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Items: 22


Selection, Linkage, and Population Structure Interact To Shape Genetic Variation Among Threespine Stickleback Genomes.

Nelson TC, Crandall JG, Ituarte CM, Catchen JM, Cresko WA.

Genetics. 2019 Aug;212(4):1367-1382. doi: 10.1534/genetics.119.302261. Epub 2019 Jun 18.


Antarctic blackfin icefish genome reveals adaptations to extreme environments.

Kim BM, Amores A, Kang S, Ahn DH, Kim JH, Kim IC, Lee JH, Lee SG, Lee H, Lee J, Kim HW, Desvignes T, Batzel P, Sydes J, Titus T, Wilson CA, Catchen JM, Warren WC, Schartl M, Detrich HW 3rd, Postlethwait JH, Park H.

Nat Ecol Evol. 2019 Mar;3(3):469-478. doi: 10.1038/s41559-019-0812-7. Epub 2019 Feb 25.


Hybridization and postzygotic isolation promote reinforcement of male mating preferences in a diverse group of fishes with traditional sex roles.

Moran RL, Zhou M, Catchen JM, Fuller RC.

Ecol Evol. 2018 Aug 24;8(18):9282-9294. doi: 10.1002/ece3.4434. eCollection 2018 Sep.


Deriving genotypes from RAD-seq short-read data using Stacks.

Rochette NC, Catchen JM.

Nat Protoc. 2017 Dec;12(12):2640-2659. doi: 10.1038/nprot.2017.123. Epub 2017 Nov 30.


Male and female contributions to behavioral isolation in darters as a function of genetic distance and color distance.

Moran RL, Zhou M, Catchen JM, Fuller RC.

Evolution. 2017 Oct;71(10):2428-2444. doi: 10.1111/evo.13321. Epub 2017 Sep 14.


Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations.

Catchen JM, Hohenlohe PA, Bernatchez L, Funk WC, Andrews KR, Allendorf FW.

Mol Ecol Resour. 2017 May;17(3):362-365. doi: 10.1111/1755-0998.12669. Epub 2017 Apr 11.


RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data.

Hoffberg SL, Kieran TJ, Catchen JM, Devault A, Faircloth BC, Mauricio R, Glenn TC.

Mol Ecol Resour. 2016 Sep;16(5):1264-78. doi: 10.1111/1755-0998.12566.


Retinoic acid metabolic genes, meiosis, and gonadal sex differentiation in zebrafish.

Rodríguez-Marí A, Cañestro C, BreMiller RA, Catchen JM, Yan YL, Postlethwait JH.

PLoS One. 2013 Sep 10;8(9):e73951. doi: 10.1371/journal.pone.0073951. eCollection 2013.


Replicate phylogenies and post-glacial range expansion of the pitcher-plant mosquito, Wyeomyia smithii, in North America.

Merz C, Catchen JM, Hanson-Smith V, Emerson KJ, Bradshaw WE, Holzapfel CM.

PLoS One. 2013 Sep 6;8(9):e72262. doi: 10.1371/journal.pone.0072262. eCollection 2013.


Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery.

Zhang G, Hoersch S, Amsterdam A, Whittaker CA, Beert E, Catchen JM, Farrington S, Postlethwait JH, Legius E, Hopkins N, Lees JA.

PLoS Genet. 2013 Aug;9(8):e1003734. doi: 10.1371/journal.pgen.1003734. Epub 2013 Aug 29.


Footprints in time: comparative quantitative trait loci mapping of the pitcher-plant mosquito, Wyeomyia smithii.

Bradshaw WE, Emerson KJ, Catchen JM, Cresko WA, Holzapfel CM.

Proc Biol Sci. 2012 Nov 22;279(1747):4551-8. doi: 10.1098/rspb.2012.1917. Epub 2012 Sep 26.


Stacks: building and genotyping Loci de novo from short-read sequences.

Catchen JM, Amores A, Hohenlohe P, Cresko W, Postlethwait JH.

G3 (Bethesda). 2011 Aug;1(3):171-82. doi: 10.1534/g3.111.000240. Epub 2011 Aug 1.


Conserved synteny and the zebrafish genome.

Catchen JM, Braasch I, Postlethwait JH.

Methods Cell Biol. 2011;104:259-85. doi: 10.1016/B978-0-12-374814-0.00015-X.


Genome-wide genetic marker discovery and genotyping using next-generation sequencing.

Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, Blaxter ML.

Nat Rev Genet. 2011 Jun 17;12(7):499-510. doi: 10.1038/nrg3012. Review.


Next-generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout.

Hohenlohe PA, Amish SJ, Catchen JM, Allendorf FW, Luikart G.

Mol Ecol Resour. 2011 Mar;11 Suppl 1:117-22. doi: 10.1111/j.1755-0998.2010.02967.x.


Resolving postglacial phylogeography using high-throughput sequencing.

Emerson KJ, Merz CR, Catchen JM, Hohenlohe PA, Cresko WA, Bradshaw WE, Holzapfel CM.

Proc Natl Acad Sci U S A. 2010 Sep 14;107(37):16196-200. doi: 10.1073/pnas.1006538107. Epub 2010 Aug 26.


UDP xylose synthase 1 is required for morphogenesis and histogenesis of the craniofacial skeleton.

Eames BF, Singer A, Smith GA, Wood ZA, Yan YL, He X, Polizzi SJ, Catchen JM, Rodriguez-Mari A, Linbo T, Raible DW, Postlethwait JH.

Dev Biol. 2010 May 15;341(2):400-15. doi: 10.1016/j.ydbio.2010.02.035. Epub 2010 Mar 11.


Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes.

Cañestro C, Catchen JM, Rodríguez-Marí A, Yokoi H, Postlethwait JH.

PLoS Genet. 2009 May;5(5):e1000496. doi: 10.1371/journal.pgen.1000496. Epub 2009 May 29.


Automated identification of conserved synteny after whole-genome duplication.

Catchen JM, Conery JS, Postlethwait JH.

Genome Res. 2009 Aug;19(8):1497-505. doi: 10.1101/gr.090480.108. Epub 2009 May 22.


Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation.

Yokoi H, Yan YL, Miller MR, BreMiller RA, Catchen JM, Johnson EA, Postlethwait JH.

Dev Biol. 2009 May 1;329(1):1-15. doi: 10.1016/j.ydbio.2009.01.002. Epub 2009 Jan 13.


Evolution of a new function by degenerative mutation in cephalochordate steroid receptors.

Bridgham JT, Brown JE, Rodríguez-Marí A, Catchen JM, Thornton JW.

PLoS Genet. 2008 Sep 12;4(9):e1000191. doi: 10.1371/journal.pgen.1000191.


Inferring ancestral gene order.

Catchen JM, Conery JS, Postlethwait JH.

Methods Mol Biol. 2008;452:365-83. doi: 10.1007/978-1-60327-159-2_17. Review.


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