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Pathogenic Mechanisms of Cryptosporidium and Giardia. Certad G et al. Trends Parasitol. (2017)

Gut Protozoa: Friends or Foes of the Human Gut Microbiota? Chabé M et al. Trends Parasitol. (2017)

High association of Cryptosporidium spp. infection with colon adenocarcinoma in Lebanese patients. Osman M et al. PLoS One. (2017)

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First Report on the Prevalence and Subtype Distribution of Blastocystis sp. in Edible Marine Fish and Marine Mammals: A Large Scale-Study Conducted in Atlantic Northeast and on the Coasts of Northern France.

Gantois N, Lamot A, Seesao Y, Creusy C, Li LL, Monchy S, Benamrouz-Vanneste S, Karpouzopoulos J, Bourgain JL, Rault C, Demaret F, Baydoun M, Chabé M, Fréalle E, Aliouat-Denis CM, Gay M, Certad G, Viscogliosi E.

Microorganisms. 2020 Mar 24;8(3). pii: E460. doi: 10.3390/microorganisms8030460.


Diversity and Complexity of the Large Surface Protein Family in the Compacted Genomes of Multiple Pneumocystis Species.

Ma L, Chen Z, Huang DW, Cissé OH, Rothenburger JL, Latinne A, Bishop L, Blair R, Brenchley JM, Chabé M, Deng X, Hirsch V, Keesler R, Kutty G, Liu Y, Margolis D, Morand S, Pahar B, Peng L, Van Rompay KKA, Song X, Song J, Sukura A, Thapar S, Wang H, Weissenbacher-Lang C, Xu J, Lee CH, Jardine C, Lempicki RA, Cushion MT, Cuomo CA, Kovacs JA.

mBio. 2020 Mar 3;11(2). pii: e02878-19. doi: 10.1128/mBio.02878-19.


The Impact of Bioinformatics Pipelines on Microbiota Studies: Does the Analytical "Microscope" Affect the Biological Interpretation?

Siegwald L, Caboche S, Even G, Viscogliosi E, Audebert C, Chabé M.

Microorganisms. 2019 Sep 26;7(10). pii: E393. doi: 10.3390/microorganisms7100393.


First report on the prevalence and subtype distribution of Blastocystis sp. in dairy cattle in Lebanon and assessment of zoonotic transmission.

Greige S, El Safadi D, Khaled S, Gantois N, Baydoun M, Chemaly M, Benamrouz-Vanneste S, Chabé M, Osman M, Certad G, Hamze M, Viscogliosi E.

Acta Trop. 2019 Jun;194:23-29. doi: 10.1016/j.actatropica.2019.02.013. Epub 2019 Mar 13.


Use of shotgun metagenomics for the identification of protozoa in the gut microbiota of healthy individuals from worldwide populations with various industrialization levels.

Lokmer A, Cian A, Froment A, Gantois N, Viscogliosi E, Chabé M, Ségurel L.

PLoS One. 2019 Feb 6;14(2):e0211139. doi: 10.1371/journal.pone.0211139. eCollection 2019.


Prevalence and subtype distribution of Blastocystis sp. isolates from poultry in Lebanon and evidence of zoonotic potential.

Greige S, El Safadi D, Bécu N, Gantois N, Pereira B, Chabé M, Benamrouz-Vanneste S, Certad G, El Hage R, Chemaly M, Hamze M, Viscogliosi E.

Parasit Vectors. 2018 Jul 4;11(1):389. doi: 10.1186/s13071-018-2975-5.


High association of Cryptosporidium spp. infection with colon adenocarcinoma in Lebanese patients.

Osman M, Benamrouz S, Guyot K, Baydoun M, Frealle E, Chabe M, Gantois N, Delaire B, Goffard A, Aoun A, Jurdi N, Dabboussi F, Even G, Slomianny C, Gosset P, Hamze M, Creusy C, Viscogliosi E, Certad G.

PLoS One. 2017 Dec 19;12(12):e0189422. doi: 10.1371/journal.pone.0189422. eCollection 2017.


Three-dimensional (3D) culture of adult murine colon as an in vitro model of cryptosporidiosis: Proof of concept.

Baydoun M, Vanneste SB, Creusy C, Guyot K, Gantois N, Chabe M, Delaire B, Mouray A, Baydoun A, Forzy G, Chieux V, Gosset P, Senez V, Viscogliosi E, Follet J, Certad G.

Sci Rep. 2017 Dec 11;7(1):17288. doi: 10.1038/s41598-017-17304-2.


Genetic diversity and evolution of Pneumocystis fungi infecting wild Southeast Asian murid rodents.

Latinne A, Bezé F, Delhaes L, Pottier M, Gantois N, Nguyen J, Blasdell K, Dei-Cas E, Morand S, Chabé M.

Parasitology. 2018 Jun;145(7):885-900. doi: 10.1017/S0031182017001883. Epub 2017 Nov 9.


Prevalence, transmission, and host specificity of Cryptosporidium spp. in various animal groups from two French zoos.

Osman M, El Safadi D, Benamrouz-Vanneste S, Cian A, Moriniere R, Gantois N, Delgado-Viscogliosi P, Guyot K, Bosc S, Chabé M, Petit T, Viscogliosi E, Certad G.

Parasitol Res. 2017 Dec;116(12):3419-3422. doi: 10.1007/s00436-017-5645-1. Epub 2017 Oct 13.


Gut Protozoa: Friends or Foes of the Human Gut Microbiota?

Chabé M, Lokmer A, Ségurel L.

Trends Parasitol. 2017 Dec;33(12):925-934. doi: 10.1016/ Epub 2017 Sep 1. Review.


Proteogenomic Insights into the Intestinal Parasite Blastocystis sp. Subtype 4 Isolate WR1.

Armengaud J, Pible O, Gaillard JC, Cian A, Gantois N, Tan KSW, Chabé M, Viscogliosi E.

Proteomics. 2017 Nov;17(21). doi: 10.1002/pmic.201700211. Epub 2017 Oct 16.


Targeted metagenomic sequencing data of human gut microbiota associated with Blastocystis colonization.

Siegwald L, Audebert C, Even G, Viscogliosi E, Caboche S, Chabé M.

Sci Data. 2017 Jun 27;4:170081. doi: 10.1038/sdata.2017.81.


Pathogenic Mechanisms of Cryptosporidium and Giardia.

Certad G, Viscogliosi E, Chabé M, Cacciò SM.

Trends Parasitol. 2017 Jul;33(7):561-576. doi: 10.1016/ Epub 2017 Mar 20. Review.


Molecular Epidemiology of Blastocystis sp. in Various Animal Groups from Two French Zoos and Evaluation of Potential Zoonotic Risk.

Cian A, El Safadi D, Osman M, Moriniere R, Gantois N, Benamrouz-Vanneste S, Delgado-Viscogliosi P, Guyot K, Li LL, Monchy S, Noël C, Poirier P, Nourrisson C, Wawrzyniak I, Delbac F, Bosc S, Chabé M, Petit T, Certad G, Viscogliosi E.

PLoS One. 2017 Jan 6;12(1):e0169659. doi: 10.1371/journal.pone.0169659. eCollection 2017.


High Prevalence of Pneumocystis jirovecii Dihydropteroate Synthase Gene Mutations in Patients with a First Episode of Pneumocystis Pneumonia in Santiago, Chile, and Clinical Response to Trimethoprim-Sulfamethoxazole Therapy.

Ponce CA, Chabé M, George C, Cárdenas A, Durán L, Guerrero J, Bustamante R, Matos O, Huang L, Miller RF, Vargas SL.

Antimicrob Agents Chemother. 2017 Jan 24;61(2). pii: e01290-16. doi: 10.1128/AAC.01290-16. Print 2017 Feb.


Diffusion of Pneumocystis jirovecii in the surrounding air of patients with Pneumocystis colonization: frequency and putative risk factors.

Fréalle E, Valade S, Guigue N, Hamane S, Chabé M, Le Gal S, Damiani C, Totet A, Aliouat EM, Nevez G, Menotti J.

Med Mycol. 2017 Jul 1;55(5):568-572. doi: 10.1093/mmy/myw113.


Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota.

Audebert C, Even G, Cian A; Blastocystis Investigation Group, Loywick A, Merlin S, Viscogliosi E, Chabé M.

Sci Rep. 2016 May 5;6:25255. doi: 10.1038/srep25255.


Relationship Between Pneumocystis carinii Burden and the Degree of Host Immunosuppression in an Airborne Transmission Experimental Model.

Khalife S, Chabé M, Gantois N, Audebert C, Pottier M, Hlais S, Pinçon C, Chassat T, Pierrot C, Khalife J, Aliouat-Denis CM, Aliouat el M.

J Eukaryot Microbiol. 2016 May;63(3):309-17. doi: 10.1111/jeu.12280. Epub 2015 Nov 24.


Draft genome sequence of the intestinal parasite Blastocystis subtype 4-isolate WR1.

Wawrzyniak I, Courtine D, Osman M, Hubans-Pierlot C, Cian A, Nourrisson C, Chabe M, Poirier P, Bart A, Polonais V, Delgado-Viscogliosi P, El Alaoui H, Belkorchia A, van Gool T, Tan KS, Ferreira S, Viscogliosi E, Delbac F.

Genom Data. 2015 Feb 2;4:22-3. doi: 10.1016/j.gdata.2015.01.009. eCollection 2015 Jun.


Complementation of a manganese-dependent superoxide dismutase-deficient yeast strain with Pneumocystis carinii sod2 gene.

Khalife S, Aliouat el M, Gantois N, Jakobczyk H, Demay F, Chabé M, Pottier M, Dabboussi F, Hamze M, Dei-Cas E, Standaert-Vitse A, Aliouat-Denis CM.

Fungal Biol. 2014 Nov;118(11):885-95. doi: 10.1016/j.funbio.2014.07.007. Epub 2014 Aug 11.


An improved single-round PCR leads to rapid and highly sensitive detection of Pneumocystis spp.

Chabé M, Khalife S, Gantois N, Even G, Audebert C.

Med Mycol. 2014 Nov;52(8):841-6. doi: 10.1093/mmy/myu032. Epub 2014 Jun 25.


Cryptosporidium parvum-induced ileo-caecal adenocarcinoma and Wnt signaling in a mouse model.

Benamrouz S, Conseil V, Chabé M, Praet M, Audebert C, Blervaque R, Guyot K, Gazzola S, Mouray A, Chassat T, Delaire B, Goetinck N, Gantois N, Osman M, Slomianny C, Dehennaut V, Lefebvre T, Viscogliosi E, Cuvelier C, Dei-Cas E, Creusy C, Certad G.

Dis Model Mech. 2014 Jun;7(6):693-700. doi: 10.1242/dmm.013292. Epub 2014 Mar 20.


Histoplasma capsulatum and Pneumocystis spp. co-infection in wild bats from Argentina, French Guyana, and Mexico.

González-González AE, Aliouat-Denis CM, Ramírez-Bárcenas JA, Demanche C, Pottier M, Carreto-Binaghi LE, Akbar H, Derouiche S, Chabé M, Aliouat el M, Dei-Cas E, Taylor ML.

BMC Microbiol. 2014 Feb 5;14:23. doi: 10.1186/1471-2180-14-23.


Aerially transmitted human fungal pathogens: what can we learn from metagenomics and comparative genomics?

Aliouat-Denis CM, Chabé M, Delhaes L, Dei-Cas E.

Rev Iberoam Micol. 2014 Jan-Mar;31(1):54-61. doi: 10.1016/j.riam.2013.10.006. Epub 2013 Nov 26. Review.


Growth and airborne transmission of cell-sorted life cycle stages of Pneumocystis carinii.

Martinez A, Halliez MC, Aliouat el M, Chabé M, Standaert-Vitse A, Fréalle E, Gantois N, Pottier M, Pinon A, Dei-Cas E, Aliouat-Denis CM.

PLoS One. 2013 Nov 6;8(11):e79958. doi: 10.1371/journal.pone.0079958. eCollection 2013.


Evidence of airborne excretion of Pneumocystis carinii during infection in immunocompetent rats. Lung involvement and antibody response.

Menotti J, Emmanuel A, Bouchekouk C, Chabe M, Choukri F, Pottier M, Sarfati C, Aliouat el M, Derouin F.

PLoS One. 2013 Apr 23;8(4):e62155. doi: 10.1371/journal.pone.0062155. Print 2013. Erratum in: PLoS One. 2013;8(6). doi:10.1371/annotation/f1ecc4cc-fc10-4605-98e5-181adf4cb325. Aliout, El Moukhtar [corrected to Aliouat, El Moukhtar].


Molecular detection of Histoplasma capsulatum in the lung of a free-ranging common noctule (Nyctalus noctula) from France using the Hcp100 gene.

González-González AE, Ramírez JA, Aliouat-Denis CM, Demanche C, Aliouat el M, Dei-Cas E, Chabé M, Taylor ML.

J Zoo Wildl Med. 2013 Mar;44(1):15-20.


Cryptosporidium parvum infection in SCID mice infected with only one oocyst: qPCR assessment of parasite replication in tissues and development of digestive cancer.

Benamrouz S, Guyot K, Gazzola S, Mouray A, Chassat T, Delaire B, Chabé M, Gosset P, Viscogliosi E, Dei-Cas E, Creusy C, Conseil V, Certad G.

PLoS One. 2012;7(12):e51232. doi: 10.1371/journal.pone.0051232. Epub 2012 Dec 13.


Near-universal prevalence of Pneumocystis and associated increase in mucus in the lungs of infants with sudden unexpected death.

Vargas SL, Ponce CA, Gallo M, Pérez F, Astorga JF, Bustamante R, Chabé M, Durand-Joly I, Iturra P, Miller RF, Aliouat el M, Dei-Cas E.

Clin Infect Dis. 2013 Jan;56(2):171-9. doi: 10.1093/cid/cis870. Epub 2012 Oct 16.


Characterizing Pneumocystis in the lungs of bats: understanding Pneumocystis evolution and the spread of Pneumocystis organisms in mammal populations.

Akbar H, Pinçon C, Aliouat-Denis CM, Derouiche S, Taylor ML, Pottier M, Carreto-Binaghi LH, González-González AE, Courpon A, Barriel V, Guillot J, Chabé M, Suarez-Alvarez RO, Aliouat el M, Dei-Cas E, Demanche C.

Appl Environ Microbiol. 2012 Nov;78(22):8122-36. doi: 10.1128/AEM.01791-12. Epub 2012 Sep 21.


[Transmission of Pneumocystis infection in humans].

Chabé M, Durand-Joly I, Dei-Cas E.

Med Sci (Paris). 2012 Jun-Jul;28(6-7):599-604. doi: 10.1051/medsci/2012286012. Epub 2012 Jul 16. Review. French.


Microplanktonic community structure in a coastal system relative to a Phaeocystis bloom inferred from morphological and tag pyrosequencing methods.

Monchy S, Grattepanche JD, Breton E, Meloni D, Sanciu G, Chabé M, Delhaes L, Viscogliosi E, Sime-Ngando T, Christaki U.

PLoS One. 2012;7(6):e39924. doi: 10.1371/journal.pone.0039924. Epub 2012 Jun 29.


Mixed human intra- and inter-subtype infections with the parasite Blastocystis sp.

Meloni D, Poirier P, Mantini C, Noël C, Gantois N, Wawrzyniak I, Delbac F, Chabé M, Delhaes L, Dei-Cas E, Fiori PL, El Alaoui H, Viscogliosi E.

Parasitol Int. 2012 Dec;61(4):719-22. doi: 10.1016/j.parint.2012.05.012. Epub 2012 May 29.


[Antibacterial immunity in respiratory tract: what role for the myeloid differentiation primary response protein 88 (MyD88) adaptor?].

Bezé F, Chabé M, Delhaes L.

Ann Biol Clin (Paris). 2012 May-Jun;70(3):245-50. doi: 10.1684/abc.2012.0697. Review. French.


The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management.

Delhaes L, Monchy S, Fréalle E, Hubans C, Salleron J, Leroy S, Prevotat A, Wallet F, Wallaert B, Dei-Cas E, Sime-Ngando T, Chabé M, Viscogliosi E.

PLoS One. 2012;7(4):e36313. doi: 10.1371/journal.pone.0036313. Epub 2012 Apr 27.


An Hcp100 gene fragment reveals Histoplasma capsulatum presence in lungs of Tadarida brasiliensis migratory bats.

González-González AE, Aliouat-Denis CM, Carreto-Binaghi LE, Ramírez JA, Rodríguez-Arellanes G, Demanche C, Chabé M, Aliouat EM, Dei-Cas E, Taylor ML.

Epidemiol Infect. 2012 Nov;140(11):1955-63. Epub 2011 Dec 8.


Exploring and quantifying fungal diversity in freshwater lake ecosystems using rDNA cloning/sequencing and SSU tag pyrosequencing.

Monchy S, Sanciu G, Jobard M, Rasconi S, Gerphagnon M, Chabé M, Cian A, Meloni D, Niquil N, Christaki U, Viscogliosi E, Sime-Ngando T.

Environ Microbiol. 2011 Jun;13(6):1433-53. doi: 10.1111/j.1462-2920.2011.02444.x. Epub 2011 Mar 9.


Molecular subtyping of Blastocystis sp. isolates from symptomatic patients in Italy.

Meloni D, Sanciu G, Poirier P, El Alaoui H, Chabé M, Delhaes L, Dei-Cas E, Delbac F, Luigi Fiori P, Di Cave D, Viscogliosi E.

Parasitol Res. 2011 Sep;109(3):613-9. doi: 10.1007/s00436-011-2294-7. Epub 2011 Feb 22.


Pneumocystis: from a doubtful unique entity to a group of highly diversified fungal species.

Chabé M, Aliouat-Denis CM, Delhaes L, Aliouat el M, Viscogliosi E, Dei-Cas E.

FEMS Yeast Res. 2011 Feb;11(1):2-17. doi: 10.1111/j.1567-1364.2010.00698.x. Epub 2010 Nov 26. Review.


Pneumocystis carinii and Pneumocystis wakefieldiae in wild Rattus norvegicus trapped in Thailand.

Chabé M, Herbreteau V, Hugot JP, Bouzard N, Deruyter L, Morand S, Dei-Cas E.

J Eukaryot Microbiol. 2010 Mar-Apr;57(2):213-7. doi: 10.1111/j.1550-7408.2009.00465.x. Epub 2010 Jan 22.


Vertical transmission of Pneumocystis jirovecii in humans.

Montes-Cano MA, Chabe M, Fontillon-Alberdi M, de-Lahorra C, Respaldiza N, Medrano FJ, Varela JM, Dei-Cas E, Calderon EJ.

Emerg Infect Dis. 2009 Jan;15(1):125-7. doi: 10.3201/eid1501.080242. No abstract available.


Nosocomial Pneumocystis jirovecii infections.

Nevez G, Chabé M, Rabodonirina M, Virmaux M, Dei-Cas E, Hauser PM, Totet A.

Parasite. 2008 Sep;15(3):359-65. Review.


Pneumocystis species, co-evolution and pathogenic power.

Aliouat-Denis CM, Chabé M, Demanche C, Aliouat el M, Viscogliosi E, Guillot J, Delhaes L, Dei-Cas E.

Infect Genet Evol. 2008 Sep;8(5):708-26. doi: 10.1016/j.meegid.2008.05.001. Epub 2008 May 9.


Exploring transplacental transmission of Pneumocystis oryctolagi in first-time pregnant and multiparous rabbit does.

Sanchez CA, Chabé M, Aliouat el M, Durand-Joly I, Gantois N, Conseil V, López C, Duriez T, Dei-Cas E, Vargas SL.

Med Mycol. 2007 Dec;45(8):701-7.


[Human pulmonary trichomonoses].

Duboucher C, Caby S, Chabé M, Gantois N, Delgado-Viscogliosi P, Pierce R, Capron M, Dei-Cas E, Viscogliosi E.

Presse Med. 2007 May;36(5 Pt 2):835-9. Epub 2007 Jan 8. Review. French.


Pneumocystis oryctolagi sp. nov., an uncultured fungus causing pneumonia in rabbits at weaning: review of current knowledge, and description of a new taxon on genotypic, phylogenetic and phenotypic bases.

Dei-Cas E, Chabé M, Moukhlis R, Durand-Joly I, Aliouat el M, Stringer JR, Cushion M, Noël C, de Hoog GS, Guillot J, Viscogliosi E.

FEMS Microbiol Rev. 2006 Nov;30(6):853-71. Review.


Molecular identification of Tritrichomonas foetus-like organisms as coinfecting agents of human Pneumocystis pneumonia.

Duboucher C, Caby S, Dufernez F, Chabé M, Gantois N, Delgado-Viscogliosi P, Billy C, Barré E, Torabi E, Capron M, Pierce RJ, Dei-Cas E, Viscogliosi E.

J Clin Microbiol. 2006 Mar;44(3):1165-8.


Molecular diagnosis of Pneumocystis pneumonia.

Durand-Joly I, Chabé M, Soula F, Delhaes L, Camus D, Dei-Cas E.

FEMS Immunol Med Microbiol. 2005 Sep 1;45(3):405-10. Review.


Molecular typing of Pneumocystis jirovecii found in formalin-fixed paraffin-embedded lung tissue sections from sudden infant death victims.

Chabé M, Vargas SL, Eyzaguirre I, Aliouat EM, Follet-Dumoulin A, Creusy C, Fleurisse L, Recourt C, Camus D, Dei-Cas E, Durand-Joly I.

Microbiology. 2004 May;150(Pt 5):1167-1172. doi: 10.1099/mic.0.26895-0.


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