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Best matches for Chédin F[au]:

Hybrids in the chromatin. Chédin F et al. Nat Plants. (2017)

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis. Zhang X et al. Nat Commun. (2017)

Nascent Connections: R-Loops and Chromatin Patterning. Chédin F et al. Trends Genet. (2016)

Search results

Items: 43

1.

Dimethyl fumarate dosing in humans increases frataxin expression: A potential therapy for Friedreich's Ataxia.

Jasoliya M, Sacca F, Sahdeo S, Chedin F, Pane C, Brescia Morra V, Filla A, Pook M, Cortopassi G.

PLoS One. 2019 Jun 3;14(6):e0217776. doi: 10.1371/journal.pone.0217776. eCollection 2019.

2.

The extruded non-template strand determines the architecture of R-loops.

Carrasco-Salas Y, Malapert A, Sulthana S, Molcrette B, Chazot-Franguiadakis L, Bernard P, Chédin F, Faivre-Moskalenko C, Vanoosthuyse V.

Nucleic Acids Res. 2019 May 8. pii: gkz341. doi: 10.1093/nar/gkz341. [Epub ahead of print]

PMID:
31066439
3.

High-resolution, strand-specific R-loop mapping via S9.6-based DNA-RNA immunoprecipitation and high-throughput sequencing.

Sanz LA, Chédin F.

Nat Protoc. 2019 Jun;14(6):1734-1755. doi: 10.1038/s41596-019-0159-1. Epub 2019 May 3.

PMID:
31053798
4.

Interplay between DNA sequence and negative superhelicity drives R-loop structures.

Stolz R, Sulthana S, Hartono SR, Malig M, Benham CJ, Chedin F.

Proc Natl Acad Sci U S A. 2019 Mar 26;116(13):6260-6269. doi: 10.1073/pnas.1819476116. Epub 2019 Mar 8.

5.

DNA Topoisomerase I differentially modulates R-loops across the human genome.

Manzo SG, Hartono SR, Sanz LA, Marinello J, De Biasi S, Cossarizza A, Capranico G, Chedin F.

Genome Biol. 2018 Jul 30;19(1):100. doi: 10.1186/s13059-018-1478-1.

6.

Author Correction: Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis.

Zhang X, Chiang HC, Wang Y, Zhang C, Smith S, Zhao X, Nair SJ, Michalek J, Jatoi I, Lautner M, Oliver B, Wang H, Petit A, Soler T, Brunet J, Mateo F, Angel Pujana M, Poggi E, Chaldekas K, Isaacs C, Peshkin BN, Ochoa O, Chedin F, Theoharis C, Sun LZ, Curiel TJ, Elledge R, Jin VX, Hu Y, Li R.

Nat Commun. 2018 Mar 30;9:16211. doi: 10.1038/ncomms16211.

7.

The Affinity of the S9.6 Antibody for Double-Stranded RNAs Impacts the Accurate Mapping of R-Loops in Fission Yeast.

Hartono SR, Malapert A, Legros P, Bernard P, Chédin F, Vanoosthuyse V.

J Mol Biol. 2018 Feb 2;430(3):272-284. doi: 10.1016/j.jmb.2017.12.016. Epub 2017 Dec 28.

8.

Hybrids in the chromatin.

Chédin F.

Nat Plants. 2017 Sep;3(9):692-693. doi: 10.1038/s41477-017-0011-y. No abstract available.

PMID:
28848239
9.

Attenuation of RNA polymerase II pausing mitigates BRCA1-associated R-loop accumulation and tumorigenesis.

Zhang X, Chiang HC, Wang Y, Zhang C, Smith S, Zhao X, Nair SJ, Michalek J, Jatoi I, Lautner M, Oliver B, Wang H, Petit A, Soler T, Brunet J, Mateo F, Angel Pujana M, Poggi E, Chaldekas K, Isaacs C, Peshkin BN, Ochoa O, Chedin F, Theoharis C, Sun LZ, Curiel TJ, Elledge R, Jin VX, Hu Y, Li R.

Nat Commun. 2017 Jun 26;8:15908. doi: 10.1038/ncomms15908. Erratum in: Nat Commun. 2018 Mar 30;9:16211.

10.

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.

Sagie S, Toubiana S, Hartono SR, Katzir H, Tzur-Gilat A, Havazelet S, Francastel C, Velasco G, Chédin F, Selig S.

Nat Commun. 2017 Jan 24;8:14015. doi: 10.1038/ncomms14015.

11.

Nascent Connections: R-Loops and Chromatin Patterning.

Chédin F.

Trends Genet. 2016 Dec;32(12):828-838. doi: 10.1016/j.tig.2016.10.002. Epub 2016 Oct 25. Review.

12.

Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage.

Stork CT, Bocek M, Crossley MP, Sollier J, Sanz LA, Chédin F, Swigut T, Cimprich KA.

Elife. 2016 Aug 23;5. pii: e17548. doi: 10.7554/eLife.17548.

13.

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.

Sanz LA, Hartono SR, Lim YW, Steyaert S, Rajpurkar A, Ginno PA, Xu X, Chédin F.

Mol Cell. 2016 Jul 7;63(1):167-78. doi: 10.1016/j.molcel.2016.05.032. Epub 2016 Jun 30.

14.

Comprehensive Proteomic Analysis of Mesenchymal Stem Cell Exosomes Reveals Modulation of Angiogenesis via Nuclear Factor-KappaB Signaling.

Anderson JD, Johansson HJ, Graham CS, Vesterlund M, Pham MT, Bramlett CS, Montgomery EN, Mellema MS, Bardini RL, Contreras Z, Hoon M, Bauer G, Fink KD, Fury B, Hendrix KJ, Chedin F, El-Andaloussi S, Hwang B, Mulligan MS, Lehtiö J, Nolta JA.

Stem Cells. 2016 Mar;34(3):601-13. doi: 10.1002/stem.2298. Epub 2016 Feb 19.

15.

GC skew is a conserved property of unmethylated CpG island promoters across vertebrates.

Hartono SR, Korf IF, Chédin F.

Nucleic Acids Res. 2015 Nov 16;43(20):9729-41. doi: 10.1093/nar/gkv811. Epub 2015 Aug 7.

16.

Genome-wide DNA hypomethylation and RNA:DNA hybrid accumulation in Aicardi-Goutières syndrome.

Lim YW, Sanz LA, Xu X, Hartono SR, Chédin F.

Elife. 2015 Jul 16;4. doi: 10.7554/eLife.08007.

17.

Transcription-associated R-loop formation across the human FMR1 CGG-repeat region.

Loomis EW, Sanz LA, Chédin F, Hagerman PJ.

PLoS Genet. 2014 Apr 17;10(4):e1004294. doi: 10.1371/journal.pgen.1004294. eCollection 2014 Apr.

18.

Arginine methylation facilitates the recruitment of TOP3B to chromatin to prevent R loop accumulation.

Yang Y, McBride KM, Hensley S, Lu Y, Chedin F, Bedford MT.

Mol Cell. 2014 Feb 6;53(3):484-97. doi: 10.1016/j.molcel.2014.01.011.

19.

An ultrasensitive high throughput screen for DNA methyltransferase 1-targeted molecular probes.

Fagan RL, Wu M, Chédin F, Brenner C.

PLoS One. 2013 Nov 13;8(11):e78752. doi: 10.1371/journal.pone.0078752. eCollection 2013.

20.

R-loop formation at Snord116 mediates topotecan inhibition of Ube3a-antisense and allele-specific chromatin decondensation.

Powell WT, Coulson RL, Gonzales ML, Crary FK, Wong SS, Adams S, Ach RA, Tsang P, Yamada NA, Yasui DH, Chédin F, LaSalle JM.

Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13938-43. doi: 10.1073/pnas.1305426110. Epub 2013 Aug 5.

21.

Inactive DNMT3B splice variants modulate de novo DNA methylation.

Gordon CA, Hartono SR, Chédin F.

PLoS One. 2013 Jul 19;8(7):e69486. doi: 10.1371/journal.pone.0069486. Print 2013.

22.

GC skew at the 5' and 3' ends of human genes links R-loop formation to epigenetic regulation and transcription termination.

Ginno PA, Lim YW, Lott PL, Korf I, Chédin F.

Genome Res. 2013 Oct;23(10):1590-600. doi: 10.1101/gr.158436.113. Epub 2013 Jul 18.

23.

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.

Ginno PA, Lott PL, Christensen HC, Korf I, Chédin F.

Mol Cell. 2012 Mar 30;45(6):814-25. doi: 10.1016/j.molcel.2012.01.017. Epub 2012 Mar 1.

24.

ICF syndrome mutations cause a broad spectrum of biochemical defects in DNMT3B-mediated de novo DNA methylation.

Moarefi AH, Chédin F.

J Mol Biol. 2011 Jun 24;409(5):758-72. doi: 10.1016/j.jmb.2011.04.050. Epub 2011 Apr 27.

PMID:
21549127
25.

The DNMT3 family of mammalian de novo DNA methyltransferases.

Chédin F.

Prog Mol Biol Transl Sci. 2011;101:255-85. doi: 10.1016/B978-0-12-387685-0.00007-X. Review.

PMID:
21507354
26.

Recognition of multivalent histone states associated with heterochromatin by UHRF1 protein.

Nady N, Lemak A, Walker JR, Avvakumov GV, Kareta MS, Achour M, Xue S, Duan S, Allali-Hassani A, Zuo X, Wang YX, Bronner C, Chédin F, Arrowsmith CH, Dhe-Paganon S.

J Biol Chem. 2011 Jul 8;286(27):24300-11. doi: 10.1074/jbc.M111.234104. Epub 2011 Apr 13.

27.

DNMT3L modulates significant and distinct flanking sequence preference for DNA methylation by DNMT3A and DNMT3B in vivo.

Wienholz BL, Kareta MS, Moarefi AH, Gordon CA, Ginno PA, Chédin F.

PLoS Genet. 2010 Sep 9;6(9):e1001106. doi: 10.1371/journal.pgen.1001106.

28.

UHRF1 Links the Histone code and DNA Methylation to ensure Faithful Epigenetic Memory Inheritance.

Bronner C, Fuhrmann G, Chédin FL, Macaluso M, Dhe-Paganon S.

Genet Epigenet. 2010 Jan 14;2009(2):29-36.

29.

A systematic search for DNA methyltransferase polymorphisms reveals a rare DNMT3L variant associated with subtelomeric hypomethylation.

El-Maarri O, Kareta MS, Mikeska T, Becker T, Diaz-Lacava A, Junen J, Nüsgen N, Behne F, Wienker T, Waha A, Oldenburg J, Chédin F.

Hum Mol Genet. 2009 May 15;18(10):1755-68. doi: 10.1093/hmg/ddp088. Epub 2009 Feb 26.

PMID:
19246518
30.

A SPOT on the chromatin landscape? Histone peptide arrays as a tool for epigenetic research.

Nady N, Min J, Kareta MS, Chédin F, Arrowsmith CH.

Trends Biochem Sci. 2008 Jul;33(7):305-13. doi: 10.1016/j.tibs.2008.04.014. Epub 2008 Jun 4.

PMID:
18538573
31.

Reconstitution and mechanism of the stimulation of de novo methylation by human DNMT3L.

Kareta MS, Botello ZM, Ennis JJ, Chou C, Chédin F.

J Biol Chem. 2006 Sep 8;281(36):25893-902. Epub 2006 Jul 7.

32.

The AddAB helicase/nuclease forms a stable complex with its cognate chi sequence during translocation.

Chédin F, Handa N, Dillingham MS, Kowalczykowski SC.

J Biol Chem. 2006 Jul 7;281(27):18610-7. Epub 2006 Apr 21.

33.

Physical and functional interactions between the human DNMT3L protein and members of the de novo methyltransferase family.

Chen ZX, Mann JR, Hsieh CL, Riggs AD, Chédin F.

J Cell Biochem. 2005 Aug 1;95(5):902-17.

PMID:
15861382
34.

R-loops at immunoglobulin class switch regions in the chromosomes of stimulated B cells.

Yu K, Chedin F, Hsieh CL, Wilson TE, Lieber MR.

Nat Immunol. 2003 May;4(5):442-51.

PMID:
12679812
35.

The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a.

Chedin F, Lieber MR, Hsieh CL.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16916-21. Epub 2002 Dec 12.

36.

A novel family of regulated helicases/nucleases from Gram-positive bacteria: insights into the initiation of DNA recombination.

Chédin F, Kowalczykowski SC.

Mol Microbiol. 2002 Feb;43(4):823-34. Review. No abstract available.

37.

The Bacillus subtilis AddAB helicase/nuclease is regulated by its cognate Chi sequence in vitro.

Chédin F, Ehrlich SD, Kowalczykowski SC.

J Mol Biol. 2000 Apr 21;298(1):7-20.

PMID:
10756102
38.
39.

Novel homologs of replication protein A in archaea: implications for the evolution of ssDNA-binding proteins.

Chédin F, Seitz EM, Kowalczykowski SC.

Trends Biochem Sci. 1998 Aug;23(8):273-7.

PMID:
9757822
40.

Inhibition of a naturally occurring rolling-circle replicon in derivatives of the theta-replicating plasmid pIP501.

Pujol C, Chédin F, Ehrlich SD, Jannière L.

Mol Microbiol. 1998 Aug;29(3):709-18.

41.

The recombination hot spot chi is embedded within islands of preferred DNA pairing sequences in the E. coli genome.

Tracy RB, Chédin F, Kowalczykowski SC.

Cell. 1997 Jul 25;90(2):205-6. No abstract available.

42.
43.

Frequency of deletion formation decreases exponentially with distance between short direct repeats.

Chédin F, Dervyn E, Dervyn R, Ehrlich SD, Noirot P.

Mol Microbiol. 1994 May;12(4):561-9.

PMID:
7934879

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