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Items: 1 to 50 of 92

1.

A long-term survey unveils strong seasonal patterns in the airborne microbiome coupled to general and regional atmospheric circulations.

Cáliz J, Triadó-Margarit X, Camarero L, Casamayor EO.

Proc Natl Acad Sci U S A. 2018 Nov 12. pii: 201812826. doi: 10.1073/pnas.1812826115. [Epub ahead of print]

PMID:
30420511
2.

Showcasing the role of seawater in bacteria recruitment and microbiome stability in sponges.

Turon M, Cáliz J, Garate L, Casamayor EO, Uriz MJ.

Sci Rep. 2018 Oct 12;8(1):15201. doi: 10.1038/s41598-018-33545-1.

3.

Microbial composition, potential functional roles and genetic novelty in gypsum-rich and hypersaline soils of Monegros and Gallocanta (Spain).

Menéndez-Serra M, Triadó-Margarit X, Castañeda C, Herrero J, Casamayor EO.

Sci Total Environ. 2019 Feb 10;650(Pt 1):343-353. doi: 10.1016/j.scitotenv.2018.09.050. Epub 2018 Sep 5.

PMID:
30199680
4.

Development of a 16S rRNA-targeted fluorescence in situ hybridization probe for quantification of the ammonia-oxidizer Nitrosotalea devanaterra and its relatives.

Restrepo-Ortiz CX, Merbt SN, Barrero-Canossa J, Fuchs BM, Casamayor EO.

Syst Appl Microbiol. 2018 Jul;41(4):408-413. doi: 10.1016/j.syapm.2018.04.003. Epub 2018 Apr 28.

PMID:
29747878
5.

High planktonic diversity in mountain lakes contains similar contributions of autotrophic, heterotrophic and parasitic eukaryotic life forms.

Ortiz-Álvarez R, Triadó-Margarit X, Camarero L, Casamayor EO, Catalan J.

Sci Rep. 2018 Mar 13;8(1):4457. doi: 10.1038/s41598-018-22835-3.

6.

Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession.

Ortiz-Álvarez R, Fierer N, de Los Ríos A, Casamayor EO, Barberán A.

ISME J. 2018 Jun;12(7):1658-1667. doi: 10.1038/s41396-018-0076-2. Epub 2018 Feb 20.

PMID:
29463893
7.

Degradation of sulfonamides as a microbial resistance mechanism.

Vila-Costa M, Gioia R, Aceña J, Pérez S, Casamayor EO, Dachs J.

Water Res. 2017 May 15;115:309-317. doi: 10.1016/j.watres.2017.03.007. Epub 2017 Mar 6.

PMID:
28288310
8.

Stream drying drives microbial ammonia oxidation and first-flush nitrate export.

Merbt SN, Proia L, Prosser JI, Martí E, Casamayor EO, von Schiller D.

Ecology. 2016 Sep;97(9):2192-2198. doi: 10.1002/ecy.1486.

PMID:
27859084
9.

Bioaerosols in the Barcelona subway system.

Triadó-Margarit X, Veillette M, Duchaine C, Talbot M, Amato F, Minguillón MC, Martins V, de Miguel E, Casamayor EO, Moreno T.

Indoor Air. 2017 May;27(3):564-575. doi: 10.1111/ina.12343. Epub 2016 Oct 26.

PMID:
27687789
10.

Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.

Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO.

ISME J. 2017 Jan;11(1):201-211. doi: 10.1038/ismej.2016.93. Epub 2016 Jul 8.

11.

The dominant detritus-feeding invertebrate in Arctic peat soils derives its essential amino acids from gut symbionts.

Larsen T, Ventura M, Maraldo K, Triadó-Margarit X, Casamayor EO, Wang YV, Andersen N, O'Brien DM.

J Anim Ecol. 2016 Sep;85(5):1275-85. doi: 10.1111/1365-2656.12563. Epub 2016 Jul 21.

PMID:
27322934
12.

High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes.

Ortiz-Alvarez R, Casamayor EO.

Environ Microbiol Rep. 2016 Apr;8(2):210-7. doi: 10.1111/1758-2229.12370. Epub 2016 Jan 28.

PMID:
26711582
13.

High Bacterial Diversity and Phylogenetic Novelty in Dark Euxinic Freshwaters Analyzed by 16S Tag Community Profiling.

Llorens-Marès T, Triadó-Margarit X, Borrego CM, Dupont CL, Casamayor EO.

Microb Ecol. 2016 Apr;71(3):566-74. doi: 10.1007/s00248-015-0696-2. Epub 2015 Nov 9.

PMID:
26552395
14.

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage.

Fillol M, Auguet JC, Casamayor EO, Borrego CM.

ISME J. 2016 Mar;10(3):665-77. doi: 10.1038/ismej.2015.143. Epub 2015 Aug 18.

15.

High protists diversity in the plankton of sulfurous lakes and lagoons examined by 18s rRNA gene sequence analyses.

Triadó-Margarit X, Casamayor EO.

Environ Microbiol Rep. 2015 Dec;7(6):908-17. doi: 10.1111/1758-2229.12324. Epub 2015 Aug 27.

PMID:
26224512
16.

Microbial food web components, bulk metabolism, and single-cell physiology of piconeuston in surface microlayers of high-altitude lakes.

Sarmento H, Casamayor EO, Auguet JC, Vila-Costa M, Felip M, Camarero L, Gasol JM.

Front Microbiol. 2015 May 5;6:361. doi: 10.3389/fmicb.2015.00361. eCollection 2015.

17.

Influence of edaphic, climatic, and agronomic factors on the composition and abundance of nitrifying microorganisms in the rhizosphere of commercial olive crops.

Caliz J, Montes-Borrego M, Triadó-Margarit X, Metsis M, Landa BB, Casamayor EO.

PLoS One. 2015 May 7;10(5):e0125787. doi: 10.1371/journal.pone.0125787. eCollection 2015.

18.

Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics.

Llorens-Marès T, Yooseph S, Goll J, Hoffman J, Vila-Costa M, Borrego CM, Dupont CL, Casamayor EO.

ISME J. 2015 Jul;9(7):1648-61. doi: 10.1038/ismej.2014.254. Epub 2015 Jan 9.

19.

A phylogenetic perspective on species diversity, β-diversity and biogeography for the microbial world.

Barberán A, Casamayor EO.

Mol Ecol. 2014 Dec;23(23):5868-76. doi: 10.1111/mec.12971. Epub 2014 Nov 10.

PMID:
25327842
20.

Comparison of Artemia-bacteria associations in brines, laboratory cultures and the gut environment: a study based on Chilean hypersaline environments.

Quiroz M, Triadó-Margarit X, Casamayor EO, Gajardo G.

Extremophiles. 2015 Jan;19(1):135-47. doi: 10.1007/s00792-014-0694-1. Epub 2014 Sep 20.

PMID:
25239570
21.

Wastewater treatment plant effluents change abundance and composition of ammonia-oxidizing microorganisms in mediterranean urban stream biofilms.

Merbt SN, Auguet JC, Blesa A, Martí E, Casamayor EO.

Microb Ecol. 2015 Jan;69(1):66-74. doi: 10.1007/s00248-014-0464-8. Epub 2014 Jul 26.

PMID:
25062836
22.

The microbial contribution to macroecology.

Barberán A, Casamayor EO, Fierer N.

Front Microbiol. 2014 May 5;5:203. doi: 10.3389/fmicb.2014.00203. eCollection 2014. Review.

23.

Environmental heterogeneity and microbial inheritance influence sponge-associated bacterial composition of Spongia lamella.

Noyer C, Casamayor EO, Becerro MA.

Microb Ecol. 2014 Oct;68(3):611-20. doi: 10.1007/s00248-014-0428-z. Epub 2014 May 7.

PMID:
24801965
24.

Structure, inter-annual recurrence, and global-scale connectivity of airborne microbial communities.

Barberán A, Henley J, Fierer N, Casamayor EO.

Sci Total Environ. 2014 Jul 15;487:187-95. doi: 10.1016/j.scitotenv.2014.04.030. Epub 2014 May 3.

PMID:
24784743
25.

Nitrogen-cycling genes in epilithic biofilms of oligotrophic high-altitude lakes (central Pyrenees, Spain).

Vila-Costa M, Bartrons M, Catalan J, Casamayor EO.

Microb Ecol. 2014 Jul;68(1):60-9. doi: 10.1007/s00248-014-0417-2. Epub 2014 Apr 18.

PMID:
24743884
26.

Dynamics of bacterial community succession in a salt marsh chronosequence: evidences for temporal niche partitioning.

Dini-Andreote F, de Cássia Pereira e Silva M, Triadó-Margarit X, Casamayor EO, van Elsas JD, Salles JF.

ISME J. 2014 Oct;8(10):1989-2001. doi: 10.1038/ismej.2014.54. Epub 2014 Apr 17.

27.

Environmental controls and composition of anoxygenic photoheterotrophs in ultraoligotrophic high-altitude lakes (Central Pyrenees).

Caliz J, Casamayor EO.

Environ Microbiol Rep. 2014 Apr;6(2):145-51. doi: 10.1111/1758-2229.12142. Epub 2014 Jan 19.

PMID:
24596287
28.

The phylogenetic and ecological context of cultured and whole genome-sequenced planktonic bacteria from the coastal NW Mediterranean Sea.

Lekunberri I, Gasol JM, Acinas SG, Gómez-Consarnau L, Crespo BG, Casamayor EO, Massana R, Pedrós-Alió C, Pinhassi J.

Syst Appl Microbiol. 2014 May;37(3):216-28. doi: 10.1016/j.syapm.2013.11.005. Epub 2014 Jan 23.

PMID:
24462268
29.

Environmental distribution of two widespread uncultured freshwater Euryarchaeota clades unveiled by specific primers and quantitative PCR.

Restrepo-Ortiz CX, Casamayor EO.

Environ Microbiol Rep. 2013 Dec;5(6):861-7. doi: 10.1111/1758-2229.12088. Epub 2013 Aug 18.

PMID:
24249295
30.

Distribution of microbial arsenic reduction, oxidation and extrusion genes along a wide range of environmental arsenic concentrations.

Escudero LV, Casamayor EO, Chong G, Pedrós-Alió C, Demergasso C.

PLoS One. 2013 Oct 31;8(10):e78890. doi: 10.1371/journal.pone.0078890. eCollection 2013.

31.

Targeting spatiotemporal dynamics of planktonic SAGMGC-1 and segregation of ammonia-oxidizing thaumarchaeota ecotypes by newly designed primers and quantitative polymerase chain reaction.

Restrepo-Ortiz CX, Auguet JC, Casamayor EO.

Environ Microbiol. 2014 Mar;16(3):689-700. doi: 10.1111/1462-2920.12191. Epub 2013 Jul 15.

PMID:
23848190
32.

Contrasting activity patterns determined by BrdU incorporation in bacterial ribotypes from the Arctic Ocean in winter.

Galand PE, Alonso-Sáez L, Bertilsson S, Lovejoy C, Casamayor EO.

Front Microbiol. 2013 May 20;4:118. doi: 10.3389/fmicb.2013.00118. eCollection 2013.

33.

Stream hydrological fragmentation drives bacterioplankton community composition.

Fazi S, Vázquez E, Casamayor EO, Amalfitano S, Butturini A.

PLoS One. 2013 May 31;8(5):e64109. doi: 10.1371/journal.pone.0064109. Print 2013.

34.

Microbial biodiversity in saline shallow lakes of the Monegros Desert, Spain.

Casamayor EO, Triadó-Margarit X, Castañeda C.

FEMS Microbiol Ecol. 2013 Sep;85(3):503-18. doi: 10.1111/1574-6941.12139. Epub 2013 May 20.

35.

High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies.

Triadó-Margarit X, Casamayor EO.

FEMS Microbiol Ecol. 2013 Jul;85(1):27-36. doi: 10.1111/1574-6941.12095. Epub 2013 Mar 11.

36.

Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios.

Vila-Costa M, Barberan A, Auguet JC, Sharma S, Moran MA, Casamayor EO.

FEMS Microbiol Ecol. 2013 May;84(2):387-97. doi: 10.1111/1574-6941.12068. Epub 2013 Jan 24.

37.

Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes.

Auguet JC, Casamayor EO.

FEMS Microbiol Ecol. 2013 Apr;84(1):154-64. doi: 10.1111/1574-6941.12047. Epub 2012 Dec 17.

38.

Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics.

Vila-Costa M, Sharma S, Moran MA, Casamayor EO.

Environ Microbiol. 2013 Apr;15(4):1190-203. doi: 10.1111/1462-2920.12033. Epub 2012 Nov 26.

PMID:
23176588
39.

Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers.

Fernàndez-Guerra A, Casamayor EO.

PLoS One. 2012;7(10):e47330. doi: 10.1371/journal.pone.0047330. Epub 2012 Oct 9.

40.

Endosymbiotic calcifying bacteria: a new cue to the origin of calcification in metazoa?

Uriz MJ, Agell G, Blanquer A, Turon X, Casamayor EO.

Evolution. 2012 Oct;66(10):2993-9. doi: 10.1111/j.1558-5646.2012.01676.x. Epub 2012 May 14.

41.

Patterns and architecture of genomic islands in marine bacteria.

Fernández-Gómez B, Fernàndez-Guerra A, Casamayor EO, González JM, Pedrós-Alió C, Acinas SG.

BMC Genomics. 2012 Jul 29;13:347. doi: 10.1186/1471-2164-13-347.

42.

Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain).

Triadó-Margarit X, Casamayor EO.

Environ Microbiol. 2012 Sep;14(9):2445-56. doi: 10.1111/j.1462-2920.2012.02797.x. Epub 2012 Jun 5.

PMID:
22672082
43.

High bacterial diversity in epilithic biofilms of oligotrophic mountain lakes.

Bartrons M, Catalan J, Casamayor EO.

Microb Ecol. 2012 Nov;64(4):860-9. doi: 10.1007/s00248-012-0072-4. Epub 2012 May 24.

PMID:
22622765
44.

Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake.

Auguet JC, Triadó-Margarit X, Nomokonova N, Camarero L, Casamayor EO.

ISME J. 2012 Sep;6(9):1786-97. doi: 10.1038/ismej.2012.33. Epub 2012 Apr 12.

45.

Winter to spring changes in the slush bacterial community composition of a high-mountain lake (Lake Redon, Pyrenees).

Llorens-Marès T, Auguet JC, Casamayor EO.

Environ Microbiol Rep. 2012 Feb;4(1):50-6. doi: 10.1111/j.1758-2229.2011.00278.x. Epub 2011 Aug 19.

PMID:
23757229
46.

Exploration of community traits as ecological markers in microbial metagenomes.

Barberán A, Fernández-Guerra A, Bohannan BJ, Casamayor EO.

Mol Ecol. 2012 Apr;21(8):1909-17. doi: 10.1111/j.1365-294X.2011.05383.x. Epub 2011 Nov 28.

PMID:
22121910
47.

Differential photoinhibition of bacterial and archaeal ammonia oxidation.

Merbt SN, Stahl DA, Casamayor EO, Martí E, Nicol GW, Prosser JI.

FEMS Microbiol Lett. 2012 Feb;327(1):41-6. doi: 10.1111/j.1574-6968.2011.02457.x. Epub 2011 Dec 2.

48.

Using network analysis to explore co-occurrence patterns in soil microbial communities.

Barberán A, Bates ST, Casamayor EO, Fierer N.

ISME J. 2012 Feb;6(2):343-51. doi: 10.1038/ismej.2011.119. Epub 2011 Sep 8. Erratum in: ISME J. 2014 Apr;8(4):952.

49.

A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes.

Garcia JA, Fernández-Guerra A, Casamayor EO.

Mol Phylogenet Evol. 2011 Dec;61(3):650-8. doi: 10.1016/j.ympev.2011.08.011. Epub 2011 Aug 16.

PMID:
21864693
50.

Active bacteria and archaea cells fixing bicarbonate in the dark along the water column of a stratified eutrophic lagoon.

Llirós M, Alonso-Sáez L, Gich F, Plasencia A, Auguet O, Casamayor EO, Borrego CM.

FEMS Microbiol Ecol. 2011 Aug;77(2):370-84. doi: 10.1111/j.1574-6941.2011.01117.x. Epub 2011 May 20.

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