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Getting drugs into Gram-negative bacteria: Rational rules for permeation through general porins.

Acosta-Gutierrez S, Ferrara L, Pathania M, Masi M, Wang J, Bodrenko I, Zahn M, Winterhalter M, Stavenger RA, Pages JM, Naismith JH, van den Berg B, Page M, Ceccarelli M.

ACS Infect Dis. 2018 Jul 2. doi: 10.1021/acsinfecdis.8b00108. [Epub ahead of print]


Unusual Signs and Symptoms in HIV-Positive Patients Coinfected with Leishmania spp: The Importance of Neglected Tropical Disease in Differential Diagnosis.

Ceccarelli M, Rullo EV, Condorelli F, Vitale F, Marco VD, Nunnari G, Pellicanò GF.

Open Access Maced J Med Sci. 2018 Apr 25;6(5):843-847. doi: 10.3889/oamjms.2018.186. eCollection 2018 May 20.


Leishmania Infection Induces MicroRNA hsa-miR-346 in Human Cell Line-Derived Macrophages.

Diotallevi A, De Santi M, Buffi G, Ceccarelli M, Vitale F, Galluzzi L, Magnani M.

Front Microbiol. 2018 May 17;9:1019. doi: 10.3389/fmicb.2018.01019. eCollection 2018.


Effects of amphipathic profile regularization on structural order and interaction with membrane models of two highly cationic branched peptides with β-sheet propensity.

Serra I, Casu M, Ceccarelli M, Gameiro P, Rinaldi AC, Scorciapino MA.

Peptides. 2018 Jul;105:28-36. doi: 10.1016/j.peptides.2018.05.010. Epub 2018 May 22.


Centrosome Linker-induced Tetraploid Segregation Errors Link Rhabdoid Phenotypes and Lethal Colorectal Cancers.

Remo A, Manfrin E, Parcesepe P, Ferrarini A, Han HS, Ugnius M, Laudanna C, Simbolo M, Malanga D, Mendes Oliveira D, Baritono E, Colangelo T, Sabatino L, Giuliani J, Molinari E, Garonzi M, Xumerle L, Delledonne M, Giordano G, Ghimenton C, Lonardo F, D'angelo F, Grillo F, Mastracci L, Viglietto G, Ceccarelli M, Colantuoni V, Scarpa A, Pancione M.

Mol Cancer Res. 2018 May 21. pii: molcanres.0062.2018. doi: 10.1158/1541-7786.MCR-18-0062. [Epub ahead of print]


DNAJC17 is localized in nuclear speckles and interacts with splicing machinery components.

Pascarella A, Ferrandino G, Credendino SC, Moccia C, D'Angelo F, Miranda B, D'Ambrosio C, Bielli P, Spadaro O, Ceccarelli M, Scaloni A, Sette C, De Felice M, De Vita G, Amendola E.

Sci Rep. 2018 May 17;8(1):7794. doi: 10.1038/s41598-018-26093-1.


Analysis of the causes of the seizure and destruction of carcasses and organs in a slaughterhouse in central Italy in the 2010-2016 period.

Ceccarelli M, Leprini E, Sechi P, Iulietto MF, Grispoldi L, Goretti E, Cenci-Goga BT.

Ital J Food Saf. 2018 Mar 31;7(1):6899. doi: 10.4081/ijfs.2018.6899. eCollection 2018 Mar 31.


Real-time PCR applications for diagnosis of leishmaniasis.

Galluzzi L, Ceccarelli M, Diotallevi A, Menotta M, Magnani M.

Parasit Vectors. 2018 May 2;11(1):273. doi: 10.1186/s13071-018-2859-8. Review.


Head and neck squamous cell carcinoma and its correlation with human papillomavirus in people living with HIV: a systematic review.

Ceccarelli M, Rullo EV, Facciolà A, Madeddu G, Cacopardo B, Taibi R, D'Aleo F, Pinzone MR, Picerno I, di Rosa M, Visalli G, Condorelli F, Nunnari G, Pellicanò GF.

Oncotarget. 2018 Mar 30;9(24):17171-17180. doi: 10.18632/oncotarget.24660. eCollection 2018 Mar 30. Review.


Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae.

Pathania M, Acosta-Gutierrez S, Bhamidimarri SP, Baslé A, Winterhalter M, Ceccarelli M, van den Berg B.

Structure. 2018 May 1;26(5):708-721.e4. doi: 10.1016/j.str.2018.03.010. Epub 2018 Apr 12.


3,5-Diiodo-L-Thyronine Affects Structural and Metabolic Features of Skeletal Muscle Mitochondria in High-Fat-Diet Fed Rats Producing a Co-adaptation to the Glycolytic Fiber Phenotype.

Silvestri E, Cioffi F, De Matteis R, Senese R, de Lange P, Coppola M, Salzano AM, Scaloni A, Ceccarelli M, Goglia F, Lanni A, Moreno M, Lombardi A.

Front Physiol. 2018 Mar 9;9:194. doi: 10.3389/fphys.2018.00194. eCollection 2018.


Prevalence and characterisation of shigatoxigenic Escherichia coli isolated from beef cattle fed with prebiotics.

Grispoldi L, Bertero F, Franceschini S, Mastrosimone F, Sechi P, Iulietto MF, Ceccarelli M, Cenci-Goga BT.

Ital J Food Saf. 2017 Dec 14;6(4):6958. doi: 10.4081/ijfs.2017.6958. eCollection 2017 Oct 20.


Free energy calculations and molecular properties of substrate translocation through OccAB porins.

Benkerrou D, Ceccarelli M.

Phys Chem Chem Phys. 2018 Mar 28;20(13):8533-8546. doi: 10.1039/c7cp08299a.


Tis21-gene therapy inhibits medulloblastoma growth in a murine allograft model.

Presutti D, Ceccarelli M, Micheli L, Papoff G, Santini S, Samperna S, Lalli C, Zentilin L, Ruberti G, Tirone F.

PLoS One. 2018 Mar 14;13(3):e0194206. doi: 10.1371/journal.pone.0194206. eCollection 2018.


A collection of annotated and harmonized human breast cancer transcriptome datasets, including immunologic classification.

Roelands J, Decock J, Boughorbel S, Rinchai D, Maccalli C, Ceccarelli M, Black M, Print C, Chou J, Presnell S, Quinn C, Jithesh P, Syed N, Al Bader SBJ, Bedri S, Wang E, Marincola FM, Chaussabel D, Kuppen P, Miller LD, Bedognetti D, Hendrickx W.

Version 2. F1000Res. 2017 Mar 20 [revised 2018 Jan 1];6:296. doi: 10.12688/f1000research.10960.2. eCollection 2017.


Fate of selected pathogens in spiked «SALAME NOSTRANO» produced without added nitrates following the application of NONIT™ technology.

Cenci-Goga BT, Karama M, Sechi P, Iulietto MF, Grispoldi L, Selvaggini R, Ceccarelli M, Barbera S.

Meat Sci. 2018 May;139:247-254. doi: 10.1016/j.meatsci.2018.02.002. Epub 2018 Feb 14.


yVDAC2, the second mitochondrial porin isoform of Saccharomyces cerevisiae.

Guardiani C, Magrì A, Karachitos A, Di Rosa MC, Reina S, Bodrenko I, Messina A, Kmita H, Ceccarelli M, De Pinto V.

Biochim Biophys Acta. 2018 Apr;1859(4):270-279. doi: 10.1016/j.bbabio.2018.01.008. Epub 2018 Feb 2.


RGBM: regularized gradient boosting machines for identification of the transcriptional regulators of discrete glioma subtypes.

Mall R, Cerulo L, Garofano L, Frattini V, Kunji K, Bensmail H, Sabedot TS, Noushmehr H, Lasorella A, Iavarone A, Ceccarelli M.

Nucleic Acids Res. 2018 Apr 20;46(7):e39. doi: 10.1093/nar/gky015.


Risk factors of venous thrombo-embolism during cytomegalovirus infection in immunocompetent individuals. A systematic review.

Ceccarelli M, Venanzi Rullo E, Nunnari G.

Eur J Clin Microbiol Infect Dis. 2018 Mar;37(3):381-390. doi: 10.1007/s10096-018-3185-y. Epub 2018 Jan 18. Review.


A metabolic function of FGFR3-TACC3 gene fusions in cancer.

Frattini V, Pagnotta SM, Tala, Fan JJ, Russo MV, Lee SB, Garofano L, Zhang J, Shi P, Lewis G, Sanson H, Frederick V, Castano AM, Cerulo L, Rolland DCM, Mall R, Mokhtari K, Elenitoba-Johnson KSJ, Sanson M, Huang X, Ceccarelli M, Lasorella A, Iavarone A.

Nature. 2018 Jan 11;553(7687):222-227. doi: 10.1038/nature25171. Epub 2018 Jan 3.


Kaposi's sarcoma in HIV-infected patients in the era of new antiretrovirals.

Facciolà A, Venanzi Rullo E, Ceccarelli M, D'Aleo F, Di Rosa M, Pinzone MR, Condorelli F, Visalli G, Picerno I, Fisichella R, Nunnari G, Pellicanò GF.

Eur Rev Med Pharmacol Sci. 2017 Dec;21(24):5868-5869. doi: 10.26355/eurrev_201712_14036.


Hepatitis C-related hepatocellular carcinoma: diagnostic and therapeutic management in HIV-patients.

D'Aleo F, Ceccarelli M, Venanzi Rullo E, Facciolà A, Di Rosa M, Pinzone MR, Condorelli F, Visalli G, Picerno I, Berretta M, Pellicanò GF, Nunnari G.

Eur Rev Med Pharmacol Sci. 2017 Dec;21(24):5859-5867. doi: 10.26355/eurrev_201712_14035.


Image-guided IMRT with simultaneous integrated boost as per RTOG 0529 for the treatment of anal cancer.

Arcadipane F, Franco P, Ceccarelli M, Furfaro G, Rondi N, Trino E, Martini S, Iorio GC, Mistrangelo M, Cassoni P, Racca P, Morino M, Ricardi U.

Asia Pac J Clin Oncol. 2018 Jun;14(3):217-223. doi: 10.1111/ajco.12768. Epub 2017 Aug 30.


Minimally-invasive glaucoma surgeries (MIGS) for open angle glaucoma: A systematic review and meta-analysis.

Lavia C, Dallorto L, Maule M, Ceccarelli M, Fea AM.

PLoS One. 2017 Aug 29;12(8):e0183142. doi: 10.1371/journal.pone.0183142. eCollection 2017. Review.


Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.).

Mascagni F, Giordani T, Ceccarelli M, Cavallini A, Natali L.

BMC Genomics. 2017 Aug 18;18(1):634. doi: 10.1186/s12864-017-4050-6.


Terminal Differentiation of Adult Hippocampal Progenitor Cells Is a Step Functionally Dissociable from Proliferation and Is Controlled by Tis21, Id3 and NeuroD2.

Micheli L, Ceccarelli M, Gioia R, D'Andrea G, Farioli-Vecchioli S, Costanzi M, Saraulli D, Cestari V, Tirone F.

Front Cell Neurosci. 2017 Jul 10;11:186. doi: 10.3389/fncel.2017.00186. eCollection 2017.


Sensing Single Molecule Penetration into Nanopores: Pushing the Time Resolution to the Diffusion Limit.

Bodrenko IV, Wang J, Salis S, Winterhalter M, Ceccarelli M.

ACS Sens. 2017 Aug 25;2(8):1184-1190. doi: 10.1021/acssensors.7b00311. Epub 2017 Jul 28.


Specific gene expression signatures induced by the multiple oncogenic alterations that occur within the PTEN/PI3K/AKT pathway in lung cancer.

De Marco C, Laudanna C, Rinaldo N, Oliveira DM, Ravo M, Weisz A, Ceccarelli M, Caira E, Rizzuto A, Zoppoli P, Malanga D, Viglietto G.

PLoS One. 2017 Jun 29;12(6):e0178865. doi: 10.1371/journal.pone.0178865. eCollection 2017.


A phase II, multicentre trial of decitabine in higher-risk chronic myelomonocytic leukemia.

Santini V, Allione B, Zini G, Gioia D, Lunghi M, Poloni A, Cilloni D, Sanna A, Masiera E, Ceccarelli M, Abdel-Wahab O, Terenzi A, Angelucci E, Finelli C, Onida F, Pelizzari A, Ferrero D, Saglio G, Figueroa M, Levis A.

Leukemia. 2018 Feb;32(2):413-418. doi: 10.1038/leu.2017.186. Epub 2017 Jun 13.


Porin flexibility in Providencia stuartii: cell-surface-exposed loops L5 and L7 are markers of Providencia porin OmpPst1.

Tran QT, Maigre L, D'Agostino T, Ceccarelli M, Winterhalter M, Pagès JM, Davin-Regli A.

Res Microbiol. 2017 Oct;168(8):685-699. doi: 10.1016/j.resmic.2017.05.003. Epub 2017 May 30.


The use of kDNA minicircle subclass relative abundance to differentiate between Leishmania (L.) infantum and Leishmania (L.) amazonensis.

Ceccarelli M, Galluzzi L, Diotallevi A, Andreoni F, Fowler H, Petersen C, Vitale F, Magnani M.

Parasit Vectors. 2017 May 16;10(1):239. doi: 10.1186/s13071-017-2181-x.


Bacterial Outer Membrane Porins as Electrostatic Nanosieves: Exploring Transport Rules of Small Polar Molecules.

Bajaj H, Acosta Gutierrez S, Bodrenko I, Malloci G, Scorciapino MA, Winterhalter M, Ceccarelli M.

ACS Nano. 2017 Jun 27;11(6):5465-5473. doi: 10.1021/acsnano.6b08613. Epub 2017 May 12.


Khorana score and histotype predicts incidence of early venous thromboembolism in non-Hodgkin lymphomas. A pooled-data analysis of 12 clinical trials of Fondazione Italiana Linfomi (FIL).

Santi RM, Ceccarelli M, Bernocco E, Monagheddu C, Evangelista A, Valeri F, Monaco F, Vitolo U, Cortelazzo S, Cabras MG, Spina M, Baldini L, Boccomini C, Chiappella A, Bari A, Luminari S, Visco C, Calabrese M, Limberti G, Levis A, Contino L, Ciccone G, Ladetto M.

Thromb Haemost. 2017 Apr 27. doi: 10.1160/TH16-11-0895. [Epub ahead of print]


Use of the Distribution Coefficient in Brain Polar Lipids for the Assessment of Drug-Induced Phospholipidosis Risk.

Ceccarelli M, Wagner B, Alvarez-Sánchez R, Cruciani G, Goracci L.

Chem Res Toxicol. 2017 May 15;30(5):1145-1156. doi: 10.1021/acs.chemrestox.6b00459. Epub 2017 Apr 25.


Structure-metabolism relationships in human-AOX: Chemical insights from a large database of aza-aromatic and amide compounds.

Lepri S, Ceccarelli M, Milani N, Tortorella S, Cucco A, Valeri A, Goracci L, Brink A, Cruciani G.

Proc Natl Acad Sci U S A. 2017 Apr 18;114(16):E3178-E3187. doi: 10.1073/pnas.1618881114. Epub 2017 Apr 3.


Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis.

Hendrickx W, Simeone I, Anjum S, Mokrab Y, Bertucci F, Finetti P, Curigliano G, Seliger B, Cerulo L, Tomei S, Delogu LG, Maccalli C, Wang E, Miller LD, Marincola FM, Ceccarelli M, Bedognetti D.

Oncoimmunology. 2017 Feb 6;6(2):e1253654. doi: 10.1080/2162402X.2016.1253654. eCollection 2017.


Identification of long non-coding transcripts with feature selection: a comparative study.

Ventola GM, Noviello TM, D'Aniello S, Spagnuolo A, Ceccarelli M, Cerulo L.

BMC Bioinformatics. 2017 Mar 23;18(1):187. doi: 10.1186/s12859-017-1594-z.


Detection of statistically significant network changes in complex biological networks.

Mall R, Cerulo L, Bensmail H, Iavarone A, Ceccarelli M.

BMC Syst Biol. 2017 Mar 4;11(1):32. doi: 10.1186/s12918-017-0412-6.


TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages.

Silva TC, Colaprico A, Olsen C, D'Angelo F, Bontempi G, Ceccarelli M, Noushmehr H.

Version 2. F1000Res. 2016 Jun 29 [revised 2016 Jan 1];5:1542. doi: 10.12688/f1000research.8923.2. eCollection 2016.


General Method to Determine the Flux of Charged Molecules through Nanopores Applied to β-Lactamase Inhibitors and OmpF.

Ghai I, Pira A, Scorciapino MA, Bodrenko I, Benier L, Ceccarelli M, Winterhalter M, Wagner R.

J Phys Chem Lett. 2017 Mar 16;8(6):1295-1301. doi: 10.1021/acs.jpclett.7b00062. Epub 2017 Mar 6.


Passive Intestinal Absorption of Representative Plant Secondary Metabolites: A Physicochemical Study.

Petit C, Ceccarelli M, Cretton S, Houriet J, Skalicka-Woźniak K, Christen P, Carrupt PA, Goracci L, Wolfender JL.

Planta Med. 2017 May;83(8):718-726. doi: 10.1055/s-0043-101915. Epub 2017 Feb 13.


Rationalizing the permeation of polar antibiotics into Gram-negative bacteria.

Scorciapino MA, Acosta-Gutierrez S, Benkerrou D, D'Agostino T, Malloci G, Samanta S, Bodrenko I, Ceccarelli M.

J Phys Condens Matter. 2017 Mar 22;29(11):113001. doi: 10.1088/1361-648X/aa543b. Epub 2017 Feb 3.


Second-line rituximab, lenalidomide, and bendamustine in mantle cell lymphoma: a phase II clinical trial of the Fondazione Italiana Linfomi.

Zaja F, Ferrero S, Stelitano C, Ferrari A, Salvi F, Arcari A, Musuraca G, Botto B, Spina M, Cellini C, Patti C, Liberati AM, Minotto C, Pileri SA, Ceccarelli M, Volpetti S, Ferranti A, Drandi D, Montechiarello E, Ladetto M, Carmichael J, Fanin R.

Haematologica. 2017 May;102(5):e203-e206. doi: 10.3324/haematol.2016.154211. Epub 2017 Jan 12. No abstract available.


Suppression of Medulloblastoma Lesions by Forced Migration of Preneoplastic Precursor Cells with Intracerebellar Administration of the Chemokine Cxcl3.

Ceccarelli M, Micheli L, Tirone F.

Front Pharmacol. 2016 Dec 16;7:484. doi: 10.3389/fphar.2016.00484. eCollection 2016.


Leishmania infantum Induces Mild Unfolded Protein Response in Infected Macrophages.

Galluzzi L, Diotallevi A, De Santi M, Ceccarelli M, Vitale F, Brandi G, Magnani M.

PLoS One. 2016 Dec 15;11(12):e0168339. doi: 10.1371/journal.pone.0168339. eCollection 2016.


Functional Genomics Identifies Tis21-Dependent Mechanisms and Putative Cancer Drug Targets Underlying Medulloblastoma Shh-Type Development.

Gentile G, Ceccarelli M, Micheli L, Tirone F, Cavallaro S.

Front Pharmacol. 2016 Nov 30;7:449. eCollection 2016.


Pesticide toxicogenomics across scales: in vitro transcriptome predicts mechanisms and outcomes of exposure in vivo.

Porreca I, D'Angelo F, De Franceschi L, Mattè A, Ceccarelli M, Iolascon A, Zamò A, Russo F, Ravo M, Tarallo R, Scarfò M, Weisz A, De Felice M, Mallardo M, Ambrosino C.

Sci Rep. 2016 Dec 1;6:38131. doi: 10.1038/srep38131.


Analysis of miRNA profiles identified miR-196a as a crucial mediator of aberrant PI3K/AKT signaling in lung cancer cells.

Guerriero I, D'Angelo D, Pallante P, Santos M, Scrima M, Malanga D, De Marco C, Ravo M, Weisz A, Laudanna C, Ceccarelli M, Falco G, Rizzuto A, Viglietto G.

Oncotarget. 2017 Mar 21;8(12):19172-19191. doi: 10.18632/oncotarget.13432.


The singular behavior of a β-type semi-synthetic two branched polypeptide: three-dimensional structure and mode of action.

Manzo G, Serra I, Pira A, Pintus M, Ceccarelli M, Casu M, Rinaldi AC, Scorciapino MA.

Phys Chem Chem Phys. 2016 Nov 16;18(45):30998-31011.


MOMP from Campylobacter jejuni Is a Trimer of 18-Stranded β-Barrel Monomers with a Ca2+ Ion Bound at the Constriction Zone.

Ferrara LGM, Wallat GD, Moynié L, Dhanasekar NN, Aliouane S, Acosta-Gutiérrez S, Pagès JM, Bolla JM, Winterhalter M, Ceccarelli M, Naismith JH.

J Mol Biol. 2016 Nov 6;428(22):4528-4543. doi: 10.1016/j.jmb.2016.09.021. Epub 2016 Sep 30.

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