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Items: 17

1.

The functional convergence of antibiotic resistance in β-lactamases is not conferred by a simple convergent substitution of amino acid.

Keshri V, Arbuckle K, Chabrol O, Rolain JM, Raoult D, Pontarotti P.

Evol Appl. 2019 Jul 18;12(9):1812-1822. doi: 10.1111/eva.12835. eCollection 2019 Oct.

2.

An Integrative Database of β-Lactamase Enzymes: Sequences, Structures, Functions, and Phylogenetic Trees.

Keshri V, Diene SM, Estienne A, Dardaillon J, Chabrol O, Tichit L, Rolain JM, Raoult D, Pontarotti P.

Antimicrob Agents Chemother. 2019 Apr 25;63(5). pii: e02319-18. doi: 10.1128/AAC.02319-18. Print 2019 May.

3.

Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect.

Fritz S, Rajaonison A, Chabrol O, Raoult D, Rolain JM, Merhej V.

BMC Bioinformatics. 2018 Dec 3;19(1):463. doi: 10.1186/s12859-018-2479-5.

4.

A multispecies approach reveals hot spots and cold spots of diversity and connectivity in invertebrate species with contrasting dispersal modes.

Cahill AE, De Jode A, Dubois S, Bouzaza Z, Aurelle D, Boissin E, Chabrol O, David R, Egea E, Ledoux JB, Mérigot B, Weber AA, Chenuil A.

Mol Ecol. 2017 Dec;26(23):6563-6577. doi: 10.1111/mec.14389. Epub 2017 Nov 25.

PMID:
29087018
5.

Pithovirus sibericum, a new bona fide member of the "Fourth TRUC" club.

Sharma V, Colson P, Chabrol O, Pontarotti P, Raoult D.

Front Microbiol. 2015 Aug 4;6:722. doi: 10.3389/fmicb.2015.00722. eCollection 2015.

6.

Welcome to pandoraviruses at the 'Fourth TRUC' club.

Sharma V, Colson P, Chabrol O, Scheid P, Pontarotti P, Raoult D.

Front Microbiol. 2015 May 18;6:423. doi: 10.3389/fmicb.2015.00423. eCollection 2015.

7.

The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies.

Pratlong M, Haguenauer A, Chabrol O, Klopp C, Pontarotti P, Aurelle D.

Mol Ecol Resour. 2015 Sep;15(5):1205-15. doi: 10.1111/1755-0998.12383. Epub 2015 Feb 22.

PMID:
25648864
8.

Mycobacteriophage-drived diversification of Mycobacterium abscessus.

Sassi M, Gouret P, Chabrol O, Pontarotti P, Drancourt M.

Biol Direct. 2014 Sep 15;9:19. doi: 10.1186/1745-6150-9-19.

9.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

10.

To tree or not to tree? Genome-wide quantification of recombination and reticulate evolution during the diversification of strict intracellular bacteria.

Hernández-López A, Chabrol O, Royer-Carenzi M, Merhej V, Pontarotti P, Raoult D.

Genome Biol Evol. 2013;5(12):2305-17. doi: 10.1093/gbe/evt178.

11.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature. 2013 Aug 22;500(7463):453-7. doi: 10.1038/nature12326. Epub 2013 Jul 21.

12.

An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales.

Le PT, Ramulu HG, Guijarro L, Paganini J, Gouret P, Chabrol O, Raoult D, Pontarotti P.

BMC Evol Biol. 2012 Dec 12;12:243. doi: 10.1186/1471-2148-12-243.

13.

Oocyte-somatic cells interactions, lessons from evolution.

Charlier C, Montfort J, Chabrol O, Brisard D, Nguyen T, Le Cam A, Richard-Parpaillon L, Moreews F, Pontarotti P, Uzbekova S, Chesnel F, Bobe J.

BMC Genomics. 2012 Oct 19;13:560. doi: 10.1186/1471-2164-13-560.

14.

FunGene-DB: a web-based tool for Polyporales strains authentication.

Navarro D, Favel A, Chabrol O, Pontarotti P, Haon M, Lesage-Meessen L.

J Biotechnol. 2012 Oct 31;161(3):383-6. doi: 10.1016/j.jbiotec.2012.06.023. Epub 2012 Jul 2.

PMID:
22766416
15.

Amphioxus FGF signaling predicts the acquisition of vertebrate morphological traits.

Bertrand S, Camasses A, Somorjai I, Belgacem MR, Chabrol O, Escande ML, Pontarotti P, Escriva H.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9160-5. doi: 10.1073/pnas.1014235108. Epub 2011 May 12.

16.

Compound Poisson approximation and testing for gene clusters with multigene families.

Grusea S, Pardoux E, Chabrol O, Pontarotti P.

J Comput Biol. 2011 Apr;18(4):579-94. doi: 10.1089/cmb.2010.0043. Epub 2011 Mar 21.

PMID:
21417938
17.

CASSIOPE: an expert system for conserved regions searches.

Rascol VL, Levasseur A, Chabrol O, Grusea S, Gouret P, Danchin EG, Pontarotti P.

BMC Bioinformatics. 2009 Sep 10;10:284. doi: 10.1186/1471-2105-10-284.

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