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Items: 1 to 50 of 86

1.

Hybrid Vibrio cholerae El Tor lacking SXT identified as the cause of a cholera outbreak in the Philippines.

Klinzing DC, Choi SY, Hasan NA, Matias RR, Tayag E, Geronimo J, Skowronski E, Rashed SM, Kawashima K, Rosenzweig CN, Gibbons HS, Torres BC, Liles V, Alfon AC, Juan ML, Natividad FF, Cebula TA, Colwell RR.

MBio. 2015 Apr 21;6(2). pii: e00047-15. doi: 10.1128/mBio.00047-15.

2.

Concordance and discordance of sequence survey methods for molecular epidemiology.

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA.

PeerJ. 2015 Feb 17;3:e761. doi: 10.7717/peerj.761. eCollection 2015.

3.
4.

Microbial community profiling of human saliva using shotgun metagenomic sequencing.

Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AS, Bornman DM, Faith SA, Choi SY, Dickens ML, Cebula TA, Colwell RR.

PLoS One. 2014 May 20;9(5):e97699. doi: 10.1371/journal.pone.0097699. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e106124.

5.

Genomic and phenotypic characterization of Vibrio cholerae non-O1 isolates from a US Gulf Coast cholera outbreak.

Haley BJ, Choi SY, Grim CJ, Onifade TJ, Cinar HN, Tall BD, Taviani E, Hasan NA, Abdullah AH, Carter L, Sahu SN, Kothary MH, Chen A, Baker R, Hutchinson R, Blackmore C, Cebula TA, Huq A, Colwell RR.

PLoS One. 2014 Apr 3;9(4):e86264. doi: 10.1371/journal.pone.0086264. eCollection 2014.

6.

Genome Sequence of Escherichia coli O157:H7 Strain 2886-75, Associated with the First Reported Case of Human Infection in the United States.

Sanjar F, Hazen TH, Shah SM, Koenig SS, Agrawal S, Daugherty S, Sadzewicz L, Tallon LJ, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Cebula TA, Ravel J, Fraser CM, Rasko DA, Eppinger M.

Genome Announc. 2014 Jan 9;2(1). pii: e01120-13. doi: 10.1128/genomeA.01120-13.

7.

Genome Sequences of Clinical Vibrio cholerae Isolates from an Oyster-Borne Cholera Outbreak in Florida.

Haley BJ, Choi SY, Hasan NA, Abdullah AS, Cebula TA, Huq A, Colwell RR.

Genome Announc. 2013 Nov 21;1(6). pii: e00966-13. doi: 10.1128/genomeA.00966-13.

8.

Whole-Genome Draft Sequences of 26 Enterohemorrhagic Escherichia coli O157:H7 Strains.

Eppinger M, Daugherty S, Agrawal S, Galens K, Sengamalay N, Sadzewicz L, Tallon L, Cebula TA, Mammel MK, Feng P, Soderlund R, Tarr PI, Debroy C, Dudley EG, Fraser CM, Ravel J.

Genome Announc. 2013 Feb 28;1(2):e0013412. doi: 10.1128/genomeA.00134-12.

9.

Genomic diversity of 2010 Haitian cholera outbreak strains.

Hasan NA, Choi SY, Eppinger M, Clark PW, Chen A, Alam M, Haley BJ, Taviani E, Hine E, Su Q, Tallon LJ, Prosper JB, Furth K, Hoq MM, Li H, Fraser-Liggett CM, Cravioto A, Huq A, Ravel J, Cebula TA, Colwell RR.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):E2010-7. doi: 10.1073/pnas.1207359109. Epub 2012 Jun 18.

10.

Genomic anatomy of Escherichia coli O157:H7 outbreaks.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20142-7. doi: 10.1073/pnas.1107176108. Epub 2011 Nov 30.

11.

Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies.

Jackson SA, Patel IR, Barnaba T, LeClerc JE, Cebula TA.

BMC Genomics. 2011 Jul 6;12:349. doi: 10.1186/1471-2164-12-349.

12.

Comparative genomics of 28 Salmonella enterica isolates: evidence for CRISPR-mediated adaptive sublineage evolution.

Fricke WF, Mammel MK, McDermott PF, Tartera C, White DG, Leclerc JE, Ravel J, Cebula TA.

J Bacteriol. 2011 Jul;193(14):3556-68. doi: 10.1128/JB.00297-11. Epub 2011 May 20.

13.

Genome signatures of Escherichia coli O157:H7 isolates from the bovine host reservoir.

Eppinger M, Mammel MK, Leclerc JE, Ravel J, Cebula TA.

Appl Environ Microbiol. 2011 May;77(9):2916-25. doi: 10.1128/AEM.02554-10. Epub 2011 Mar 18.

14.

Genomic characterization of asymptomatic Escherichia coli isolated from the neobladder.

Sahl JW, Lloyd AL, Redman JC, Cebula TA, Wood DP, Mobley HL, Rasko DA.

Microbiology. 2011 Apr;157(Pt 4):1088-102. doi: 10.1099/mic.0.043018-0. Epub 2011 Jan 20.

PMID:
21252277
15.

A microarray based approach for the identification of common foodborne viruses.

Ayodeji M, Kulka M, Jackson SA, Patel I, Mammel M, Cebula TA, Goswami BB.

Open Virol J. 2009 Mar 19;3:7-20. doi: 10.2174/1874357900903010007.

16.

Antimicrobial resistance-conferring plasmids with similarity to virulence plasmids from avian pathogenic Escherichia coli strains in Salmonella enterica serovar Kentucky isolates from poultry.

Fricke WF, McDermott PF, Mammel MK, Zhao S, Johnson TJ, Rasko DA, Fedorka-Cray PJ, Pedroso A, Whichard JM, Leclerc JE, White DG, Cebula TA, Ravel J.

Appl Environ Microbiol. 2009 Sep;75(18):5963-71. doi: 10.1128/AEM.00786-09. Epub 2009 Jul 31.

17.

Comparative genomics of the IncA/C multidrug resistance plasmid family.

Fricke WF, Welch TJ, McDermott PF, Mammel MK, LeClerc JE, White DG, Cebula TA, Ravel J.

J Bacteriol. 2009 Aug;191(15):4750-7. doi: 10.1128/JB.00189-09. Epub 2009 May 29.

18.

Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak.

Kotewicz ML, Mammel MK, LeClerc JE, Cebula TA.

Microbiology. 2008 Nov;154(Pt 11):3518-28. doi: 10.1099/mic.0.2008/019026-0.

PMID:
18957604
19.

Altered utilization of N-acetyl-D-galactosamine by Escherichia coli O157:H7 from the 2006 spinach outbreak.

Mukherjee A, Mammel MK, LeClerc JE, Cebula TA.

J Bacteriol. 2008 Mar;190(5):1710-7. Epub 2007 Dec 21.

20.

Optical maps distinguish individual strains of Escherichia coli O157 : H7.

Kotewicz ML, Jackson SA, LeClerc JE, Cebula TA.

Microbiology. 2007 Jun;153(Pt 6):1720-33.

PMID:
17526830
21.

Multiple antimicrobial resistance in plague: an emerging public health risk.

Welch TJ, Fricke WF, McDermott PF, White DG, Rosso ML, Rasko DA, Mammel MK, Eppinger M, Rosovitz MJ, Wagner D, Rahalison L, Leclerc JE, Hinshaw JM, Lindler LE, Cebula TA, Carniel E, Ravel J.

PLoS One. 2007 Mar 21;2(3):e309.

22.

Quality sample collection, handling, and preservation for an effective microbial forensics program.

Budowle B, Schutzer SE, Burans JP, Beecher DJ, Cebula TA, Chakraborty R, Cobb WT, Fletcher J, Hale ML, Harris RB, Heitkamp MA, Keller FP, Kuske C, Leclerc JE, Marrone BL, McKenna TS, Morse SA, Rodriguez LL, Valentine NB, Yadev J.

Appl Environ Microbiol. 2006 Oct;72(10):6431-8. No abstract available.

23.

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.

MAQC Consortium, Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, Collins PJ, de Longueville F, Kawasaki ES, Lee KY, Luo Y, Sun YA, Willey JC, Setterquist RA, Fischer GM, Tong W, Dragan YP, Dix DJ, Frueh FW, Goodsaid FM, Herman D, Jensen RV, Johnson CD, Lobenhofer EK, Puri RK, Schrf U, Thierry-Mieg J, Wang C, Wilson M, Wolber PK, Zhang L, Amur S, Bao W, Barbacioru CC, Lucas AB, Bertholet V, Boysen C, Bromley B, Brown D, Brunner A, Canales R, Cao XM, Cebula TA, Chen JJ, Cheng J, Chu TM, Chudin E, Corson J, Corton JC, Croner LJ, Davies C, Davison TS, Delenstarr G, Deng X, Dorris D, Eklund AC, Fan XH, Fang H, Fulmer-Smentek S, Fuscoe JC, Gallagher K, Ge W, Guo L, Guo X, Hager J, Haje PK, Han J, Han T, Harbottle HC, Harris SC, Hatchwell E, Hauser CA, Hester S, Hong H, Hurban P, Jackson SA, Ji H, Knight CR, Kuo WP, LeClerc JE, Levy S, Li QZ, Liu C, Liu Y, Lombardi MJ, Ma Y, Magnuson SR, Maqsodi B, McDaniel T, Mei N, Myklebost O, Ning B, Novoradovskaya N, Orr MS, Osborn TW, Papallo A, Patterson TA, Perkins RG, Peters EH, Peterson R, Philips KL, Pine PS, Pusztai L, Qian F, Ren H, Rosen M, Rosenzweig BA, Samaha RR, Schena M, Schroth GP, Shchegrova S, Smith DD, Staedtler F, Su Z, Sun H, Szallasi Z, Tezak Z, Thierry-Mieg D, Thompson KL, Tikhonova I, Turpaz Y, Vallanat B, Van C, Walker SJ, Wang SJ, Wang Y, Wolfinger R, Wong A, Wu J, Xiao C, Xie Q, Xu J, Yang W, Zhang L, Zhong S, Zong Y, Slikker W Jr.

Nat Biotechnol. 2006 Sep;24(9):1151-61.

24.

Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays.

Jackson SA, Mammel MK, Patel IR, Mays T, Albert TJ, LeClerc JE, Cebula TA.

Forensic Sci Int. 2007 May 24;168(2-3):183-99. Epub 2006 Aug 28.

PMID:
16934953
25.

Exploring genotypic and phenotypic diversity of microbes using microarray approaches.

Mukherjee A, Jackson SA, Leclerc JE, Cebula TA.

Toxicol Mech Methods. 2006;16(2-3):121-8. doi: 10.1080/15376520600558473.

PMID:
20021003
26.

Structure and distribution of the phosphoprotein phosphatase genes, prpA and prpB, among Shigella subgroups.

Li B, Brown EW, D'Agostino C, Leclerc JE, Cebula TA.

Microbiology. 2005 Aug;151(Pt 8):2671-83.

PMID:
16079345
27.

Chips and SNPs, bugs and thugs: a molecular sleuthing perspective.

Cebula TA, Jackson SA, Brown EW, Goswami B, LeClerc JE.

J Food Prot. 2005 Jun;68(6):1271-84. Review.

PMID:
15954721
28.

Molecular applications for identifying microbial pathogens in the post-9/11 era.

Cebula TA, Brown EW, Jackson SA, Mammel MK, Mukherjee A, LeClerc JE.

Expert Rev Mol Diagn. 2005 May;5(3):431-45. Review.

PMID:
15934819
30.
31.

Use of reverse transcription and PCR to discriminate between infectious and non-infectious hepatitis A virus.

Bhattacharya SS, Kulka M, Lampel KA, Cebula TA, Goswami BB.

J Virol Methods. 2004 Mar 15;116(2):181-7.

PMID:
14738986
32.

Limited boundaries for extensive horizontal gene transfer among Salmonella pathogens.

Brown EW, Mammel MK, LeClerc JE, Cebula TA.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15676-81. Epub 2003 Dec 11.

33.

The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli.

Sahu SN, Acharya S, Tuminaro H, Patel I, Dudley K, LeClerc JE, Cebula TA, Mukhopadhyay S.

Mol Cell Biochem. 2003 Nov;253(1-2):167-77.

PMID:
14619967
34.

Searching for keys under the devil's lamppost.

Brown EW, LeClerc JE, Cebula TA.

Trends Microbiol. 2003 Oct;11(10):454-6. No abstract available.

PMID:
14557027
35.

The cytopathic 18f strain of Hepatitis A virus induces RNA degradation in FrhK4 cells.

Kulka M, Chen A, Ngo D, Bhattacharya SS, Cebula TA, Goswami BB.

Arch Virol. 2003 Jul;148(7):1275-300.

PMID:
12827461
36.

Molecular analysis of mutS expression and mutation in natural isolates of pathogenic Escherichia coli.

Li B, Tsui HC, LeClerc JE, Dey M, Winkler ME, Cebula TA.

Microbiology. 2003 May;149(Pt 5):1323-31.

PMID:
12724393
37.

Genomic variability among enteric pathogens: the case of the mutS-rpoS intergenic region.

Kotewicz ML, Brown EW, Eugene LeClerc J, Cebula TA.

Trends Microbiol. 2003 Jan;11(1):2-6.

PMID:
12526846
38.

Evolution of multi-gene segments in the mutS-rpoS intergenic region of Salmonella enterica serovar Typhimurium LT2.

Kotewicz ML, Li B, Levy DD, LeClerc JE, Shifflet AW, Cebula TA.

Microbiology. 2002 Aug;148(Pt 8):2531-40.

PMID:
12177346
39.

Detection of recombination among Salmonella enterica strains using the incongruence length difference test.

Brown EW, Kotewicz ML, Cebula TA.

Mol Phylogenet Evol. 2002 Jul;24(1):102-20.

PMID:
12128032
40.

A polymerase chain reaction-based method for the detection of hepatitis A virus in produce and shellfish.

Goswami BB, Kulka M, Ngo D, Istafanos P, Cebula TA.

J Food Prot. 2002 Feb;65(2):393-402.

PMID:
11858194
41.

Three R's of bacterial evolution: how replication, repair, and recombination frame the origin of species.

Brown EW, LeClerc JE, Kotewicz ML, Cebula TA.

Environ Mol Mutagen. 2001;38(2-3):248-60. Review.

PMID:
11746762
42.

Fidelity of replication of repetitive DNA in mutS and repair proficient Escherichia coli.

Levy DD, Cebula TA.

Mutat Res. 2001 Mar 1;474(1-2):1-14.

PMID:
11239958
43.

A prelude to debate--The utility of transgenic assays in the detection and interpretation of carcinogenic responses.

Cebula TA, Hoffmann GR.

Environ Mol Mutagen. 2001;37(1):85. No abstract available.

PMID:
11170245
44.

Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains.

Brown EW, LeClerc JE, Li B, Payne WL, Cebula TA.

J Bacteriol. 2001 Mar;183(5):1631-44.

45.

Acknowledgments, abilities, and anticipation

Cebula TA.

Environ Mol Mutagen. 2000;36(4):339-40. No abstract available.

PMID:
11152568
46.

Pseudomonas survival strategies in cystic fibrosis.

LeClerc JE, Cebula TA.

Science. 2000 Jul 21;289(5478):391-2. No abstract available.

PMID:
10939947
47.

Cancer assays, transgenics, and surrogates: an editorial introduction.

Cebula TA, Hoffmann GR.

Environ Mol Mutagen. 1999;34(4):233. No abstract available.

PMID:
10618170
48.

Promiscuous origin of a chimeric sequence in the Escherichia coli O157:H7 genome.

LeClerc JE, Li B, Payne WL, Cebula TA.

J Bacteriol. 1999 Dec;181(24):7614-7.

49.

An Editor's thank You

Cebula TA.

Environ Mol Mutagen. 1999;34(2-3):69. No abstract available.

PMID:
10529726
50.

Mutagenesis patterns in a tRNA mutation marker gene altered to include repetitive sequence replicated in mutS E. coli.

Levy DD, Cebula TA.

Ann N Y Acad Sci. 1999 May 18;870:392-5. No abstract available.

PMID:
10415506

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