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Items: 17


The microbial composition of dried fish prepared according to Greenlandic Inuit traditions and industrial counterparts.

Hauptmann AL, Paulová P, Castro-Mejía JL, Hansen LH, Sicheritz-Pontén T, Mulvad G, Nielsen DS.

Food Microbiol. 2020 Feb;85:103305. doi: 10.1016/ Epub 2019 Aug 13.


A Protocol for Extraction of Infective Viromes Suitable for Metagenomics Sequencing from Low Volume Fecal Samples.

Deng L, Silins R, Castro-Mejía JL, Kot W, Jessen L, Thorsen J, Shah S, Stokholm J, Bisgaard H, Moineau S, Nielsen DS.

Viruses. 2019 Jul 20;11(7). pii: E667. doi: 10.3390/v11070667.


Draft Genome Sequence of Streptococcus anginosus Strain CALM001, Isolated from the Gut of an Elderly Dane.

Ahmad HF, Schreiber L, Marshall IPG, Andersen PJ, Castro-Mejía JL, Nielsen DS.

Microbiol Resour Announc. 2019 Jun 13;8(24). pii: e00379-19. doi: 10.1128/MRA.00379-19.


Linking cocoa varietals and microbial diversity of Nicaraguan fine cocoa bean fermentations and their impact on final cocoa quality appreciation.

Papalexandratou Z, Kaasik K, Kauffmann LV, Skorstengaard A, Bouillon G, Espensen JL, Hansen LH, Jakobsen RR, Blennow A, Krych L, Castro-Mejía JL, Nielsen DS.

Int J Food Microbiol. 2019 Sep 2;304:106-118. doi: 10.1016/j.ijfoodmicro.2019.05.012. Epub 2019 Jun 2.


Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet.

Rasmussen TS, de Vries L, Kot W, Hansen LH, Castro-Mejía JL, Vogensen FK, Hansen AK, Nielsen DS.

Viruses. 2019 May 13;11(5). pii: E435. doi: 10.3390/v11050435.


Kombucha Beverage from Green, Black and Rooibos Teas: A Comparative Study Looking at Microbiology, Chemistry and Antioxidant Activity.

Gaggìa F, Baffoni L, Galiano M, Nielsen DS, Jakobsen RR, Castro-Mejía JL, Bosi S, Truzzi F, Musumeci F, Dinelli G, Di Gioia D.

Nutrients. 2018 Dec 20;11(1). pii: E1. doi: 10.3390/nu11010001.


Cheese brines from Danish dairies reveal a complex microbiota comprising several halotolerant bacteria and yeasts.

Haastrup MK, Johansen P, Malskær AH, Castro-Mejía JL, Kot W, Krych L, Arneborg N, Jespersen L.

Int J Food Microbiol. 2018 Nov 20;285:173-187. doi: 10.1016/j.ijfoodmicro.2018.08.015. Epub 2018 Aug 23.


Extraction and Purification of Viruses from Fecal Samples for Metagenome and Morphology Analyses.

Castro-Mejía JL, Deng L, Vogensen FK, Reyes A, Nielsen DS.

Methods Mol Biol. 2018;1838:49-57. doi: 10.1007/978-1-4939-8682-8_5.


A prebiotic intervention study in children with autism spectrum disorders (ASDs).

Grimaldi R, Gibson GR, Vulevic J, Giallourou N, Castro-Mejía JL, Hansen LH, Leigh Gibson E, Nielsen DS, Costabile A.

Microbiome. 2018 Aug 2;6(1):133. doi: 10.1186/s40168-018-0523-3.


Ingestion of an Inulin-Enriched Pork Sausage Product Positively Modulates the Gut Microbiome and Metabolome of Healthy Rats.

Thøgersen R, Castro-Mejía JL, Sundekilde UK, Hansen LH, Hansen AK, Nielsen DS, Bertram HC.

Mol Nutr Food Res. 2018 Oct;62(19):e1800608. doi: 10.1002/mnfr.201800608. Epub 2018 Jul 25.


Gut microbiota recovery and immune response in ampicillin-treated mice.

Castro-Mejía JL, Jakesevic M, Fabricius NF, Krych Ł, Nielsen DS, Kot W, Bendtsen KM, Vogensen FK, Hansen CHF, Hansen AK.

Res Vet Sci. 2018 Jun;118:357-364. doi: 10.1016/j.rvsc.2018.03.013. Epub 2018 Mar 27.


Investigation of the bacteriophage community in induced lysates of undefined mesophilic mixed-strain DL-cultures using classical and metagenomic approaches.

Muhammed MK, Olsen ML, Kot W, Neve H, Castro-Mejía JL, Janzen T, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, Vogensen FK.

Int J Food Microbiol. 2018 May 2;272:61-72. doi: 10.1016/j.ijfoodmicro.2018.02.012. Epub 2018 Feb 21.


Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.

Muhammed MK, Kot W, Neve H, Mahony J, Castro-Mejía JL, Krych L, Hansen LH, Nielsen DS, Sørensen SJ, Heller KJ, van Sinderen D, Vogensen FK.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e00888-17. doi: 10.1128/AEM.00888-17. Print 2017 Oct 1.


Counteracting Age-related Loss of Skeletal Muscle Mass: a clinical and ethnological trial on the role of protein supplementation and training load (CALM Intervention Study): study protocol for a randomized controlled trial.

Bechshøft RL, Reitelseder S, Højfeldt G, Castro-Mejía JL, Khakimov B, Ahmad HF, Kjær M, Engelsen SB, Johansen SM, Rasmussen MA, Lassen AJ, Jensen T, Beyer N, Serena A, Perez-Cueto FJ, Nielsen DS, Jespersen AP, Holm L.

Trials. 2016 Aug 9;17(1):397. doi: 10.1186/s13063-016-1512-0.


Optimizing protocols for extraction of bacteriophages prior to metagenomic analyses of phage communities in the human gut.

Castro-Mejía JL, Muhammed MK, Kot W, Neve H, Franz CM, Hansen LH, Vogensen FK, Nielsen DS.

Microbiome. 2015 Nov 17;3:64. doi: 10.1186/s40168-015-0131-4.


Host-Specific and pH-Dependent Microbiomes of Copepods in an Extensive Rearing System.

Skovgaard A, Castro-Mejia JL, Hansen LH, Nielsen DS.

PLoS One. 2015 Jul 13;10(7):e0132516. doi: 10.1371/journal.pone.0132516. eCollection 2015.


Initial adhesion of Listeria monocytogenes to fine polished stainless steel under flow conditions is determined by prior growth conditions.

Skovager A, Larsen MH, Castro-Mejia JL, Hecker M, Albrecht D, Gerth U, Arneborg N, Ingmer H.

Int J Food Microbiol. 2013 Jul 1;165(1):35-42. doi: 10.1016/j.ijfoodmicro.2013.04.014. Epub 2013 Apr 26.


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