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Items: 26

1.

Distinct Classes of Chromatin Loops Revealed by Deletion of an RNA-Binding Region in CTCF.

Hansen AS, Hsieh TS, Cattoglio C, Pustova I, Saldaña-Meyer R, Reinberg D, Darzacq X, Tjian R.

Mol Cell. 2019 Nov 7;76(3):395-411.e13. doi: 10.1016/j.molcel.2019.07.039. Epub 2019 Sep 12.

PMID:
31522987
2.

Determining cellular CTCF and cohesin abundances to constrain 3D genome models.

Cattoglio C, Pustova I, Walther N, Ho JJ, Hantsche-Grininger M, Inouye CJ, Hossain MJ, Dailey GM, Ellenberg J, Darzacq X, Tjian R, Hansen AS.

Elife. 2019 Jun 17;8. pii: e40164. doi: 10.7554/eLife.40164.

3.

A complex between DYRK1A and DCAF7 phosphorylates the C-terminal domain of RNA polymerase II to promote myogenesis.

Yu D, Cattoglio C, Xue Y, Zhou Q.

Nucleic Acids Res. 2019 May 21;47(9):4462-4475. doi: 10.1093/nar/gkz162.

4.

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.

Chong S, Dugast-Darzacq C, Liu Z, Dong P, Dailey GM, Cattoglio C, Heckert A, Banala S, Lavis L, Darzacq X, Tjian R.

Science. 2018 Jul 27;361(6400). pii: eaar2555. doi: 10.1126/science.aar2555. Epub 2018 Jun 21.

PMID:
29930090
5.

Recent evidence that TADs and chromatin loops are dynamic structures.

Hansen AS, Cattoglio C, Darzacq X, Tjian R.

Nucleus. 2018 Jan 1;9(1):20-32. doi: 10.1080/19491034.2017.1389365. Epub 2017 Dec 14. Review.

6.

A dynamic interplay of enhancer elements regulates Klf4 expression in naïve pluripotency.

Xie L, Torigoe SE, Xiao J, Mai DH, Li L, Davis FP, Dong P, Marie-Nelly H, Grimm J, Lavis L, Darzacq X, Cattoglio C, Liu Z, Tjian R.

Genes Dev. 2017 Sep 1;31(17):1795-1808. doi: 10.1101/gad.303321.117.

7.

Regulation of DNA demethylation by the XPC DNA repair complex in somatic and pluripotent stem cells.

Ho JJ, Cattoglio C, McSwiggen DT, Tjian R, Fong YW.

Genes Dev. 2017 Apr 15;31(8):830-844. doi: 10.1101/gad.295741.116.

8.

CTCF and cohesin regulate chromatin loop stability with distinct dynamics.

Hansen AS, Pustova I, Cattoglio C, Tjian R, Darzacq X.

Elife. 2017 May 3;6. pii: e25776. doi: 10.7554/eLife.25776.

9.

Functional and mechanistic studies of XPC DNA-repair complex as transcriptional coactivator in embryonic stem cells.

Cattoglio C, Zhang ET, Grubisic I, Chiba K, Fong YW, Tjian R.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):E2317-26. doi: 10.1073/pnas.1505569112. Epub 2015 Apr 21.

10.

Genomic analysis of Sleeping Beauty transposon integration in human somatic cells.

Turchiano G, Latella MC, Gogol-Döring A, Cattoglio C, Mavilio F, Izsvák Z, Ivics Z, Recchia A.

PLoS One. 2014 Nov 12;9(11):e112712. doi: 10.1371/journal.pone.0112712. eCollection 2014.

11.

Looping back to leap forward: transcription enters a new era.

Levine M, Cattoglio C, Tjian R.

Cell. 2014 Mar 27;157(1):13-25. doi: 10.1016/j.cell.2014.02.009. Review.

12.

The intertwined roles of transcription and repair proteins.

Fong YW, Cattoglio C, Tjian R.

Mol Cell. 2013 Nov 7;52(3):291-302. doi: 10.1016/j.molcel.2013.10.018. Review.

13.

Transcriptional regulation by coactivators in embryonic stem cells.

Fong YW, Cattoglio C, Yamaguchi T, Tjian R.

Trends Cell Biol. 2012 Jun;22(6):292-8. doi: 10.1016/j.tcb.2012.04.002. Epub 2012 May 7. Review.

14.

Lentiviral vector integration in the human genome induces alternative splicing and generates aberrant transcripts.

Moiani A, Paleari Y, Sartori D, Mezzadra R, Miccio A, Cattoglio C, Cocchiarella F, Lidonnici MR, Ferrari G, Mavilio F.

J Clin Invest. 2012 May;122(5):1653-66. doi: 10.1172/JCI61852. Epub 2012 Apr 23.

15.

Estimated comparative integration hotspots identify different behaviors of retroviral gene transfer vectors.

Ambrosi A, Glad IK, Pellin D, Cattoglio C, Mavilio F, Di Serio C, Frigessi A.

PLoS Comput Biol. 2011 Dec;7(12):e1002292. doi: 10.1371/journal.pcbi.1002292. Epub 2011 Dec 1.

16.

A DNA repair complex functions as an Oct4/Sox2 coactivator in embryonic stem cells.

Fong YW, Inouye C, Yamaguchi T, Cattoglio C, Grubisic I, Tjian R.

Cell. 2011 Sep 30;147(1):120-31. doi: 10.1016/j.cell.2011.08.038.

17.

Insertion sites in engrafted cells cluster within a limited repertoire of genomic areas after gammaretroviral vector gene therapy.

Deichmann A, Brugman MH, Bartholomae CC, Schwarzwaelder K, Verstegen MM, Howe SJ, Arens A, Ott MG, Hoelzer D, Seger R, Grez M, Hacein-Bey-Abina S, Cavazzana-Calvo M, Fischer A, Paruzynski A, Gabriel R, Glimm H, Abel U, Cattoglio C, Mavilio F, Cassani B, Aiuti A, Dunbar CE, Baum C, Gaspar HB, Thrasher AJ, von Kalle C, Schmidt M, Wagemaker G.

Mol Ther. 2011 Nov;19(11):2031-9. doi: 10.1038/mt.2011.178. Epub 2011 Aug 23.

18.

Correction of murine SCID-X1 by lentiviral gene therapy using a codon-optimized IL2RG gene and minimal pretransplant conditioning.

Huston MW, van Til NP, Visser TP, Arshad S, Brugman MH, Cattoglio C, Nowrouzi A, Li Y, Schambach A, Schmidt M, Baum C, von Kalle C, Mavilio F, Zhang F, Blundell MP, Thrasher AJ, Verstegen MM, Wagemaker G.

Mol Ther. 2011 Oct;19(10):1867-77. doi: 10.1038/mt.2011.127. Epub 2011 Jul 12.

19.

High-definition mapping of retroviral integration sites defines the fate of allogeneic T cells after donor lymphocyte infusion.

Cattoglio C, Maruggi G, Bartholomae C, Malani N, Pellin D, Cocchiarella F, Magnani Z, Ciceri F, Ambrosi A, von Kalle C, Bushman FD, Bonini C, Schmidt M, Mavilio F, Recchia A.

PLoS One. 2010 Dec 22;5(12):e15688. doi: 10.1371/journal.pone.0015688.

20.

High-definition mapping of retroviral integration sites identifies active regulatory elements in human multipotent hematopoietic progenitors.

Cattoglio C, Pellin D, Rizzi E, Maruggi G, Corti G, Miselli F, Sartori D, Guffanti A, Di Serio C, Ambrosi A, De Bellis G, Mavilio F.

Blood. 2010 Dec 16;116(25):5507-17. doi: 10.1182/blood-2010-05-283523. Epub 2010 Sep 23.

PMID:
20864581
21.

Comprehensive genomic access to vector integration in clinical gene therapy.

Gabriel R, Eckenberg R, Paruzynski A, Bartholomae CC, Nowrouzi A, Arens A, Howe SJ, Recchia A, Cattoglio C, Wang W, Faber K, Schwarzwaelder K, Kirsten R, Deichmann A, Ball CR, Balaggan KS, Yáñez-Muñoz RJ, Ali RR, Gaspar HB, Biasco L, Aiuti A, Cesana D, Montini E, Naldini L, Cohen-Haguenauer O, Mavilio F, Thrasher AJ, Glimm H, von Kalle C, Saurin W, Schmidt M.

Nat Med. 2009 Dec;15(12):1431-6. doi: 10.1038/nm.2057. Epub 2009 Nov 22.

PMID:
19966782
22.

Transcriptional enhancers induce insertional gene deregulation independently from the vector type and design.

Maruggi G, Porcellini S, Facchini G, Perna SK, Cattoglio C, Sartori D, Ambrosi A, Schambach A, Baum C, Bonini C, Bovolenta C, Mavilio F, Recchia A.

Mol Ther. 2009 May;17(5):851-6. doi: 10.1038/mt.2009.51. Epub 2009 Mar 17.

23.

Transcription factor binding sites are genetic determinants of retroviral integration in the human genome.

Felice B, Cattoglio C, Cittaro D, Testa A, Miccio A, Ferrari G, Luzi L, Recchia A, Mavilio F.

PLoS One. 2009;4(2):e4571. doi: 10.1371/journal.pone.0004571. Epub 2009 Feb 24.

24.

Retroviral integration process in the human genome: is it really non-random? A new statistical approach.

Ambrosi A, Cattoglio C, Di Serio C.

PLoS Comput Biol. 2008 Aug 8;4(8):e1000144. doi: 10.1371/journal.pcbi.1000144.

25.

Long-term engraftment of single genetically modified human epidermal holoclones enables safety pre-assessment of cutaneous gene therapy.

Larcher F, Dellambra E, Rico L, Bondanza S, Murillas R, Cattoglio C, Mavilio F, Jorcano JL, Zambruno G, Del Rio M.

Mol Ther. 2007 Sep;15(9):1670-6. Epub 2007 Jun 19.

26.

Hot spots of retroviral integration in human CD34+ hematopoietic cells.

Cattoglio C, Facchini G, Sartori D, Antonelli A, Miccio A, Cassani B, Schmidt M, von Kalle C, Howe S, Thrasher AJ, Aiuti A, Ferrari G, Recchia A, Mavilio F.

Blood. 2007 Sep 15;110(6):1770-8. Epub 2007 May 16.

PMID:
17507662

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