Thomas M, Langella P.

Front Microbiol. 2017 Jun 30;8:1226. doi: 10.3389/fmicb.2017.01226. eCollection 2017.


Contribution of plasmid-encoded peptidase S8 (PrtP) to adhesion and transit in the gut of Lactococcus lactis IBB477 strain.

Radziwill-Bienkowska JM, Robert V, Drabot K, Chain F, Cherbuy C, Langella P, Thomas M, Bardowski JK, Mercier-Bonin M, Kowalczyk M.

Appl Microbiol Biotechnol. 2017 Jul;101(14):5709-5721. doi: 10.1007/s00253-017-8334-1. Epub 2017 May 24.


Beneficial effects on host energy metabolism of short-chain fatty acids and vitamins produced by commensal and probiotic bacteria.

LeBlanc JG, Chain F, Martín R, Bermúdez-Humarán LG, Courau S, Langella P.

Microb Cell Fact. 2017 May 8;16(1):79. doi: 10.1186/s12934-017-0691-z. Review.


Microbial Anti-Inflammatory Molecule (MAM) from Faecalibacterium prausnitzii Shows a Protective Effect on DNBS and DSS-Induced Colitis Model in Mice through Inhibition of NF-κB Pathway.

Breyner NM, Michon C, de Sousa CS, Vilas Boas PB, Chain F, Azevedo VA, Langella P, Chatel JM.

Front Microbiol. 2017 Feb 1;8:114. doi: 10.3389/fmicb.2017.00114. eCollection 2017.


A Cell-Penetrant Manganese Superoxide Dismutase (MnSOD) Mimic Is Able To Complement MnSOD and Exerts an Antiinflammatory Effect on Cellular and Animal Models of Inflammatory Bowel Diseases.

Mathieu E, Bernard AS, Delsuc N, Quévrain E, Gazzah G, Lai B, Chain F, Langella P, Bachelet M, Masliah J, Seksik P, Policar C.

Inorg Chem. 2017 Mar 6;56(5):2545-2555. doi: 10.1021/acs.inorgchem.6b02695. Epub 2017 Feb 15.


Erratum to: Protective effect of TSLP delivered at the gut mucosa level by recombinant lactic acid bacteria in DSS-induced colitis mouse model.

Aubry C, Michon C, Chain F, Chvatchko Y, Goffin L, Zimmerli SC, Leguin S, Langella P, Bermudez-Humaran L, Chatel JM.

Microb Cell Fact. 2016 Nov 10;15(1):188. No abstract available.


From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference.

Adamowicz SJ, Chain FJ, Clare EL, Deiner K, Dincă V, Elías-Gutiérrez M, Hausmann A, Hogg ID, Kekkonen M, Lijtmaer DA, Naaum A, Steinke D, Valdez-Moreno M, Van der Bank M, Wilson JJ, Xu J.

Genome. 2016 Nov;59(11):v-ix. No abstract available.


Effect of guaianolides in the meiosis reinitiation of amphibian oocytes.

Zapata-Martínez J, Sánchez-Toranzo G, Chaín F, Catalán CA, Bühler MI.

Zygote. 2017 Feb;25(1):10-16. doi: 10.1017/S0967199416000265. Epub 2016 Nov 3.


Spontaneous Mutation Accumulation in Daphnia pulex in Selection-Free vs. Competitive Environments.

Flynn JM, Chain FJ, Schoen DJ, Cristescu ME.

Mol Biol Evol. 2017 Jan;34(1):160-173. doi: 10.1093/molbev/msw234. Epub 2016 Oct 24.


From Barcodes to Biomes: Special Issues from the 6th International Barcode of Life Conference.

Adamowicz SJ, Chain FJ, Clare EL, Deiner K, Dincă V, Elías-Gutiérrez M, Hausmann A, Hogg ID, Kekkonen M, Lijtmaer DA, Naaum A, Steinke D, Valdez-Moreno M, Van der Bank M, Wilson JJ, Xu J.

Genome. 2016 Sep;59(9):v-ix. doi: 10.1139/gen-2016-0159. No abstract available.


The effects of parameter choice on defining molecular operational taxonomic units and resulting ecological analyses of metabarcoding data.

Clare EL, Chain FJ, Littlefair JE, Cristescu ME.

Genome. 2016 Nov;59(11):981-990. Epub 2016 Apr 13.


Bifidobacterium animalis ssp. lactis CNCM-I2494 Restores Gut Barrier Permeability in Chronically Low-Grade Inflamed Mice.

Martín R, Laval L, Chain F, Miquel S, Natividad J, Cherbuy C, Sokol H, Verdu EF, van Hylckama Vlieg J, Bermudez-Humaran LG, Smokvina T, Langella P.

Front Microbiol. 2016 May 6;7:608. doi: 10.3389/fmicb.2016.00608. eCollection 2016.


Evaluating the adaptive potential of the European eel: is the immunogenetic status recovering?

Baltazar-Soares M, Bracamonte SE, Bayer T, Chain FJ, Hanel R, Harrod C, Eizaguirre C.

PeerJ. 2016 Apr 11;4:e1868. doi: 10.7717/peerj.1868. eCollection 2016.


Lactobacillus casei BL23 regulates Treg and Th17 T-cell populations and reduces DMH-associated colorectal cancer.

Lenoir M, Del Carmen S, Cortes-Perez NG, Lozano-Ojalvo D, Muñoz-Provencio D, Chain F, Langella P, de Moreno de LeBlanc A, LeBlanc JG, Bermúdez-Humarán LG.

J Gastroenterol. 2016 Sep;51(9):862-73. doi: 10.1007/s00535-015-1158-9. Epub 2016 Jan 9.


Transcriptome profiling of immune tissues reveals habitat-specific gene expression between lake and river sticklebacks.

Huang Y, Chain FJ, Panchal M, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M, Feulner PG.

Mol Ecol. 2016 Feb;25(4):943-58. doi: 10.1111/mec.13520. Epub 2016 Feb 9.


Faecalibacterium prausnitzii A2-165 has a high capacity to induce IL-10 in human and murine dendritic cells and modulates T cell responses.

Rossi O, van Berkel LA, Chain F, Tanweer Khan M, Taverne N, Sokol H, Duncan SH, Flint HJ, Harmsen HJ, Langella P, Samsom JN, Wells JM.

Sci Rep. 2016 Jan 4;6:18507. doi: 10.1038/srep18507.


Lactic Acid Bacteria Isolated from Bovine Mammary Microbiota: Potential Allies against Bovine Mastitis.

Bouchard DS, Seridan B, Saraoui T, Rault L, Germon P, Gonzalez-Moreno C, Nader-Macias FM, Baud D, François P, Chuat V, Chain F, Langella P, Nicoli J, Le Loir Y, Even S.

PLoS One. 2015 Dec 29;10(12):e0144831. doi: 10.1371/journal.pone.0144831. eCollection 2015.


Protective effect of TSLP delivered at the gut mucosa level by recombinant lactic acid bacteria in DSS-induced colitis mouse model.

Aubry C, Michon C, Chain F, Chvatchenko Y, Goffin L, Zimmerli SC, Leguin S, Langella P, Bermudez-Humaran L, Chatel JM.

Microb Cell Fact. 2015 Nov 6;14:176. doi: 10.1186/s12934-015-0367-5. Erratum in: Microb Cell Fact. 2016 Nov 10;15(1):188.


Drying process strongly affects probiotics viability and functionalities.

Iaconelli C, Lemetais G, Kechaou N, Chain F, Bermúdez-Humarán LG, Langella P, Gervais P, Beney L.

J Biotechnol. 2015 Nov 20;214:17-26. doi: 10.1016/j.jbiotec.2015.08.022. Epub 2015 Aug 29.


Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation.

Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M.

PLoS Genet. 2015 Jul 30;11(7):e1005414. doi: 10.1371/journal.pgen.1005414. eCollection 2015 Jul. No abstract available.


Toward accurate molecular identification of species in complex environmental samples: testing the performance of sequence filtering and clustering methods.

Flynn JM, Brown EA, Chain FJ, MacIsaac HJ, Cristescu ME.

Ecol Evol. 2015 Jun;5(11):2252-66. doi: 10.1002/ece3.1497. Epub 2015 May 13.


Divergence thresholds and divergent biodiversity estimates: can metabarcoding reliably describe zooplankton communities?

Brown EA, Chain FJ, Crease TJ, MacIsaac HJ, Cristescu ME.

Ecol Evol. 2015 Jun;5(11):2234-51. doi: 10.1002/ece3.1485. Epub 2015 May 13.


Sex-Biased Expression of Young Genes in Silurana (Xenopus) tropicalis.

Chain FJ.

Cytogenet Genome Res. 2015;145(3-4):265-77. doi: 10.1159/000430942. Epub 2015 Jun 6.


Vibrational and structural study of onopordopicrin based on the FTIR spectrum and DFT calculations.

Chain FE, Romano E, Leyton P, Paipa C, Catalán CA, Fortuna M, Brandán SA.

Spectrochim Acta A Mol Biomol Spectrosc. 2015;150:381-9. doi: 10.1016/j.saa.2015.05.072. Epub 2015 May 29.


Identification of an anti-inflammatory protein from Faecalibacterium prausnitzii, a commensal bacterium deficient in Crohn's disease.

Quévrain E, Maubert MA, Michon C, Chain F, Marquant R, Tailhades J, Miquel S, Carlier L, Bermúdez-Humarán LG, Pigneur B, Lequin O, Kharrat P, Thomas G, Rainteau D, Aubry C, Breyner N, Afonso C, Lavielle S, Grill JP, Chassaing G, Chatel JM, Trugnan G, Xavier R, Langella P, Sokol H, Seksik P.

Gut. 2016 Mar;65(3):415-425. doi: 10.1136/gutjnl-2014-307649. Epub 2015 Jun 4.


Identification of metabolic signatures linked to anti-inflammatory effects of Faecalibacterium prausnitzii.

Miquel S, Leclerc M, Martin R, Chain F, Lenoir M, Raguideau S, Hudault S, Bridonneau C, Northen T, Bowen B, Bermúdez-Humarán LG, Sokol H, Thomas M, Langella P.

MBio. 2015 Apr 21;6(2). pii: e00300-15. doi: 10.1128/mBio.00300-15.


Faecalibacterium prausnitzii prevents physiological damages in a chronic low-grade inflammation murine model.

Martín R, Miquel S, Chain F, Natividad JM, Jury J, Lu J, Sokol H, Theodorou V, Bercik P, Verdu EF, Langella P, Bermúdez-Humarán LG.

BMC Microbiol. 2015 Mar 21;15:67. doi: 10.1186/s12866-015-0400-1.


Genomics of divergence along a continuum of parapatric population differentiation.

Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M.

PLoS Genet. 2015 Feb 13;11(2):e1004966. doi: 10.1371/journal.pgen.1004966. eCollection 2015 Feb. Erratum in: PLoS Genet. 2015 Jul;11(7):e1005414.


Lactobacillus rhamnosus CNCM I-3690 and the commensal bacterium Faecalibacterium prausnitzii A2-165 exhibit similar protective effects to induced barrier hyper-permeability in mice.

Laval L, Martin R, Natividad JN, Chain F, Miquel S, Desclée de Maredsous C, Capronnier S, Sokol H, Verdu EF, van Hylckama Vlieg JE, Bermúdez-Humarán LG, Smokvina T, Langella P.

Gut Microbes. 2015;6(1):1-9. doi: 10.4161/19490976.2014.990784. Epub 2015 Jan 14.

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