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Items: 34

1.

Resequencing of massive pine genomes helps to unlock the genetic underpinning of quantitative traits in conifer trees.

Casola C.

New Phytol. 2019 Mar;221(4):1669-1671. doi: 10.1111/nph.15655. No abstract available.

2.

The nonrandom evolution of gene families.

Casola C, Lawing AM.

Am J Bot. 2019 Jan;106(1):14-17. doi: 10.1002/ajb2.1211. Epub 2018 Dec 31. No abstract available.

PMID:
30597524
3.
4.

Pinaceae show elevated rates of gene turnover that are robust to incomplete gene annotation.

Casola C, Koralewski TE.

Plant J. 2018 Jun 14. doi: 10.1111/tpj.13994. [Epub ahead of print]

PMID:
29901849
5.

LTR Retrotransposons Show Low Levels of Unequal Recombination and High Rates of Intraelement Gene Conversion in Large Plant Genomes.

Cossu RM, Casola C, Giacomello S, Vidalis A, Scofield DG, Zuccolo A.

Genome Biol Evol. 2017 Dec 1;9(12):3449-3462. doi: 10.1093/gbe/evx260.

6.

HSP27 immunization reinforces AII amacrine cell and synapse damage induced by S100 in an autoimmune glaucoma model.

Reinehr S, Kuehn S, Casola C, Koch D, Stute G, Grotegut P, Dick HB, Joachim SC.

Cell Tissue Res. 2018 Feb;371(2):237-249. doi: 10.1007/s00441-017-2710-0. Epub 2017 Oct 24.

PMID:
29064077
7.

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae.

Neale DB, McGuire PE, Wheeler NC, Stevens KA, Crepeau MW, Cardeno C, Zimin AV, Puiu D, Pertea GM, Sezen UU, Casola C, Koralewski TE, Paul R, Gonzalez-Ibeas D, Zaman S, Cronn R, Yandell M, Holt C, Langley CH, Yorke JA, Salzberg SL, Wegrzyn JL.

G3 (Bethesda). 2017 Sep 7;7(9):3157-3167. doi: 10.1534/g3.117.300078.

8.
9.

Specific Inner Retinal Layer Cell Damage in an Autoimmune Glaucoma Model Is Induced by GDNF With or Without HSP27.

Casola C, Reinehr S, Kuehn S, Stute G, Spiess BM, Dick HB, Joachim SC.

Invest Ophthalmol Vis Sci. 2016 Jul 1;57(8):3626-39. doi: 10.1167/iovs.15-18999R2.

10.

An Ancient Transkingdom Horizontal Transfer of Penelope-Like Retroelements from Arthropods to Conifers.

Lin X, Faridi N, Casola C.

Genome Biol Evol. 2016 May 2;8(4):1252-66. doi: 10.1093/gbe/evw076.

11.

TP53 Gene and Cancer Resistance in Elephants.

Casola C.

JAMA. 2016 Apr 26;315(16):1788-9. doi: 10.1001/jama.2016.0440. No abstract available.

PMID:
27115383
12.

S100 alone has the same destructive effect on retinal ganglion cells as in combination with HSP 27 in an autoimmune glaucoma model.

Casola C, Schiwek JE, Reinehr S, Kuehn S, Grus FH, Kramer M, Dick HB, Joachim SC.

J Mol Neurosci. 2015 May;56(1):228-36. doi: 10.1007/s12031-014-0485-2. Epub 2015 Jan 11.

PMID:
25577368
13.

Gibbon genome and the fast karyotype evolution of small apes.

Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, Beal K, Blancher A, Bohrson CL, Brameier M, Campbell MS, Capozzi O, Casola C, Chiatante G, Cree A, Damert A, de Jong PJ, Dumas L, Fernandez-Callejo M, Flicek P, Fuchs NV, Gut I, Gut M, Hahn MW, Hernandez-Rodriguez J, Hillier LW, Hubley R, Ianc B, Izsvák Z, Jablonski NG, Johnstone LM, Karimpour-Fard A, Konkel MK, Kostka D, Lazar NH, Lee SL, Lewis LR, Liu Y, Locke DP, Mallick S, Mendez FL, Muffato M, Nazareth LV, Nevonen KA, O'Bleness M, Ochis C, Odom DT, Pollard KS, Quilez J, Reich D, Rocchi M, Schumann GG, Searle S, Sikela JM, Skollar G, Smit A, Sonmez K, ten Hallers B, Terhune E, Thomas GW, Ullmer B, Ventura M, Walker JA, Wall JD, Walter L, Ward MC, Wheelan SJ, Whelan CW, White S, Wilhelm LJ, Woerner AE, Yandell M, Zhu B, Hammer MF, Marques-Bonet T, Eichler EE, Fulton L, Fronick C, Muzny DM, Warren WC, Worley KC, Rogers J, Wilson RK, Gibbs RA.

Nature. 2014 Sep 11;513(7517):195-201. doi: 10.1038/nature13679.

14.

The effects of chronic food restriction on cue-induced heroin seeking in abstinent male rats.

D'Cunha TM, Sedki F, Macri J, Casola C, Shalev U.

Psychopharmacology (Berl). 2013 Jan;225(1):241-50. doi: 10.1007/s00213-012-2810-1. Epub 2012 Aug 3.

PMID:
22864945
15.

Very low rate of gene conversion in the yeast genome.

Casola C, Conant GC, Hahn MW.

Mol Biol Evol. 2012 Dec;29(12):3817-26. doi: 10.1093/molbev/mss192. Epub 2012 Jul 27.

PMID:
22844073
16.

Interlocus gene conversion events introduce deleterious mutations into at least 1% of human genes associated with inherited disease.

Casola C, Zekonyte U, Phillips AD, Cooper DN, Hahn MW.

Genome Res. 2012 Mar;22(3):429-35. doi: 10.1101/gr.127738.111. Epub 2011 Nov 16.

17.

Convergent evolution of endometrial prolactin expression in primates, mice, and elephants through the independent recruitment of transposable elements.

Emera D, Casola C, Lynch VJ, Wildman DE, Agnew D, Wagner GP.

Mol Biol Evol. 2012 Jan;29(1):239-47. doi: 10.1093/molbev/msr189. Epub 2011 Aug 2.

PMID:
21813467
18.

Daz- and pumilio-like genes are asymmetrically localized in Pelophylax (Rana) oocytes and are expressed during early spermatogenesis.

Marracci S, Michelotti V, Casola C, Giacoma C, Ragghianti M.

J Exp Zool B Mol Dev Evol. 2011 Jul 15;316(5):330-8. doi: 10.1002/jez.b.21405. Epub 2011 Feb 22.

PMID:
21344644
19.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

20.

Comparative and demographic analysis of orang-utan genomes.

Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK.

Nature. 2011 Jan 27;469(7331):529-33. doi: 10.1038/nature09687.

21.

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics.

Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW.

Science. 2010 Oct 1;330(6000):86-8. doi: 10.1126/science.1191864.

22.

Nonallelic gene conversion in the genus Drosophila.

Casola C, Ganote CL, Hahn MW.

Genetics. 2010 May;185(1):95-103. doi: 10.1534/genetics.110.115444. Epub 2010 Mar 9.

23.

Evolution of the Schlafen genes, a gene family associated with embryonic lethality, meiotic drive, immune processes and orthopoxvirus virulence.

Bustos O, Naik S, Ayers G, Casola C, Perez-Lamigueiro MA, Chippindale PT, Pritham EJ, de la Casa-Esperón E.

Gene. 2009 Nov 1;447(1):1-11. doi: 10.1016/j.gene.2009.07.006. Epub 2009 Jul 17.

PMID:
19619625
24.

Gene conversion among paralogs results in moderate false detection of positive selection using likelihood methods.

Casola C, Hahn MW.

J Mol Evol. 2009 Jun;68(6):679-87. doi: 10.1007/s00239-009-9241-6. Epub 2009 May 27.

PMID:
19471989
25.

Adaptive evolution of young gene duplicates in mammals.

Han MV, Demuth JP, McGrath CL, Casola C, Hahn MW.

Genome Res. 2009 May;19(5):859-67. doi: 10.1101/gr.085951.108.

26.

Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes.

McGrath CL, Casola C, Hahn MW.

Genetics. 2009 Jun;182(2):615-22. doi: 10.1534/genetics.109.101428. Epub 2009 Mar 23.

27.

Quality of regulatory elements in Drosophila retrogenes.

Bai Y, Casola C, Betrán E.

Genomics. 2009 Jan;93(1):83-9. doi: 10.1016/j.ygeno.2008.09.006. Epub 2008 Oct 23.

28.

Evolutionary origin of regulatory regions of retrogenes in Drosophila.

Bai Y, Casola C, Betrán E.

BMC Genomics. 2008 May 22;9:241. doi: 10.1186/1471-2164-9-241.

29.

Transposase-derived transcription factors regulate light signaling in Arabidopsis.

Lin R, Ding L, Casola C, Ripoll DR, Feschotte C, Wang H.

Science. 2007 Nov 23;318(5854):1302-5. Erratum in: Science. 2007 Dec 21;318(5858):1866.

30.

Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals.

Casola C, Hucks D, Feschotte C.

Mol Biol Evol. 2008 Jan;25(1):29-41. Epub 2007 Oct 16.

31.

PIF-like transposons are common in drosophila and have been repeatedly domesticated to generate new host genes.

Casola C, Lawing AM, Betrán E, Feschotte C.

Mol Biol Evol. 2007 Aug;24(8):1872-88. Epub 2007 Jun 7.

PMID:
17556756
32.

Gametogenesis of intergroup hybrids of hemiclonal frogs.

Ragghianti M, Bucci S, Marracci S, Casola C, Mancino G, Hotz H, Guex GD, Plötner J, Uzzell T.

Genet Res. 2007 Feb;89(1):39-45.

33.

Differential expression of two vasa/PL10-related genes during gametogenesis in the special model system Rana.

Marracci S, Casola C, Bucci S, Ragghianti M, Ogielska M, Mancino G.

Dev Genes Evol. 2007 May;217(5):395-402. Epub 2007 Mar 2.

PMID:
17333258
34.

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