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Genomic comparison of 60 completely sequenced bacteriophages that infect Erwinia and/or Pantoea bacteria.

Thompson DW, Casjens SR, Sharma R, Grose JH.

Virology. 2019 Jun 18;535:59-73. doi: 10.1016/j.virol.2019.06.005. [Epub ahead of print]


The phage L capsid decoration protein has a novel OB-fold and an unusual capsid binding strategy.

Newcomer RL, Schrad JR, Gilcrease EB, Casjens SR, Feig M, Teschke CM, Alexandrescu AT, Parent KN.

Elife. 2019 Apr 4;8. pii: e45345. doi: 10.7554/eLife.45345.


Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis.

Gogokhia L, Buhrke K, Bell R, Hoffman B, Brown DG, Hanke-Gogokhia C, Ajami NJ, Wong MC, Ghazaryan A, Valentine JF, Porter N, Martens E, O'Connell R, Jacob V, Scherl E, Crawford C, Stephens WZ, Casjens SR, Longman RS, Round JL.

Cell Host Microbe. 2019 Feb 13;25(2):285-299.e8. doi: 10.1016/j.chom.2019.01.008.


In Vitro Studies of Lipopolysaccharide-Mediated DNA Release of Podovirus HK620.

Broeker NK, Kiele F, Casjens SR, Gilcrease EB, Thalhammer A, Koetz J, Barbirz S.

Viruses. 2018 May 29;10(6). pii: E289. doi: 10.3390/v10060289.


Cryo-EM Elucidation of the Structure of Bacteriophage P22 Virions after Genome Release.

McNulty R, Cardone G, Gilcrease EB, Baker TS, Casjens SR, Johnson JE.

Biophys J. 2018 Mar 27;114(6):1295-1301. doi: 10.1016/j.bpj.2018.01.026.


Primordial origin and diversification of plasmids in Lyme disease agent bacteria.

Casjens SR, Di L, Akther S, Mongodin EF, Luft BJ, Schutzer SE, Fraser CM, Qiu WG.

BMC Genomics. 2018 Mar 27;19(1):218. doi: 10.1186/s12864-018-4597-x.


Genes affecting progression of bacteriophage P22 infection in Salmonella identified by transposon and single gene deletion screens.

Bohm K, Porwollik S, Chu W, Dover JA, Gilcrease EB, Casjens SR, McClelland M, Parent KN.

Mol Microbiol. 2018 May;108(3):288-305. doi: 10.1111/mmi.13936. Epub 2018 Mar 30.


Roger Hendrix: Gentle Provocateur.

Casjens SR, Hatfull GF.

J Bacteriol. 2018 Apr 9;200(9). pii: e00058-18. doi: 10.1128/JB.00058-18. Print 2018 May 1. Review.


The genome sequence of Escherichia coli tailed phage D6 and the diversity of Enterobacteriales circular plasmid prophages.

Gilcrease EB, Casjens SR.

Virology. 2018 Feb;515:203-214. doi: 10.1016/j.virol.2017.12.019. Epub 2018 Jan 2.


Complete genome sequence of lytic bacteriophage RG-2014 that infects the multidrug resistant bacterium Delftia tsuruhatensis ARB-1.

Bhattacharjee AS, Motlagh AM, Gilcrease EB, Islam MI, Casjens SR, Goel R.

Stand Genomic Sci. 2017 Dec 18;12:82. doi: 10.1186/s40793-017-0290-y. eCollection 2017.


Genome Sequence of Escherichia coli Tailed Phage Utah.

Leavitt JC, Heitkamp AJ, Bhattacharjee AS, Gilcrease EB, Casjens SR.

Genome Announc. 2017 Mar 30;5(13). pii: e01494-16. doi: 10.1128/genomeA.01494-16.


Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses.

Motlagh AM, Bhattacharjee AS, Coutinho FH, Dutilh BE, Casjens SR, Goel RK.

Front Microbiol. 2017 Mar 3;8:352. doi: 10.3389/fmicb.2017.00352. eCollection 2017.


Plasmid diversity and phylogenetic consistency in the Lyme disease agent Borrelia burgdorferi.

Casjens SR, Gilcrease EB, Vujadinovic M, Mongodin EF, Luft BJ, Schutzer SE, Fraser CM, Qiu WG.

BMC Genomics. 2017 Feb 15;18(1):165. doi: 10.1186/s12864-017-3553-5.


Localization of the Houdinisome (Ejection Proteins) inside the Bacteriophage P22 Virion by Bubblegram Imaging.

Wu W, Leavitt JC, Cheng N, Gilcrease EB, Motwani T, Teschke CM, Casjens SR, Steven AC.

MBio. 2016 Aug 9;7(4). pii: e01152-16. doi: 10.1128/mBio.01152-16.


Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages.

Casjens SR, Grose JH.

Virology. 2016 Sep;496:255-276. doi: 10.1016/j.virol.2016.05.022. Epub 2016 Jun 30.


Structural Plasticity of the Protein Plug That Traps Newly Packaged Genomes in Podoviridae Virions.

Bhardwaj A, Sankhala RS, Olia AS, Brooke D, Casjens SR, Taylor DJ, Prevelige PE Jr, Cingolani G.

J Biol Chem. 2016 Jan 1;291(1):215-26. doi: 10.1074/jbc.M115.696260. Epub 2015 Nov 16.


Identification of the minimal cytolytic unit for streptolysin S and an expansion of the toxin family.

Molloy EM, Casjens SR, Cox CL, Maxson T, Ethridge NA, Margos G, Fingerle V, Mitchell DA.

BMC Microbiol. 2015 Jul 24;15:141. doi: 10.1186/s12866-015-0464-y.


Erratum for Martin et al., Phylogenomic Identification of Regulatory Sequences in Bacteria: an Analysis of Statistical Power and an Application to Borrelia burgdorferi Sensu Lato.

Martin CL, Sukarna TY, Akther S, Ramrattan G, Pagan P, Di L, Mongodin EF, Fraser CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG.

MBio. 2015 Jul 21;6(4):e00999. doi: 10.1128/mBio.00999-15. No abstract available.


Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

Bauer DW, Li D, Huffman J, Homa FL, Wilson K, Leavitt JC, Casjens SR, Baines J, Evilevitch A.

J Virol. 2015 Sep;89(18):9288-98. doi: 10.1128/JVI.01172-15. Epub 2015 Jul 1.


Genome Sequence of Salmonella enterica Phage Det7.

Casjens SR, Jacobs-Sera D, Hatfull GF, Hendrix RW.

Genome Announc. 2015 May 7;3(3). pii: e00279-15. doi: 10.1128/genomeA.00279-15.


Phylogenomic identification of regulatory sequences in bacteria: an analysis of statistical power and an application to Borrelia burgdorferi sensu lato.

Martin CL, Sukarna TY, Akther S, Ramrattan G, Pagan P, Di L, Mongodin EF, Fraser CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG.

MBio. 2015 Apr 14;6(2). pii: e00011-15. doi: 10.1128/mBio.00011-15. Erratum in: MBio. 2015;6(4):e00999. Martin, Che I [Corrected to Martin, Che L].


Bacteriophage lambda: Early pioneer and still relevant.

Casjens SR, Hendrix RW.

Virology. 2015 May;479-480:310-30. doi: 10.1016/j.virol.2015.02.010. Epub 2015 Mar 3. Review.


Genome Sequence of Salmonella Phage χ.

Hendrix RW, Ko CC, Jacobs-Sera D, Hatfull GF, Erhardt M, Hughes KT, Casjens SR.

Genome Announc. 2015 Feb 26;3(1). pii: e01229-14. doi: 10.1128/genomeA.01229-14.


Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae.

Grose JH, Casjens SR.

Virology. 2014 Nov;468-470:421-443. doi: 10.1016/j.virol.2014.08.024.


Genome Sequence of Salmonella Phage 9NA.

Casjens SR, Leavitt JC, Hatfull GF, Hendrix RW.

Genome Announc. 2014 Aug 21;2(4). pii: e00531-14. doi: 10.1128/genomeA.00531-14.


Three-dimensional reconstructions of the bacteriophage CUS-3 virion reveal a conserved coat protein I-domain but a distinct tailspike receptor-binding domain.

Parent KN, Tang J, Cardone G, Gilcrease EB, Janssen ME, Olson NH, Casjens SR, Baker TS.

Virology. 2014 Sep;464-465:55-66. doi: 10.1016/j.virol.2014.06.017. Epub 2014 Jul 18.


BorreliaBase: a phylogeny-centered browser of Borrelia genomes.

Di L, Pagan PE, Packer D, Martin CL, Akther S, Ramrattan G, Mongodin EF, Fraser CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG.

BMC Bioinformatics. 2014 Jul 3;15:233. doi: 10.1186/1471-2105-15-233.


OmpA and OmpC are critical host factors for bacteriophage Sf6 entry in Shigella.

Parent KN, Erb ML, Cardone G, Nguyen K, Gilcrease EB, Porcek NB, Pogliano J, Baker TS, Casjens SR.

Mol Microbiol. 2014 Apr;92(1):47-60. doi: 10.1111/mmi.12536. Epub 2014 Mar 6.


The agricultural antibiotic carbadox induces phage-mediated gene transfer in Salmonella.

Bearson BL, Allen HK, Brunelle BW, Lee IS, Casjens SR, Stanton TB.

Front Microbiol. 2014 Feb 11;5:52. doi: 10.3389/fmicb.2014.00052. eCollection 2014.


Exploring the atomic structure and conformational flexibility of a 320 Å long engineered viral fiber using X-ray crystallography.

Bhardwaj A, Casjens SR, Cingolani G.

Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):342-53. doi: 10.1107/S1399004713027685. Epub 2014 Jan 29.


Inter- and intra-specific pan-genomes of Borrelia burgdorferi sensu lato: genome stability and adaptive radiation.

Mongodin EF, Casjens SR, Bruno JF, Xu Y, Drabek EF, Riley DR, Cantarel BL, Pagan PE, Hernandez YA, Vargas LC, Dunn JJ, Schutzer SE, Fraser CM, Qiu WG, Luft BJ.

BMC Genomics. 2013 Oct 10;14:693. doi: 10.1186/1471-2164-14-693.


The tip of the tail needle affects the rate of DNA delivery by bacteriophage P22.

Leavitt JC, Gogokhia L, Gilcrease EB, Bhardwaj A, Cingolani G, Casjens SR.

PLoS One. 2013 Aug 12;8(8):e70936. doi: 10.1371/journal.pone.0070936. eCollection 2013.


Function and horizontal transfer of the small terminase subunit of the tailed bacteriophage Sf6 DNA packaging nanomotor.

Leavitt JC, Gilcrease EB, Wilson K, Casjens SR.

Virology. 2013 Jun 5;440(2):117-33. doi: 10.1016/j.virol.2013.02.023. Epub 2013 Apr 4.


A phyletically rare gene promotes the niche-specific fitness of an E. coli pathogen during bacteremia.

Wiles TJ, Norton JP, Smith SN, Lewis AJ, Mobley HL, Casjens SR, Mulvey MA.

PLoS Pathog. 2013 Feb;9(2):e1003175. doi: 10.1371/journal.ppat.1003175. Epub 2013 Feb 14.


Unraveling the role of the C-terminal helix turn helix of the coat-binding domain of bacteriophage P22 scaffolding protein.

Padilla-Meier GP, Gilcrease EB, Weigele PR, Cortines JR, Siegel M, Leavitt JC, Teschke CM, Casjens SR.

J Biol Chem. 2012 Sep 28;287(40):33766-80. Epub 2012 Aug 9.


Stepwise molecular display utilizing icosahedral and helical complexes of phage coat and decoration proteins in the development of robust nanoscale display vehicles.

Parent KN, Deedas CT, Egelman EH, Casjens SR, Baker TS, Teschke CM.

Biomaterials. 2012 Aug;33(22):5628-37. doi: 10.1016/j.biomaterials.2012.04.026. Epub 2012 May 8.


Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids.

Casjens SR, Mongodin EF, Qiu WG, Luft BJ, Schutzer SE, Gilcrease EB, Huang WM, Vujadinovic M, Aron JK, Vargas LC, Freeman S, Radune D, Weidman JF, Dimitrov GI, Khouri HM, Sosa JE, Halpin RA, Dunn JJ, Fraser CM.

PLoS One. 2012;7(3):e33280. doi: 10.1371/journal.pone.0033280. Epub 2012 Mar 14.


Structural evolution of the P22-like phages: comparison of Sf6 and P22 procapsid and virion architectures.

Parent KN, Gilcrease EB, Casjens SR, Baker TS.

Virology. 2012 Jun 5;427(2):177-88. doi: 10.1016/j.virol.2012.01.040. Epub 2012 Mar 3.


Short noncontractile tail machines: adsorption and DNA delivery by podoviruses.

Casjens SR, Molineux IJ.

Adv Exp Med Biol. 2012;726:143-79. doi: 10.1007/978-1-4614-0980-9_7. Review.


Whole-genome sequences of Borrelia bissettii, Borrelia valaisiana, and Borrelia spielmanii.

Schutzer SE, Fraser-Liggett CM, Qiu WG, Kraiczy P, Mongodin EF, Dunn JJ, Luft BJ, Casjens SR.

J Bacteriol. 2012 Jan;194(2):545-6. doi: 10.1128/JB.06263-11.


Whole-genome sequences of two Borrelia afzelii and two Borrelia garinii Lyme disease agent isolates.

Casjens SR, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Fraser-Liggett CM, Schutzer SE.

J Bacteriol. 2011 Dec;193(24):6995-6. doi: 10.1128/JB.05951-11.


Decoding bacteriophage P22 assembly: identification of two charged residues in scaffolding protein responsible for coat protein interaction.

Cortines JR, Weigele PR, Gilcrease EB, Casjens SR, Teschke CM.

Virology. 2011 Dec 5;421(1):1-11. doi: 10.1016/j.virol.2011.09.005. Epub 2011 Oct 4.


Pervasive recombination and sympatric genome diversification driven by frequency-dependent selection in Borrelia burgdorferi, the Lyme disease bacterium.

Haven J, Vargas LC, Mongodin EF, Xue V, Hernandez Y, Pagan P, Fraser-Liggett CM, Schutzer SE, Luft BJ, Casjens SR, Qiu WG.

Genetics. 2011 Nov;189(3):951-66. doi: 10.1534/genetics.111.130773. Epub 2011 Sep 2.


The DNA-packaging nanomotor of tailed bacteriophages.

Casjens SR.

Nat Rev Microbiol. 2011 Aug 12;9(9):647-57. doi: 10.1038/nrmicro2632. Review.


Atomic structure of bacteriophage Sf6 tail needle knob.

Bhardwaj A, Molineux IJ, Casjens SR, Cingolani G.

J Biol Chem. 2011 Sep 2;286(35):30867-77. doi: 10.1074/jbc.M111.260877. Epub 2011 Jun 25.


Evolution of mosaically related tailed bacteriophage genomes seen through the lens of phage P22 virion assembly.

Casjens SR, Thuman-Commike PA.

Virology. 2011 Mar 15;411(2):393-415. doi: 10.1016/j.virol.2010.12.046. Epub 2011 Feb 18. Review.


Whole genome sequence of an unusual Borrelia burgdorferi sensu lato isolate.

Casjens SR, Fraser-Liggett CM, Mongodin EF, Qiu WG, Dunn JJ, Luft BJ, Schutzer SE.

J Bacteriol. 2011 Mar;193(6):1489-90. doi: 10.1128/JB.01521-10. Epub 2011 Jan 7.


Whole-genome sequences of thirteen isolates of Borrelia burgdorferi.

Schutzer SE, Fraser-Liggett CM, Casjens SR, Qiu WG, Dunn JJ, Mongodin EF, Luft BJ.

J Bacteriol. 2011 Feb;193(4):1018-20. doi: 10.1128/JB.01158-10. Epub 2010 Oct 8.


Crystal structure of the DNA-recognition component of the bacterial virus Sf6 genome-packaging machine.

Zhao H, Finch CJ, Sequeira RD, Johnson BA, Johnson JE, Casjens SR, Tang L.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1971-6. doi: 10.1073/pnas.0908569107. Epub 2010 Jan 19.


Fast, adaptive evolution at a bacterial host-resistance locus: the PFam54 gene array in Borrelia burgdorferi.

Wywial E, Haven J, Casjens SR, Hernandez YA, Singh S, Mongodin EF, Fraser-Liggett CM, Luft BJ, Schutzer SE, Qiu WG.

Gene. 2009 Sep 15;445(1-2):26-37. doi: 10.1016/j.gene.2009.05.017. Epub 2009 Jun 6.

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