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Items: 1 to 50 of 60

1.

Genetic Alterations That Do or Do Not Occur Naturally; Consequences for Genome Edited Organisms in the Context of Regulatory Oversight.

Custers R, Casacuberta JM, Eriksson D, Sági L, Schiemann J.

Front Bioeng Biotechnol. 2019 Jan 16;6:213. doi: 10.3389/fbioe.2018.00213. eCollection 2018.

2.

European politicians must put greater trust in plant scientists.

Casacuberta JM, Puigdomènech P.

Nature. 2018 Sep;561(7721):33. doi: 10.1038/d41586-018-06129-2. No abstract available.

PMID:
30185966
3.

Proportionate and scientifically sound risk assessment of gene-edited plants.

Casacuberta JM, Puigdomènech P.

EMBO Rep. 2018 Oct;19(10). pii: e46907. doi: 10.15252/embr.201846907. Epub 2018 Sep 5. No abstract available.

PMID:
30185424
4.

The Evolutionary Consequences of Transposon-Related Pericentromer Expansion in Melon.

Morata J, Tormo M, Alexiou KG, Vives C, Ramos-Onsins SE, Garcia-Mas J, Casacuberta JM.

Genome Biol Evol. 2018 Jun 1;10(6):1584-1595. doi: 10.1093/gbe/evy115.

5.

An improved assembly and annotation of the melon (Cucumis melo L.) reference genome.

Ruggieri V, Alexiou KG, Morata J, Argyris J, Pujol M, Yano R, Nonaka S, Ezura H, Latrasse D, Boualem A, Benhamed M, Bendahmane A, Cigliano RA, Sanseverino W, Puigdomènech P, Casacuberta JM, Garcia-Mas J.

Sci Rep. 2018 May 24;8(1):8088. doi: 10.1038/s41598-018-26416-2.

6.

Plant Lineage-Specific Amplification of Transcription Factor Binding Motifs by Miniature Inverted-Repeat Transposable Elements (MITEs).

Morata J, Marín F, Payet J, Casacuberta JM.

Genome Biol Evol. 2018 Apr 1;10(5):1210-1220. doi: 10.1093/gbe/evy073.

7.

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.

Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA.

Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801.

8.

Impact of transposable elements on polyploid plant genomes.

Vicient CM, Casacuberta JM.

Ann Bot. 2017 Aug 1;120(2):195-207. doi: 10.1093/aob/mcx078. Review.

9.

Retrotransposons are specified as DNA replication origins in the gene-poor regions of Arabidopsis heterochromatin.

Vergara Z, Sequeira-Mendes J, Morata J, Peiró R, Hénaff E, Costas C, Casacuberta JM, Gutierrez C.

Nucleic Acids Res. 2017 Aug 21;45(14):8358-8368. doi: 10.1093/nar/gkx524.

10.

Highly efficient gene tagging in the bryophyte Physcomitrella patens using the tobacco (Nicotiana tabacum) Tnt1 retrotransposon.

Vives C, Charlot F, Mhiri C, Contreras B, Daniel J, Epert A, Voytas DF, Grandbastien MA, Nogué F, Casacuberta JM.

New Phytol. 2016 Nov;212(3):759-769. doi: 10.1111/nph.14152. Epub 2016 Aug 22.

11.

Genome engineering and plant breeding: impact on trait discovery and development.

Nogué F, Mara K, Collonnier C, Casacuberta JM.

Plant Cell Rep. 2016 Jul;35(7):1475-86. doi: 10.1007/s00299-016-1993-z. Epub 2016 May 18. Review.

12.

Evolution of Plant Phenotypes, from Genomes to Traits.

Casacuberta JM, Jackson S, Panaud O, Purugganan M, Wendel J.

G3 (Bethesda). 2016 Apr;6(4):775-778. doi: 10.1534/g3.115.025502. Epub 2016 Feb 11. No abstract available.

13.

Jitterbug: somatic and germline transposon insertion detection at single-nucleotide resolution.

Hénaff E, Zapata L, Casacuberta JM, Ossowski S.

BMC Genomics. 2015 Oct 12;16:768. doi: 10.1186/s12864-015-1975-5.

14.

A call for benchmarking transposable element annotation methods.

Hoen DR, Hickey G, Bourque G, Casacuberta J, Cordaux R, Feschotte C, Fiston-Lavier AS, Hua-Van A, Hubley R, Kapusta A, Lerat E, Maumus F, Pollock DD, Quesneville H, Smit A, Wheeler TJ, Bureau TE, Blanchette M.

Mob DNA. 2015 Aug 4;6:13. doi: 10.1186/s13100-015-0044-6. eCollection 2015.

15.

Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome.

Sanseverino W, Hénaff E, Vives C, Pinosio S, Burgos-Paz W, Morgante M, Ramos-Onsins SE, Garcia-Mas J, Casacuberta JM.

Mol Biol Evol. 2015 Oct;32(10):2760-74. doi: 10.1093/molbev/msv152. Epub 2015 Jul 14.

PMID:
26174143
16.

Biotechnological uses of RNAi in plants: risk assessment considerations.

Casacuberta JM, Devos Y, du Jardin P, Ramon M, Vaucheret H, Nogué F.

Trends Biotechnol. 2015 Mar;33(3):145-7. doi: 10.1016/j.tibtech.2014.12.003.

17.

Extensive amplification of the E2F transcription factor binding sites by transposons during evolution of Brassica species.

Hénaff E, Vives C, Desvoyes B, Chaurasia A, Payet J, Gutierrez C, Casacuberta JM.

Plant J. 2014 Mar;77(6):852-62. doi: 10.1111/tpj.12434. Epub 2014 Feb 27.

18.

Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis.

Yang L, Koo DH, Li D, Zhang T, Jiang J, Luan F, Renner SS, Hénaff E, Sanseverino W, Garcia-Mas J, Casacuberta J, Senalik DA, Simon PW, Chen J, Weng Y.

Plant J. 2014 Jan;77(1):16-30. doi: 10.1111/tpj.12355. Epub 2013 Dec 3.

19.

Site-directed nucleases: a paradigm shift in predictable, knowledge-based plant breeding.

Podevin N, Davies HV, Hartung F, Nogué F, Casacuberta JM.

Trends Biotechnol. 2013 Jun;31(6):375-83. doi: 10.1016/j.tibtech.2013.03.004. Epub 2013 Apr 17. Review.

PMID:
23601269
20.

The genome of melon (Cucumis melo L.).

Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, González VM, Hénaff E, Câmara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutiérrez S, Blanca J, Cañizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodríguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorente-Galdos B, Melé M, Yang L, Weng Y, Navarro A, Marques-Bonet T, Aranda MA, Nuez F, Picó B, Gabaldón T, Roma G, Guigó R, Casacuberta JM, Arús P, Puigdomènech P.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11872-7. doi: 10.1073/pnas.1205415109. Epub 2012 Jul 2.

21.

Rapid point-of-care NT-proBNP optimal cut-off point for heart failure diagnosis in primary care.

Verdú JM, Comín-Colet J, Domingo M, Lupón J, Gómez M, Molina L, Casacuberta JM, Muñoz MA, Mena A, Bruguera-Cortada J.

Rev Esp Cardiol (Engl Ed). 2012 Jul;65(7):613-9. doi: 10.1016/j.recesp.2012.01.019. Epub 2012 Apr 26. English, Spanish.

PMID:
22541282
22.

The Tnt1 retrotransposon escapes silencing in tobacco, its natural host.

Hernández-Pinzón I, Cifuentes M, Hénaff E, Santiago N, Espinás ML, Casacuberta JM.

PLoS One. 2012;7(3):e33816. doi: 10.1371/journal.pone.0033816. Epub 2012 Mar 30.

23.

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy.

González VM, Benjak A, Hénaff EM, Mir G, Casacuberta JM, Garcia-Mas J, Puigdomènech P.

BMC Plant Biol. 2010 Nov 12;10:246. doi: 10.1186/1471-2229-10-246.

24.

The frequent transcriptional readthrough of the tobacco Tnt1 retrotransposon and its possible implications for the control of resistance genes.

Hernández-Pinzón I, de Jesús E, Santiago N, Casacuberta JM.

J Mol Evol. 2009 Mar;68(3):269-78. doi: 10.1007/s00239-009-9204-y. Epub 2009 Feb 17.

PMID:
19221683
25.

Recent amplification and impact of MITEs on the genome of grapevine (Vitis vinifera L.).

Benjak A, Boué S, Forneck A, Casacuberta JM.

Genome Biol Evol. 2009 May 20;1:75-84. doi: 10.1093/gbe/evp009.

26.

Genome-wide analysis of the "cut-and-paste" transposons of grapevine.

Benjak A, Forneck A, Casacuberta JM.

PLoS One. 2008 Sep 3;3(9):e3107. doi: 10.1371/journal.pone.0003107.

27.
28.

Plant transposable elements.

Deragon JM, Casacuberta JM, Panaud O.

Genome Dyn. 2008;4:69-82. doi: 10.1159/000126007.

PMID:
18756078
29.

Signalling through kinase-defective domains: the prevalence of atypical receptor-like kinases in plants.

Castells E, Casacuberta JM.

J Exp Bot. 2007;58(13):3503-11. Epub 2007 Oct 20. Review.

PMID:
17951602
30.

The promoter of the TLC1.1 retrotransposon from Solanum chilense is activated by multiple stress-related signaling molecules.

Salazar M, González E, Casaretto JA, Casacuberta JM, Ruiz-Lara S.

Plant Cell Rep. 2007 Oct;26(10):1861-8. Epub 2007 Jun 22.

PMID:
17583815
31.

The proteins encoded by the pogo-like Lemi1 element bind the TIRs and subterminal repeated motifs of the Arabidopsis Emigrant MITE: consequences for the transposition mechanism of MITEs.

Loot C, Santiago N, Sanz A, Casacuberta JM.

Nucleic Acids Res. 2006;34(18):5238-46. Epub 2006 Sep 26. Erratum in: Nucleic Acids Res. 2007;35(10):3518.

32.

Regulation of the kinase activity of the MIK GCK-like MAP4K by alternative splicing.

Castells E, Puigdomènech P, Casacuberta JM.

Plant Mol Biol. 2006 Jul;61(4-5):747-56.

PMID:
16897489
33.

Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae.

Grandbastien MA, Audeon C, Bonnivard E, Casacuberta JM, Chalhoub B, Costa AP, Le QH, Melayah D, Petit M, Poncet C, Tam SM, Van Sluys MA, Mhiri C.

Cytogenet Genome Res. 2005;110(1-4):229-41. Review.

PMID:
16093677
34.

The direct activation of MIK, a germinal center kinase (GCK)-like kinase, by MARK, a maize atypical receptor kinase, suggests a new mechanism for signaling through kinase-dead receptors.

Llompart B, Castells E, Río A, Roca R, Ferrando A, Stiefel V, Puigdomenech P, Casacuberta JM.

J Biol Chem. 2003 Nov 28;278(48):48105-11. Epub 2003 Sep 9.

35.
36.

Identification of Ty1-copia retrotransposons in three ectomycorrhizal basidiomycetes: evolutionary relationships and use as molecular markers.

Díez J, Béguiristain T, Le Tacon F, Casacuberta JM, Tagu D.

Curr Genet. 2003 Apr;43(1):34-44. Epub 2003 Feb 4.

PMID:
12684843
37.

Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana.

Santiago N, Herráiz C, Goñi JR, Messeguer X, Casacuberta JM.

Mol Biol Evol. 2002 Dec;19(12):2285-93.

PMID:
12446819
38.

Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus.

Araujo PG, Casacuberta JM, Costa AP, Hashimoto RY, Grandbastien MA, Van Sluys MA.

Mol Genet Genomics. 2001 Sep;266(1):35-41.

PMID:
11589575
39.
40.

Phosphodiesterases 4D and 7A splice variants in the response of HUVEC cells to TNF-alpha(1).

Miró X, Casacuberta JM, Gutiérrez-López MD, de Landázuri MO, Puigdomènech P.

Biochem Biophys Res Commun. 2000 Aug 2;274(2):415-21.

PMID:
10913353
41.

Benzyl derivatives of 2,1,3-benzo- and benzothieno[3,2-a]thiadiazine 2,2-dioxides: first phosphodiesterase 7 inhibitors.

Martínez A, Castro A, Gil C, Miralpeix M, Segarra V, Doménech T, Beleta J, Palacios JM, Ryder H, Miró X, Bonet C, Casacuberta JM, Azorín F, Piña B, Puigdoménech P.

J Med Chem. 2000 Feb 24;43(4):683-9.

PMID:
10691694
42.
43.
44.
45.

The expression of the tobacco Tnt1 retrotransposon is linked to plant defense responses.

Grandbastien MA, Lucas H, Morel JB, Mhiri C, Vernhettes S, Casacuberta JM.

Genetica. 1997;100(1-3):241-52. Review.

PMID:
9440277
46.

Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution.

Casacuberta JM, Vernhettes S, Audeon C, Grandbastien MA.

Genetica. 1997;100(1-3):109-17. Review.

PMID:
9440263
47.

The promoter of the tobacco Tnt1 retrotransposon is induced by wounding and by abiotic stress.

Mhiri C, Morel JB, Vernhettes S, Casacuberta JM, Lucas H, Grandbastien MA.

Plant Mol Biol. 1997 Jan;33(2):257-66.

PMID:
9037144
48.

Mrs, a new subfamily of Tourist transposable elements.

Río A, Puigdomènech P, Casacuberta JM.

Plant Mol Biol. 1996 Dec;32(6):1221-6.

PMID:
9002625
49.

Sequence variability within the tobacco retrotransposon Tnt1 population.

Casacuberta JM, Vernhettes S, Grandbastien MA.

EMBO J. 1995 Jun 1;14(11):2670-8.

50.

A 20 bp cis-acting element is both necessary and sufficient to mediate elicitor response of a maize PRms gene.

Raventós D, Jensen AB, Rask MB, Casacuberta JM, Mundy J, San Segundo B.

Plant J. 1995 Jan;7(1):147-55.

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