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Items: 35

1.

Genome and plasmid context of two rmtG-carrying Enterobacter hormaechei isolated from urinary tract infections in Brazil.

Martins ER, Bueno MFC, Francisco GR, Casella T, de Oliveira Garcia D, Cerdeira LT, Gerber AL, de Almeida LGP, Lincopan N, de Vasconcelos ATR, Nogueira MCL.

J Glob Antimicrob Resist. 2019 Jul 3. pii: S2213-7165(19)30164-X. doi: 10.1016/j.jgar.2019.06.020. [Epub ahead of print]

PMID:
31279132
2.

Early Dissemination of IncQ1 Plasmids in KPC-2-Producing Klebsiella pneumoniae CG258.

Campos PA, Fuga B, Cerdeira LT, Ferreira ML, Dias VL, Machado LG, Rossi I, Lincopan N, Gontijo-Filho PP, Ribas RM.

Microb Drug Resist. 2019 Oct;25(8):1257-1259. doi: 10.1089/mdr.2019.0123. Epub 2019 Jul 3. No abstract available.

PMID:
31188044
3.

Genomic features of a clinical ESBL-producing and colistin-resistant hypermucoviscous K. quasipneumoniae subsp. similipneumoniae from Brazil.

Ferreira ML, Araújo BF, Cerdeira LT, Toshio C, Ribas RM.

Braz J Infect Dis. 2019 May - Jun;23(3):207-209. doi: 10.1016/j.bjid.2019.05.003. Epub 2019 May 28. No abstract available.

4.

Molecular Detection of Class 1 Integron-Associated Gene Cassettes in KPC-2-Producing Klebsiella pneumoniae Clones by Whole-Genome Sequencing.

Fuga B, Royer S, Campos PA, Ferreira ML, Rossi I, Machado LG, Cerdeira LT, Fonseca Batistão DWD, Brito CS, Lincopan N, Gontijo-Filho PP, Ribas RM.

Microb Drug Resist. 2019 Oct;25(8):1127-1131. doi: 10.1089/mdr.2018.0437. Epub 2019 May 10.

PMID:
31074706
5.

Small IncQ1 and Col-Like Plasmids Harboring bla KPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258.

Cerdeira LT, Lam MMC, Wyres KL, Wick RR, Judd LM, Lopes R, Ribas RM, Morais MM, Holt KE, Lincopan N.

Antimicrob Agents Chemother. 2019 Feb 26;63(3). pii: e02140-18. doi: 10.1128/AAC.02140-18. Print 2019 Mar. No abstract available.

6.

Draft Genome Sequence of the Fungus Penicillium brasilianum (Strain LaBioMMi 136), a Plant Endophyte from Melia azedarach.

Fill TP, Baretta JF, de Almeida LGP, Malavazi I, Cerdeira LT, Samborskyy M, de Vasconcelos ATR, Leadlay P, Rodrigues-Filho E.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01235-18. doi: 10.1128/MRA.01235-18. eCollection 2018 Nov.

7.

Insights into a novel Tn4401 deletion (Tn4401i) in a multidrug-resistant Klebsiella pneumoniae clinical strain belonging to the high-risk clonal group 258 producing KPC-2.

Araújo BF, Royer S, Campos PA, Ferreira ML, Gonçalves IR, Machado LG, Lincopan N, Fernandes MR, Cerdeira LT, Batistão DWDF, Gontijo-Filho PP, Ribas RM.

Int J Antimicrob Agents. 2018 Oct;52(4):525-527. doi: 10.1016/j.ijantimicag.2018.08.011. Epub 2018 Aug 28. No abstract available.

PMID:
30165093
8.

Molecular characterization and clonal dynamics of nosocomial blaOXA-23 producing XDR Acinetobacter baumannii.

Royer S, de Campos PA, Araújo BF, Ferreira ML, Gonçalves IR, Batistão DWDF, Brígido RTES, Cerdeira LT, Machado LG, de Brito CS, Gontijo-Filho PP, Ribas RM.

PLoS One. 2018 Jun 11;13(6):e0198643. doi: 10.1371/journal.pone.0198643. eCollection 2018.

9.

Hypervirulence and biofilm production in KPC-2-producing Klebsiella pneumoniae CG258 isolated in Brazil.

Araújo BF, Ferreira ML, Campos PA, Royer S, Gonçalves IR, da Fonseca Batistão DW, Fernandes MR, Cerdeira LT, Brito CS, Lincopan N, Gontijo-Filho PP, Ribas RM.

J Med Microbiol. 2018 Apr;67(4):523-528. doi: 10.1099/jmm.0.000711. Epub 2018 Mar 6.

PMID:
29509136
10.

Draft genome sequence of a KPC-2-producing Klebsiella pneumoniae ST340 carrying blaCTX-M-15 and blaCTX-M-59 genes: a rich genome of mobile genetic elements and genes encoding antibiotic resistance.

Casella T, de Morais ABZ, de Paula Barcelos DD, Tolentino FM, Cerdeira LT, Bueno MFC, Francisco GR, de Andrade LN, da Costa Darini AL, de Oliveira Garcia D, Lincopan N, Nogueira MCL.

J Glob Antimicrob Resist. 2018 Jun;13:35-36. doi: 10.1016/j.jgar.2018.02.011. Epub 2018 Feb 21.

PMID:
29476983
11.

Detection of ISEcp1-associated blaCTX-M-15-mediated resistance to colistin in KPC-producing Klebsiella pneumoniae isolates.

Ferreira ML, Gonçalves IR, Araújo BF, Royer S, Campos PA, Batistão DWDF, Cerdeira LT, de Brito CS, Gontijo-Filho PP, Ribas RM.

Int J Antimicrob Agents. 2018 May;51(5):810-811. doi: 10.1016/j.ijantimicag.2018.02.002. Epub 2018 Feb 9. No abstract available.

PMID:
29432869
12.

A Novel Multifunctional β-N-Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove.

Soares FL, Marcon J, Pereira E Silva MC, Khakhum N, Cerdeira LT, Ottoni JR, Domingos DF, Taketani RG, de Oliveira VM, Lima AOS, Azevedo JL, Rodrigues JLM, Andreote FD.

Bioengineering (Basel). 2017 Jul 9;4(3). pii: E62. doi: 10.3390/bioengineering4030062.

13.

IncX3 plasmid harboring a non-Tn4401 genetic element (NTEKPC) in a hospital-associated clone of KPC-2-producing Klebsiella pneumoniae ST340/CG258.

Cerdeira LT, Cunha MPV, Francisco GR, Bueno MFC, Araujo BF, Ribas RM, Gontijo-Filho PP, Knöbl T, de Oliveira Garcia D, Lincopan N.

Diagn Microbiol Infect Dis. 2017 Oct;89(2):164-167. doi: 10.1016/j.diagmicrobio.2017.06.022. Epub 2017 Jul 1.

PMID:
28807400
14.

Changed epidemiology during intra and interhospital spread of high-risk clones of vanA-containing Enterococcus in Brazilian hospitals.

Sacramento AG, Zanella RC, Esposito F, Costa EAS, de Almeida LM, Pires C, de Brito AC, Mamizuka EM, Cerdeira LT, Lincopan N.

Diagn Microbiol Infect Dis. 2017 Aug;88(4):348-351. doi: 10.1016/j.diagmicrobio.2017.05.008. Epub 2017 May 18.

PMID:
28622949
15.

Draft genome sequence of a CTX-M-15-producing endophytic Klebsiella pneumoniae ST198 isolate from commercial lettuce.

Lopes R, Cerdeira LT, Fernandes MR, Pérez-Chaparro PJ, McCulloch JA, Lincopan N.

J Glob Antimicrob Resist. 2017 Sep;10:19-20. doi: 10.1016/j.jgar.2017.03.005. Epub 2017 May 30.

PMID:
28576742
16.

Draft genome sequence of a CTX-M-15-producing Escherichia coli ST345 from commercial chicken meat in Brazil.

Casella T, Cerdeira LT, Fernandes MR, Souza TA, Haenni M, Madec JY, Lincopan N, Nogueira MCL.

J Glob Antimicrob Resist. 2017 Jun;9:124-125. doi: 10.1016/j.jgar.2017.04.002. Epub 2017 May 27.

PMID:
28559168
17.

Identification of the cfr methyltransferase gene in Enterococcus faecalis isolated from swine: First report in Brazil.

Filsner PHLN, de Almeida LM, Moreno M, Moreno LZ, Matajira CEC, Silva KC, Pires C, Cerdeira LT, Sacramento AG, Mamizuka EM, Lincopan N, Moreno AM.

J Glob Antimicrob Resist. 2017 Mar;8:192-193. doi: 10.1016/j.jgar.2017.02.002. Epub 2017 Mar 6. No abstract available.

PMID:
28274847
18.

Identification of new sequence types among Enterococcus faecium and Enterococcus faecalis carrying the vanA gene in retail chicken meat.

Sacramento AG, Zanella RC, de Almeida LM, Pires C, Popazoglo C, Costa EAS, Cerdeira LT, Mamizuka EM, Lincopan N.

J Glob Antimicrob Resist. 2016 Mar;4:72-73. doi: 10.1016/j.jgar.2015.10.005. Epub 2015 Nov 14. No abstract available.

PMID:
27436399
19.

Environmental dissemination of vanA-containing Enterococcus faecium strains belonging to hospital-associated clonal lineages.

Sacramento AG, Cerdeira LT, de Almeida LM, Zanella RC, Pires C, Sato MI, Costa EA, Roberto NP, Mamizuka EM, Lincopan N.

J Antimicrob Chemother. 2016 Jan;71(1):264-6. doi: 10.1093/jac/dkv320. Epub 2015 Oct 12. No abstract available.

PMID:
26462988
20.

Characterization of Tn3000, a Transposon Responsible for blaNDM-1 Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India.

Campos JC, da Silva MJ, dos Santos PR, Barros EM, Pereira Mde O, Seco BM, Magagnin CM, Leiroz LK, de Oliveira TG, de Faria-Júnior C, Cerdeira LT, Barth AL, Sampaio SC, Zavascki AP, Poirel L, Sampaio JL.

Antimicrob Agents Chemother. 2015 Dec;59(12):7387-95. doi: 10.1128/AAC.01458-15. Epub 2015 Sep 21.

21.

Complete Genome Sequence of Linezolid-Susceptible Staphylococcus haemolyticus Sh29/312/L2, a Clonal Derivative of a Linezolid-Resistant Clinical Strain.

de Almeida LM, Pires C, Cerdeira LT, de Oliveira TG, McCulloch JA, Perez-Chaparro PJ, Sacramento AG, Brito AC, da Silva JL, de Araújo MR, Lincopan N, Martin MJ, Gilmore MS, Mamizuka EM.

Genome Announc. 2015 May 21;3(3). pii: e00494-15. doi: 10.1128/genomeA.00494-15.

22.

A Variant Detection Pipeline for Inherited Cardiomyopathy-Associated Genes Using Next-Generation Sequencing.

Oliveira TG, Mitne-Neto M, Cerdeira LT, Marsiglia JD, Arteaga-Fernandez E, Krieger JE, Pereira AC.

J Mol Diagn. 2015 Jul;17(4):420-30. doi: 10.1016/j.jmoldx.2015.02.003. Epub 2015 Apr 30.

PMID:
25937619
23.

Complete Genome Sequence of an F8-Like Lytic Myovirus ({varphi}SPM-1) That Infects Metallo-β-Lactamase-Producing Pseudomonas aeruginosa.

Neves PR, Cerdeira LT, Mitne-Neto M, Oliveira TG, McCulloch JA, Sampaio JL, Mamizuka EM, Levy CE, Sato MI, Lincopan N.

Genome Announc. 2014 Apr 3;2(2). pii: e00061-14. doi: 10.1128/genomeA.00061-14.

24.

Complete nucleotide sequences of two blaKPC-2-bearing IncN Plasmids isolated from sequence type 442 Klebsiella pneumoniae clinical strains four years apart.

Pérez-Chaparro PJ, Cerdeira LT, Queiroz MG, de Lima CP, Levy CE, Pavez M, Lincopan N, Gonçalves EC, Mamizuka EM, Sampaio JL, Nunes MR, McCulloch JA.

Antimicrob Agents Chemother. 2014 May;58(5):2958-60. doi: 10.1128/AAC.02341-13. Epub 2014 Feb 24.

25.

Complete genome sequence of Corynebacterium pseudotuberculosis biovar ovis strain P54B96 isolated from antelope in South Africa obtained by rapid next generation sequencing technology.

Hassan SS, Guimarães LC, Pereira Ude P, Islam A, Ali A, Bakhtiar SM, Ribeiro D, Rodrigues Dos Santos A, Soares Sde C, Dorella F, Pinto AC, Schneider MP, Barbosa MS, Almeida S, Abreu V, Aburjaile F, Carneiro AR, Cerdeira LT, Fiaux K, Barbosa E, Diniz C, Rocha FS, Ramos RT, Jain N, Tiwari S, Barh D, Miyoshi A, Müller B, Silva A, Azevedo V.

Stand Genomic Sci. 2012 Dec 19;7(2):189-99. doi: 10.4056/sigs.3066455. Epub 2012 Dec 15.

26.

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.

Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimarães LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V.

J Bacteriol. 2012 Dec;194(23):6620-1. doi: 10.1128/JB.01616-12.

27.

Complete genome sequences of Corynebacterium pseudotuberculosis strains 3/99-5 and 42/02-A, isolated from sheep in Scotland and Australia, respectively.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Sep;194(17):4736-7. doi: 10.1128/JB.00918-12.

28.

Complete genome sequence of Corynebacterium pseudotuberculosis strain 1/06-A, isolated from a horse in North America.

Pethick FE, Lainson AF, Yaga R, Flockhart A, Smith DG, Donachie W, Cerdeira LT, Silva A, Bol E, Lopes TS, Barbosa MS, Pinto AC, Dos Santos AR, Soares SC, Almeida SS, Guimaraes LC, Aburjaile FF, Abreu VA, Ribeiro D, Fiaux KK, Diniz CA, Barbosa EG, Pereira UP, Hassan SS, Ali A, Bakhtiar SM, Dorella FA, Carneiro AR, Ramos RT, Rocha FS, Schneider MP, Miyoshi A, Azevedo V, Fontaine MC.

J Bacteriol. 2012 Aug;194(16):4476. doi: 10.1128/JB.00922-12.

29.

A Scheduling Algorithm for Computational Grids that Minimizes Centralized Processing in Genome Assembly of Next-Generation Sequencing Data.

Lima J, Cerdeira LT, Bol E, Schneider MP, Silva A, Azevedo V, Abelém AJ.

Front Genet. 2012 Mar 19;3:38. doi: 10.3389/fgene.2012.00038. eCollection 2012.

30.

Complete genome sequence of Corynebacterium pseudotuberculosis strain CIP 52.97, isolated from a horse in Kenya.

Cerdeira LT, Schneider MP, Pinto AC, de Almeida SS, dos Santos AR, Barbosa EG, Ali A, Aburjaile FF, de Abreu VA, Guimarães LC, Soares Sde C, Dorella FA, Rocha FS, Bol E, Gomes de Sá PH, Lopes TS, Barbosa MS, Carneiro AR, Jucá Ramos RT, Coimbra NA, Lima AR, Barh D, Jain N, Tiwari S, Raja R, Zambare V, Ghosh P, Trost E, Tauch A, Miyoshi A, Azevedo V, Silva A.

J Bacteriol. 2011 Dec;193(24):7025-6. doi: 10.1128/JB.06293-11.

31.

Whole-genome sequence of Corynebacterium pseudotuberculosis PAT10 strain isolated from sheep in Patagonia, Argentina.

Cerdeira LT, Pinto AC, Schneider MP, de Almeida SS, dos Santos AR, Barbosa EG, Ali A, Barbosa MS, Carneiro AR, Ramos RT, de Oliveira RS, Barh D, Barve N, Zambare V, Belchior SE, Guimarães LC, de Castro Soares S, Dorella FA, Rocha FS, de Abreu VA, Tauch A, Trost E, Miyoshi A, Azevedo V, Silva A.

J Bacteriol. 2011 Nov;193(22):6420-1. doi: 10.1128/JB.06044-11.

32.

Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.

Stynen AP, Lage AP, Moore RJ, Rezende AM, de Resende VD, Ruy Pde C, Daher N, Resende Dde M, de Almeida SS, Soares Sde C, de Abreu VA, Rocha AA, dos Santos AR, Barbosa EG, Costa DF, Dorella FA, Miyoshi A, de Lima AR, Campos FD, de Sá PG, Lopes TS, Rodrigues RM, Carneiro AR, Leão T, Cerdeira LT, Ramos RT, Silva A, Azevedo V, Ruiz JC.

J Bacteriol. 2011 Oct;193(20):5871-2. doi: 10.1128/JB.05854-11.

33.

Whole genome sequencing of environmental Vibrio cholerae O1 from 10 nanograms of DNA using short reads.

Pérez Chaparro PJ, McCulloch JA, Cerdeira LT, Al-Dilaimi A, Canto de Sá LL, de Oliveira R, Tauch A, de Carvalho Azevedo VA, Cruz Schneider MP, da Silva AL.

J Microbiol Methods. 2011 Nov;87(2):208-12. doi: 10.1016/j.mimet.2011.08.003. Epub 2011 Aug 17.

34.

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A.

J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18.

35.

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.

Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V.

PLoS One. 2011 Apr 18;6(4):e18551. doi: 10.1371/journal.pone.0018551.

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