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Items: 1 to 50 of 67

1.

Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM.

PLoS One. 2019 Jul 23;14(7):e0220347. doi: 10.1371/journal.pone.0220347. eCollection 2019.

2.

Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.

Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM.

PLoS One. 2019 Jun 17;14(6):e0217804. doi: 10.1371/journal.pone.0217804. eCollection 2019. Erratum in: PLoS One. 2019 Jul 23;14(7):e0220347.

3.

Transmission strategies in a chemosynthetic symbiosis: detection and quantification of symbionts in host tissues and their environment.

Russell SL, McCartney E, Cavanaugh CM.

Proc Biol Sci. 2018 Oct 31;285(1890). pii: 20182157. doi: 10.1098/rspb.2018.2157.

PMID:
30381385
4.

Isotope discrimination by form IC RubisCO from Ralstonia eutropha and Rhodobacter sphaeroides, metabolically versatile members of 'Proteobacteria' from aquatic and soil habitats.

Thomas PJ, Boller AJ, Satagopan S, Tabita FR, Cavanaugh CM, Scott KM.

Environ Microbiol. 2019 Jan;21(1):72-80. doi: 10.1111/1462-2920.14423. Epub 2018 Nov 21.

PMID:
30246324
5.

Diverse Legionella-Like Bacteria Associated with Testate Amoebae of the Genus Arcella (Arcellinida: Amoebozoa).

Gomaa F, Gersh M, Cavanaugh CM.

J Eukaryot Microbiol. 2018 Jul;65(5):661-668. doi: 10.1111/jeu.12511. Epub 2018 Mar 7.

PMID:
29443446
6.

Intrahost Genetic Diversity of Bacterial Symbionts Exhibits Evidence of Mixed Infections and Recombinant Haplotypes.

Russell SL, Cavanaugh CM.

Mol Biol Evol. 2017 Nov 1;34(11):2747-2761. doi: 10.1093/molbev/msx188.

PMID:
29106592
7.

Mixed transmission modes and dynamic genome evolution in an obligate animal-bacterial symbiosis.

Russell SL, Corbett-Detig RB, Cavanaugh CM.

ISME J. 2017 Jun;11(6):1359-1371. doi: 10.1038/ismej.2017.10. Epub 2017 Feb 24.

8.

Evidentiary, extraevidentiary, and deliberation process predictors of real jury verdicts.

Devine DJ, Krouse PC, Cavanaugh CM, Basora JC.

Law Hum Behav. 2016 Dec;40(6):670-682. Epub 2016 Sep 5.

PMID:
27598561
9.

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis.

Dmytrenko O, Russell SL, Loo WT, Fontanez KM, Liao L, Roeselers G, Sharma R, Stewart FJ, Newton IL, Woyke T, Wu D, Lang JM, Eisen JA, Cavanaugh CM.

BMC Genomics. 2014 Oct 23;15:924. doi: 10.1186/1471-2164-15-924.

10.

Isotopic discrimination and kinetic parameters of RubisCO from the marine bloom-forming diatom, Skeletonema costatum.

Boller AJ, Thomas PJ, Cavanaugh CM, Scott KM.

Geobiology. 2015 Jan;13(1):33-43. doi: 10.1111/gbi.12112. Epub 2014 Oct 10.

PMID:
25302659
11.

Evidence for horizontal transmission from multilocus phylogeny of deep-sea mussel (Mytilidae) symbionts.

Fontanez KM, Cavanaugh CM.

Environ Microbiol. 2014 Dec;16(12):3608-21. doi: 10.1111/1462-2920.12379. Epub 2014 Feb 20.

PMID:
24428587
12.

Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae.

Liao L, Wankel SD, Wu M, Cavanaugh CM, Girguis PR.

Mol Ecol. 2014 Mar;23(6):1544-57. doi: 10.1111/mec.12460. Epub 2013 Nov 18.

PMID:
24237389
13.

The methanol dehydrogenase gene, mxaF, as a functional and phylogenetic marker for proteobacterial methanotrophs in natural environments.

Lau E, Fisher MC, Steudler PA, Cavanaugh CM.

PLoS One. 2013;8(2):e56993. doi: 10.1371/journal.pone.0056993. Epub 2013 Feb 22.

14.

Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum.

Stewart FJ, Dmytrenko O, Delong EF, Cavanaugh CM.

Front Microbiol. 2011 Jun 20;2:134. doi: 10.3389/fmicb.2011.00134. eCollection 2011.

15.

Phylogenetic characterization of episymbiotic bacteria hosted by a hydrothermal vent limpet (lepetodrilidae, vetigastropoda).

Bates AE, Harmer TL, Roeselers G, Cavanaugh CM.

Biol Bull. 2011 Apr;220(2):118-27.

PMID:
21551448
16.

Evidence for a core gut microbiota in the zebrafish.

Roeselers G, Mittge EK, Stephens WZ, Parichy DM, Cavanaugh CM, Guillemin K, Rawls JF.

ISME J. 2011 Oct;5(10):1595-608. doi: 10.1038/ismej.2011.38. Epub 2011 Apr 7.

17.

Complete genome sequence of Candidatus Ruthia magnifica.

Roeselers G, Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, Cavanaugh CM.

Stand Genomic Sci. 2010 Oct 27;3(2):163-73. doi: 10.4056/sigs.1103048.

18.

16S rRNA phylogenetic analysis and quantification of Korarchaeota indigenous to the hot springs of Kamchatka, Russia.

Auchtung TA, Shyndriayeva G, Cavanaugh CM.

Extremophiles. 2011 Jan;15(1):105-16. doi: 10.1007/s00792-010-0340-5. Epub 2010 Dec 12.

PMID:
21153671
19.

Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.

Guss AM, Roeselers G, Newton IL, Young CR, Klepac-Ceraj V, Lory S, Cavanaugh CM.

ISME J. 2011 Jan;5(1):20-9. doi: 10.1038/ismej.2010.88. Epub 2010 Jul 15.

20.

Genetic subdivision of chemosynthetic endosymbionts of Solemya velum along the Southern New England coast.

Stewart FJ, Baik AH, Cavanaugh CM.

Appl Environ Microbiol. 2009 Sep;75(18):6005-7. doi: 10.1128/AEM.00689-09. Epub 2009 Jul 24.

21.

Pyrosequencing analysis of endosymbiont population structure: co-occurrence of divergent symbiont lineages in a single vesicomyid host clam.

Stewart FJ, Cavanaugh CM.

Environ Microbiol. 2009 Aug;11(8):2136-47. doi: 10.1111/j.1462-2920.2009.01933.x. Epub 2009 Apr 21.

PMID:
19397674
22.

Evidence for homologous recombination in intracellular chemosynthetic clam symbionts.

Stewart FJ, Young CR, Cavanaugh CM.

Mol Biol Evol. 2009 Jun;26(6):1391-404. doi: 10.1093/molbev/msp049. Epub 2009 Mar 16.

PMID:
19289597
23.

Comparative genomics of vesicomyid clam (Bivalvia: Mollusca) chemosynthetic symbionts.

Newton IL, Girguis PR, Cavanaugh CM.

BMC Genomics. 2008 Dec 4;9:585. doi: 10.1186/1471-2164-9-585.

24.

Quantifying nonspecific TEM beta-lactamase (blaTEM) genes in a wastewater stream.

Lachmayr KL, Kerkhof LJ, Dirienzo AG, Cavanaugh CM, Ford TE.

Appl Environ Microbiol. 2009 Jan;75(1):203-11. doi: 10.1128/AEM.01254-08. Epub 2008 Nov 7.

25.

Free-living tube worm endosymbionts found at deep-sea vents.

Harmer TL, Rotjan RD, Nussbaumer AD, Bright M, Ng AW, DeChaine EG, Cavanaugh CM.

Appl Environ Microbiol. 2008 Jun;74(12):3895-8. doi: 10.1128/AEM.02470-07. Epub 2008 Apr 11.

26.

Lateral symbiont acquisition in a maternally transmitted chemosynthetic clam endosymbiosis.

Stewart FJ, Young CR, Cavanaugh CM.

Mol Biol Evol. 2008 Apr;25(4):673-87. doi: 10.1093/molbev/msn010. Epub 2008 Jan 12.

PMID:
18192696
27.

Intragenomic variation and evolution of the internal transcribed spacer of the rRNA operon in bacteria.

Stewart FJ, Cavanaugh CM.

J Mol Evol. 2007 Jul;65(1):44-67. Epub 2007 Jun 12.

PMID:
17568983
28.

Molecular characterization of methanotrophic communities in forest soils that consume atmospheric methane.

Lau E, Ahmad A, Steudler PA, Cavanaugh CM.

FEMS Microbiol Ecol. 2007 Jun;60(3):490-500. Epub 2007 Mar 28.

29.

The Calyptogena magnifica chemoautotrophic symbiont genome.

Newton IL, Woyke T, Auchtung TA, Dilly GF, Dutton RJ, Fisher MC, Fontanez KM, Lau E, Stewart FJ, Richardson PM, Barry KW, Saunders E, Detter JC, Wu D, Eisen JA, Cavanaugh CM.

Science. 2007 Feb 16;315(5814):998-1000.

30.

CO2 uptake and fixation by endosymbiotic chemoautotrophs from the bivalve Solemya velum.

Scott KM, Cavanaugh CM.

Appl Environ Microbiol. 2007 Feb;73(4):1174-9. Epub 2006 Dec 8.

31.

Bacterial endosymbioses in Solemya (Mollusca: Bivalvia)--model systems for studies of symbiont-host adaptation.

Stewart FJ, Cavanaugh CM.

Antonie Van Leeuwenhoek. 2006 Nov;90(4):343-60. Epub 2006 Oct 7. Review.

PMID:
17028934
32.
33.

A dual symbiosis shared by two mussel species, Bathymodiolus azoricus and Bathymodiolus puteoserpentis (Bivalvia: Mytilidae), from hydrothermal vents along the northern Mid-Atlantic Ridge.

Duperron S, Bergin C, Zielinski F, Blazejak A, Pernthaler A, McKiness ZP, DeChaine E, Cavanaugh CM, Dubilier N.

Environ Microbiol. 2006 Aug;8(8):1441-7.

PMID:
16872406
34.

16S rRNA phylogenetic investigation of the candidate division "Korarchaeota".

Auchtung TA, Takacs-Vesbach CD, Cavanaugh CM.

Appl Environ Microbiol. 2006 Jul;72(7):5077-82.

35.

Symbioses of methanotrophs and deep-sea mussels (Mytilidae: Bathymodiolinae).

DeChaine EG, Cavanaugh CM.

Prog Mol Subcell Biol. 2006;41:227-49.

PMID:
16623396
36.

Symbiosis of thioautotrophic bacteria with Riftia pachyptila.

Stewart FJ, Cavanaugh CM.

Prog Mol Subcell Biol. 2006;41:197-225. Review. No abstract available.

PMID:
16623395
37.

The evolutionary diversification of cyanobacteria: molecular-phylogenetic and paleontological perspectives.

Tomitani A, Knoll AH, Cavanaugh CM, Ohno T.

Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5442-7. Epub 2006 Mar 28.

38.

Chemosynthetic endosymbioses: adaptations to oxic-anoxic interfaces.

Stewart FJ, Newton IL, Cavanaugh CM.

Trends Microbiol. 2005 Sep;13(9):439-48. Review.

PMID:
16054816
39.

Phylogenetic analyses of the core antenna domain: investigating the origin of photosystem I.

Mix LJ, Haig D, Cavanaugh CM.

J Mol Evol. 2005 Feb;60(2):153-63.

PMID:
15785845
40.
41.

Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO.

Schwedock J, Harmer TL, Scott KM, Hektor HJ, Seitz AP, Fontana MC, Distel DL, Cavanaugh CM.

Arch Microbiol. 2004 Sep;182(1):18-29. Epub 2004 Jul 28.

PMID:
15316720
42.
43.
44.

Population Dynamics of Two Toluene Degrading Bacterial Species in a Contaminated Stream.

Tay ST, Hemond FH, Krumholz LR, Cavanaugh CM, Polz MF.

Microb Ecol. 2001 Feb;41(2):124-131.

PMID:
12032617
45.

Characterization of an autotrophic sulfide-oxidizing marine Arcobacter sp. that produces filamentous sulfur.

Wirsen CO, Sievert SM, Cavanaugh CM, Molyneaux SJ, Ahmad A, Taylor LT, DeLong EF, Taylor CD.

Appl Environ Microbiol. 2002 Jan;68(1):316-25.

46.

Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria.

Gulledge J, Ahmad A, Steudler PA, Pomerantz WJ, Cavanaugh CM.

Appl Environ Microbiol. 2001 Oct;67(10):4726-33.

47.

Biogeography and ecological setting of Indian Ocean hydrothermal vents.

Van Dover CL, Humphris SE, Fornari D, Cavanaugh CM, Collier R, Goffredi SK, Hashimoto J, Lilley MD, Reysenbach AL, Shank TM, Von Damm KL, Banta A, Gallant RM, Gotz D, Green D, Hall J, Harmer TL, Hurtado LA, Johnson P, McKiness ZP, Meredith C, Olson E, Pan IL, Turnipseed M, Won Y, Young CR 3rd, Vrijenhoek RC.

Science. 2001 Oct 26;294(5543):818-23. Epub 2001 Sep 13.

48.

Empirical midpoint dissociation temperature (Td) determination for oligonucleotide probes using a PCR thermal cycler.

Gulledge J, Cavanaugh CM.

Biotechniques. 1999 Oct;27(4):666-8, 670. No abstract available.

49.

Diversity and heterogeneity of epibiotic bacterial communities on the marine nematode Eubostrichus dianae.

Polz MF, Harbison C, Cavanaugh CM.

Appl Environ Microbiol. 1999 Sep;65(9):4271-5.

50.

Importance of Xanthobacter autotrophicus in toluene biodegradation within a contaminated stream.

Tay ST, Hemond HF, Polz MF, Cavanaugh CM, Krumholz LR.

Syst Appl Microbiol. 1999 Feb;22(1):113-8.

PMID:
10188284

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