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Items: 30

1.

Author Correction: Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Mar 26;10(1):1451. doi: 10.1038/s41467-019-09423-3.

2.

Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria.

Matheus Carnevali PB, Schulz F, Castelle CJ, Kantor RS, Shih PM, Sharon I, Santini JM, Olm MR, Amano Y, Thomas BC, Anantharaman K, Burstein D, Becraft ED, Stepanauskas R, Woyke T, Banfield JF.

Nat Commun. 2019 Jan 28;10(1):463. doi: 10.1038/s41467-018-08246-y. Erratum in: Nat Commun. 2019 Mar 26;10(1):1451.

3.

Lateral Gene Transfer Shapes the Distribution of RuBisCO among Candidate Phyla Radiation Bacteria and DPANN Archaea.

Jaffe AL, Castelle CJ, Dupont CL, Banfield JF.

Mol Biol Evol. 2019 Mar 1;36(3):435-446. doi: 10.1093/molbev/msy234.

4.

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations.

Castelle CJ, Brown CT, Anantharaman K, Probst AJ, Huang RH, Banfield JF.

Nat Rev Microbiol. 2018 Oct;16(10):629-645. doi: 10.1038/s41579-018-0076-2.

5.

Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota.

Hua ZS, Qu YN, Zhu Q, Zhou EM, Qi YL, Yin YR, Rao YZ, Tian Y, Li YX, Liu L, Castelle CJ, Hedlund BP, Shu WS, Knight R, Li WJ.

Nat Commun. 2018 Jul 19;9(1):2832. doi: 10.1038/s41467-018-05284-4.

6.

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages.

Liu X, Li M, Castelle CJ, Probst AJ, Zhou Z, Pan J, Liu Y, Banfield JF, Gu JD.

Microbiome. 2018 Jun 8;6(1):102. doi: 10.1186/s40168-018-0488-2.

7.

Major New Microbial Groups Expand Diversity and Alter our Understanding of the Tree of Life.

Castelle CJ, Banfield JF.

Cell. 2018 Mar 8;172(6):1181-1197. doi: 10.1016/j.cell.2018.02.016. Review.

8.

Retroelement-guided protein diversification abounds in vast lineages of Bacteria and Archaea.

Paul BG, Burstein D, Castelle CJ, Handa S, Arambula D, Czornyj E, Thomas BC, Ghosh P, Miller JF, Banfield JF, Valentine DL.

Nat Microbiol. 2017 Apr 3;2:17045. doi: 10.1038/nmicrobiol.2017.45.

9.

Unusual respiratory capacity and nitrogen metabolism in a Parcubacterium (OD1) of the Candidate Phyla Radiation.

Castelle CJ, Brown CT, Thomas BC, Williams KH, Banfield JF.

Sci Rep. 2017 Jan 9;7:40101. doi: 10.1038/srep40101.

10.

RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria.

Wrighton KC, Castelle CJ, Varaljay VA, Satagopan S, Brown CT, Wilkins MJ, Thomas BC, Sharon I, Williams KH, Tabita FR, Banfield JF.

ISME J. 2016 Nov;10(11):2702-2714. doi: 10.1038/ismej.2016.53. Epub 2016 May 3.

11.

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system.

Anantharaman K, Brown CT, Hug LA, Sharon I, Castelle CJ, Probst AJ, Thomas BC, Singh A, Wilkins MJ, Karaoz U, Brodie EL, Williams KH, Hubbard SS, Banfield JF.

Nat Commun. 2016 Oct 24;7:13219. doi: 10.1038/ncomms13219.

12.

A new view of the tree of life.

Hug LA, Baker BJ, Anantharaman K, Brown CT, Probst AJ, Castelle CJ, Butterfield CN, Hernsdorf AW, Amano Y, Ise K, Suzuki Y, Dudek N, Relman DA, Finstad KM, Amundson R, Thomas BC, Banfield JF.

Nat Microbiol. 2016 Apr 11;1:16048. doi: 10.1038/nmicrobiol.2016.48.

PMID:
27572647
13.

Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations.

Probst AJ, Castelle CJ, Singh A, Brown CT, Anantharaman K, Sharon I, Hug LA, Burstein D, Emerson JB, Thomas BC, Banfield JF.

Environ Microbiol. 2017 Feb;19(2):459-474. doi: 10.1111/1462-2920.13362. Epub 2016 Jul 7.

PMID:
27112493
14.

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum.

Anantharaman K, Brown CT, Burstein D, Castelle CJ, Probst AJ, Thomas BC, Williams KH, Banfield JF.

PeerJ. 2016 Jan 28;4:e1607. doi: 10.7717/peerj.1607. eCollection 2016.

15.

Correlative Cryogenic Spectromicroscopy to Investigate Selenium Bioreduction Products.

Fakra SC, Luef B, Castelle CJ, Mullin SW, Williams KH, Marcus MA, Schichnes D, Banfield JF.

Environ Sci Technol. 2018 Jan 16;52(2):503-512. doi: 10.1021/acs.est.5b01409. Epub 2017 Dec 29.

PMID:
26371540
16.

Unusual biology across a group comprising more than 15% of domain Bacteria.

Brown CT, Hug LA, Thomas BC, Sharon I, Castelle CJ, Singh A, Wilkins MJ, Wrighton KC, Williams KH, Banfield JF.

Nature. 2015 Jul 9;523(7559):208-11. doi: 10.1038/nature14486. Epub 2015 Jun 15.

17.

The aerobic respiratory chain of the acidophilic archaeon Ferroplasma acidiphilum: A membrane-bound complex oxidizing ferrous iron.

Castelle CJ, Roger M, Bauzan M, Brugna M, Lignon S, Nimtz M, Golyshina OV, Giudici-Orticoni MT, Guiral M.

Biochim Biophys Acta. 2015 Aug;1847(8):717-28. doi: 10.1016/j.bbabio.2015.04.006. Epub 2015 Apr 18.

18.

Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development.

Raveh-Sadka T, Thomas BC, Singh A, Firek B, Brooks B, Castelle CJ, Sharon I, Baker R, Good M, Morowitz MJ, Banfield JF.

Elife. 2015 Mar 3;4. doi: 10.7554/eLife.05477.

19.

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.

Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield JF.

Curr Biol. 2015 Mar 16;25(6):690-701. doi: 10.1016/j.cub.2015.01.014. Epub 2015 Feb 19.

20.

Accurate, multi-kb reads resolve complex populations and detect rare microorganisms.

Sharon I, Kertesz M, Hug LA, Pushkarev D, Blauwkamp TA, Castelle CJ, Amirebrahimi M, Thomas BC, Burstein D, Tringe SG, Williams KH, Banfield JF.

Genome Res. 2015 Apr;25(4):534-43. doi: 10.1101/gr.183012.114. Epub 2015 Feb 9.

21.

Changes in protein expression across laboratory and field experiments in Geobacter bemidjiensis.

Merkley ED, Wrighton KC, Castelle CJ, Anderson BJ, Wilkins MJ, Shah V, Arbour T, Brown JN, Singer SW, Smith RD, Lipton MS.

J Proteome Res. 2015 Mar 6;14(3):1361-75. doi: 10.1021/pr500983v. Epub 2015 Feb 3.

PMID:
25496566
22.

Spectroscopic characterization of a green copper site in a single-domain cupredoxin.

Roger M, Biaso F, Castelle CJ, Bauzan M, Chaspoul F, Lojou E, Sciara G, Caffarri S, Giudici-Orticoni MT, Ilbert M.

PLoS One. 2014 Jun 16;9(6):e98941. doi: 10.1371/journal.pone.0098941. eCollection 2014.

23.

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF.

ISME J. 2014 Jul;8(7):1452-63. doi: 10.1038/ismej.2013.249. Epub 2014 Mar 13.

24.

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(2):362-372. doi: 10.1099/mic.0.073965-0.

PMID:
28206912
25.
26.

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling.

Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF.

Microbiome. 2013 Aug 5;1(1):22. doi: 10.1186/2049-2618-1-22.

27.

Single-cell genomics reveals metabolic strategies for microbial growth and survival in an oligotrophic aquifer.

Wilkins MJ, Kennedy DW, Castelle CJ, Field EK, Stepanauskas R, Fredrickson JK, Konopka AE.

Microbiology. 2014 Feb;160(Pt 2):362-72. doi: 10.1099/mic.0.073965-0. Epub 2013 Dec 9.

PMID:
24324032
28.

Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla.

Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF.

MBio. 2013 Oct 22;4(5):e00708-13. doi: 10.1128/mBio.00708-13.

29.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF.

Nat Commun. 2013;4:2120. doi: 10.1038/ncomms3120.

30.

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Wrighton KC, Thomas BC, Sharon I, Miller CS, Castelle CJ, VerBerkmoes NC, Wilkins MJ, Hettich RL, Lipton MS, Williams KH, Long PE, Banfield JF.

Science. 2012 Sep 28;337(6102):1661-5. Erratum in: Science. 2012 Nov 9;338(6108):742.

PMID:
23019650

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