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Items: 33

1.

Unexplored Genetic Diversity of Multidrug- and Extremely Drug-Resistant Acinetobacter baumannii Isolates from Tertiary Hospitals in Honduras.

López-Leal G, Zuniga-Moya JC, Castro-Jaimes S, Graña-Miraglia L, Pérez-Oseguera Á, Reyes-García HS, Gough-Coto SD, Pavón-Madrid R, Bejarano SA, Ferrera A, Castillo-Ramírez S, Cevallos MA.

Microb Drug Resist. 2019 Jun;25(5):690-695. doi: 10.1089/mdr.2018.0311. Epub 2019 Jan 3.

PMID:
30614762
2.

Inaccurate Multilocus Sequence Typing of Acinetobacter baumannii.

Castillo-Ramírez S, Graña-Miraglia L.

Emerg Infect Dis. 2019 Jan;25(1):186-187. doi: 10.3201/eid2501.180374.

3.

Phylogenomics picks out the par excellence markers for species phylogeny in the genus Staphylococcus.

Graña-Miraglia L, Arreguín-Pérez C, López-Leal G, Muñoz A, Pérez-Oseguera A, Miranda-Miranda E, Cossío-Bayúgar R, Castillo-Ramírez S.

PeerJ. 2018 Oct 24;6:e5839. doi: 10.7717/peerj.5839. eCollection 2018.

4.

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere.

Challagundla L, Reyes J, Rafiqullah I, Sordelli DO, Echaniz-Aviles G, Velazquez-Meza ME, Castillo-Ramírez S, Fittipaldi N, Feldgarden M, Chapman SB, Calderwood MS, Carvajal LP, Rincon S, Hanson B, Planet PJ, Arias CA, Diaz L, Robinson DA.

Front Microbiol. 2018 Aug 22;9:1901. doi: 10.3389/fmicb.2018.01901. eCollection 2018.

5.

Invasive Methicillin-Resistant Staphylococcus aureus USA500 Strains from the U.S. Emerging Infections Program Constitute Three Geographically Distinct Lineages.

Frisch MB, Castillo-Ramírez S, Petit RA 3rd, Farley MM, Ray SM, Albrecht VS, Limbago BM, Hernandez J, See I, Satola SW, Read TD.

mSphere. 2018 May 2;3(3). pii: e00571-17. doi: 10.1128/mSphere.00571-17. eCollection 2018 May-Jun.

6.

Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen.

Graña-Miraglia L, Lozano LF, Velázquez C, Volkow-Fernández P, Pérez-Oseguera Á, Cevallos MA, Castillo-Ramírez S.

Front Microbiol. 2017 Sep 20;8:1817. doi: 10.3389/fmicb.2017.01817. eCollection 2017.

7.

Complete Genome Sequence of a blaOXA-58-Producing Acinetobacter baumannii Strain Isolated from a Mexican Hospital.

Pérez-Oseguera Á, Castro-Jaimes S, Salgado-Camargo AD, Silva-Sanchez J, Garza-González E, Castillo-Ramírez S, Cevallos MÁ.

Genome Announc. 2017 Sep 7;5(36). pii: e00949-17. doi: 10.1128/genomeA.00949-17.

8.

1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway.

Vences-Guzmán MÁ, Paula Goetting-Minesky M, Guan Z, Castillo-Ramirez S, Córdoba-Castro LA, López-Lara IM, Geiger O, Sohlenkamp C, Christopher Fenno J.

Mol Microbiol. 2017 Mar;103(5):896-912. doi: 10.1111/mmi.13596. Epub 2017 Jan 17.

9.

Dynamics of genome change among Legionella species.

Joseph SJ, Cox D, Wolff B, Morrison SS, Kozak-Muiznieks NA, Frace M, Didelot X, Castillo-Ramirez S, Winchell J, Read TD, Dean D.

Sci Rep. 2016 Sep 16;6:33442. doi: 10.1038/srep33442.

10.

Recurrent evolution of host and vector association in bacteria of the Borrelia burgdorferi sensu lato species complex.

Becker NS, Margos G, Blum H, Krebs S, Graf A, Lane RS, Castillo-Ramírez S, Sing A, Fingerle V.

BMC Genomics. 2016 Sep 15;17(1):734. doi: 10.1186/s12864-016-3016-4.

11.

Complete Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii Isolate Obtained from a Mexican Hospital (Sequence Type 422).

Castro-Jaimes S, Salgado-Camargo AD, Graña-Miraglia L, Lozano L, Bocanegra-Ibarias P, Volkow-Fernández P, Silva-Sanchez J, Castillo-Ramírez S, Cevallos MA.

Genome Announc. 2016 Jun 23;4(3). pii: e00583-16. doi: 10.1128/genomeA.00583-16.

12.

Evolution of a Sigma Factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter Differentiation.

López-Leal G, Cevallos MA, Castillo-Ramírez S.

Front Microbiol. 2016 Apr 25;7:581. doi: 10.3389/fmicb.2016.00581. eCollection 2016.

13.

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.

Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H; European SRL Working Group.

MBio. 2016 May 5;7(3). pii: e00444-16. doi: 10.1128/mBio.00444-16.

14.

First Genome Sequence of a Mexican Multidrug-Resistant Acinetobacter baumannii Isolate.

Graña-Miraglia L, Lozano L, Castro-Jaimes S, Cevallos MA, Volkow P, Castillo-Ramírez S.

Genome Announc. 2016 Mar 24;4(2). pii: e00156-16. doi: 10.1128/genomeA.00156-16.

15.

Trans-Atlantic exchanges have shaped the population structure of the Lyme disease agent Borrelia burgdorferi sensu stricto.

Castillo-Ramírez S, Fingerle V, Jungnick S, Straubinger RK, Krebs S, Blum H, Meinel DM, Hofmann H, Guertler P, Sing A, Margos G.

Sci Rep. 2016 Mar 9;6:22794. doi: 10.1038/srep22794.

16.

Chlamydiaceae Genomics Reveals Interspecies Admixture and the Recent Evolution of Chlamydia abortus Infecting Lower Mammalian Species and Humans.

Joseph SJ, Marti H, Didelot X, Castillo-Ramirez S, Read TD, Dean D.

Genome Biol Evol. 2015 Oct 27;7(11):3070-84. doi: 10.1093/gbe/evv201.

17.

Species-specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota.

Bolaños LM, Rosenblueth M, Castillo-Ramírez S, Figuier-Huttin G, Martínez-Romero E.

Environ Microbiol. 2016 May;18(5):1364-78. doi: 10.1111/1462-2920.12939. Epub 2015 Aug 4.

PMID:
26058415
18.

Population structure of Neisseria gonorrhoeae based on whole genome data and its relationship with antibiotic resistance.

Ezewudo MN, Joseph SJ, Castillo-Ramirez S, Dean D, Del Rio C, Didelot X, Dillon JA, Selden RF, Shafer WM, Turingan RS, Unemo M, Read TD.

PeerJ. 2015 Mar 5;3:e806. doi: 10.7717/peerj.806. eCollection 2015.

19.

RNA-Seq analysis of the multipartite genome of Rhizobium etli CE3 shows different replicon contributions under heat and saline shock.

López-Leal G, Tabche ML, Castillo-Ramírez S, Mendoza-Vargas A, Ramírez-Romero MA, Dávila G.

BMC Genomics. 2014 Sep 8;15:770. doi: 10.1186/1471-2164-15-770.

20.

Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements.

Brynildsrud O, Feil EJ, Bohlin J, Castillo-Ramirez S, Colquhoun D, McCarthy U, Matejusova IM, Rhodes LD, Wiens GD, Verner-Jeffreys DW.

ISME J. 2014 Apr;8(4):746-56. doi: 10.1038/ismej.2013.186. Epub 2013 Oct 31.

21.

Genetic relationships of Vibrio parahaemolyticus isolates from clinical, human carrier, and environmental sources in Thailand, determined by multilocus sequence analysis.

Theethakaew C, Feil EJ, Castillo-Ramírez S, Aanensen DM, Suthienkul O, Neil DM, Davies RL.

Appl Environ Microbiol. 2013 Apr;79(7):2358-70. doi: 10.1128/AEM.03067-12. Epub 2013 Feb 1.

22.

A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic.

Holden MT, Hsu LY, Kurt K, Weinert LA, Mather AE, Harris SR, Strommenger B, Layer F, Witte W, de Lencastre H, Skov R, Westh H, Zemlicková H, Coombs G, Kearns AM, Hill RL, Edgeworth J, Gould I, Gant V, Cooke J, Edwards GF, McAdam PR, Templeton KE, McCann A, Zhou Z, Castillo-Ramírez S, Feil EJ, Hudson LO, Enright MC, Balloux F, Aanensen DM, Spratt BG, Fitzgerald JR, Parkhill J, Achtman M, Bentley SD, Nübel U.

Genome Res. 2013 Apr;23(4):653-64. doi: 10.1101/gr.147710.112. Epub 2013 Jan 8.

23.

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus.

Castillo-Ramírez S, Corander J, Marttinen P, Aldeljawi M, Hanage WP, Westh H, Boye K, Gulay Z, Bentley SD, Parkhill J, Holden MT, Feil EJ.

Genome Biol. 2012 Dec 27;13(12):R126. doi: 10.1186/gb-2012-13-12-r126.

24.

Two boundaries separate Borrelia burgdorferi populations in North America.

Margos G, Tsao JI, Castillo-Ramírez S, Girard YA, Hamer SA, Hoen AG, Lane RS, Raper SL, Ogden NH.

Appl Environ Microbiol. 2012 Sep;78(17):6059-67. doi: 10.1128/AEM.00231-12. Epub 2012 Jun 22.

25.

Phylogeography of Lyme borreliosis-group spirochetes and methicillin-resistant Staphylococcus aureus.

Margos G, Castillo-Ramírez S, Hoen AG.

Parasitology. 2012 Dec;139(14):1952-65. doi: 10.1017/S0031182012000741. Epub 2012 May 23. Review.

PMID:
22617338
26.

A very early-branching Staphylococcus aureus lineage lacking the carotenoid pigment staphyloxanthin.

Holt DC, Holden MT, Tong SY, Castillo-Ramirez S, Clarke L, Quail MA, Currie BJ, Parkhill J, Bentley SD, Feil EJ, Giffard PM.

Genome Biol Evol. 2011;3:881-95. doi: 10.1093/gbe/evr078. Epub 2011 Aug 2.

27.

The impact of recombination on dN/dS within recently emerged bacterial clones.

Castillo-Ramírez S, Harris SR, Holden MT, He M, Parkhill J, Bentley SD, Feil EJ.

PLoS Pathog. 2011 Jul;7(7):e1002129. doi: 10.1371/journal.ppat.1002129. Epub 2011 Jul 14.

28.

Transcriptional profiling of fetal hypothalamic TRH neurons.

Guerra-Crespo M, Pérez-Monter C, Janga SC, Castillo-Ramírez S, Gutiérrez-Rios RM, Joseph-Bravo P, Pérez-Martínez L, Charli JL.

BMC Genomics. 2011 May 10;12:222. doi: 10.1186/1471-2164-12-222.

29.

Horizontal gene transfer and diverse functional constrains within a common replication-partitioning system in Alphaproteobacteria: the repABC operon.

Castillo-Ramírez S, Vázquez-Castellanos JF, González V, Cevallos MA.

BMC Genomics. 2009 Nov 18;10:536. doi: 10.1186/1471-2164-10-536.

30.

The Rhizobium etli RpoH1 and RpoH2 sigma factors are involved in different stress responses.

Martínez-Salazar JM, Sandoval-Calderón M, Guo X, Castillo-Ramírez S, Reyes A, Loza MG, Rivera J, Alvarado-Affantranger X, Sánchez F, González V, Dávila G, Ramírez-Romero MA.

Microbiology. 2009 Feb;155(Pt 2):386-97. doi: 10.1099/mic.0.021428-0.

PMID:
19202087
31.

Factors affecting the concordance between orthologous gene trees and species tree in bacteria.

Castillo-Ramírez S, González V.

BMC Evol Biol. 2008 Oct 30;8:300. doi: 10.1186/1471-2148-8-300.

32.

A common genomic framework for a diverse assembly of plasmids in the symbiotic nitrogen fixing bacteria.

Crossman LC, Castillo-Ramírez S, McAnnula C, Lozano L, Vernikos GS, Acosta JL, Ghazoui ZF, Hernández-González I, Meakin G, Walker AW, Hynes MF, Young JP, Downie JA, Romero D, Johnston AW, Dávila G, Parkhill J, González V.

PLoS One. 2008 Jul 2;3(7):e2567. doi: 10.1371/journal.pone.0002567. Erratum in: PLoS ONE. 2008;3(8). doi: 10.1371/annotation/4a58a9bd-7531-41d0-b101-53039a88c25b. PLoS ONE. 2008;3(8). doi: 10.1371/annotation/8d8e2649-c772-4363-b70b-b242c42f505f.

33.

Rapid evolutionary change of common bean (Phaseolus vulgaris L) plastome, and the genomic diversification of legume chloroplasts.

Guo X, Castillo-Ramírez S, González V, Bustos P, Fernández-Vázquez JL, Santamaría RI, Arellano J, Cevallos MA, Dávila G.

BMC Genomics. 2007 Jul 10;8:228.

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