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Items: 24

1.

Genetic tool development in marine protists: emerging model organisms for experimental cell biology.

Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M Jr, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J.

Nat Methods. 2020 Apr 6. doi: 10.1038/s41592-020-0796-x. [Epub ahead of print]

PMID:
32251396
2.

Upregulation of E93 Gene Expression Acts as the Trigger for Metamorphosis Independently of the Threshold Size in the Beetle Tribolium castaneum.

Chafino S, Ureña E, Casanova J, Casacuberta E, Franch-Marro X, Martín D.

Cell Rep. 2019 Apr 23;27(4):1039-1049.e2. doi: 10.1016/j.celrep.2019.03.094.

3.

Differential expression of the adult specifier E93 in the strepsipteran Xenos vesparum Rossi suggests a role in female neoteny.

Chafino S, López-Escardó D, Benelli G, Kovac H, Casacuberta E, Franch-Marro X, Kathirithamby J, Martín D.

Sci Rep. 2018 Sep 21;8(1):14176. doi: 10.1038/s41598-018-32611-y.

4.

Drosophila: Retrotransposons Making up Telomeres.

Casacuberta E.

Viruses. 2017 Jul 19;9(7). pii: E192. doi: 10.3390/v9070192. Review.

5.

NAP-1, Nucleosome assembly protein 1, a histone chaperone involved in Drosophila telomeres.

López-Panadès E, Casacuberta E.

Insect Biochem Mol Biol. 2016 Mar;70:111-5. doi: 10.1016/j.ibmb.2015.11.011. Epub 2015 Dec 30.

PMID:
26742602
6.

Specific Localization of the Drosophila Telomere Transposon Proteins and RNAs, Give Insight in Their Behavior, Control and Telomere Biology in This Organism.

López-Panadès E, Gavis ER, Casacuberta E.

PLoS One. 2015 Jun 12;10(6):e0128573. doi: 10.1371/journal.pone.0128573. eCollection 2015.

7.

The JIL-1 kinase affects telomere expression in the different telomere domains of Drosophila.

Silva-Sousa R, Casacuberta E.

PLoS One. 2013 Nov 14;8(11):e81543. doi: 10.1371/journal.pone.0081543. eCollection 2013.

8.

The Putzig partners DREF, TRF2 and KEN are involved in the regulation of the Drosophila telomere retrotransposons, HeT-A and TART.

Silva-Sousa R, Varela MD, Casacuberta E.

Mob DNA. 2013 Jul 3;4(1):18. doi: 10.1186/1759-8753-4-18.

9.

The impact of transposable elements in environmental adaptation.

Casacuberta E, González J.

Mol Ecol. 2013 Mar;22(6):1503-17. doi: 10.1111/mec.12170. Epub 2013 Jan 7. Review.

PMID:
23293987
10.

The chromosomal proteins JIL-1 and Z4/Putzig regulate the telomeric chromatin in Drosophila melanogaster.

Silva-Sousa R, López-Panadès E, Piñeyro D, Casacuberta E.

PLoS Genet. 2012;8(12):e1003153. doi: 10.1371/journal.pgen.1003153. Epub 2012 Dec 13.

11.

Drosophila telomeres: an example of co-evolution with transposable elements.

Silva-Sousa R, López-Panadѐs E, Casacuberta E.

Genome Dyn. 2012;7:46-67. doi: 10.1159/000337127. Epub 2012 Jun 25. Review.

PMID:
22759813
12.

HeT-A_pi1, a piRNA target sequence in the Drosophila telomeric retrotransposon HeT-A, is extremely conserved across copies and species.

Petit N, Piñeyro D, López-Panadès E, Casacuberta E, Navarro A.

PLoS One. 2012;7(5):e37405. doi: 10.1371/journal.pone.0037405. Epub 2012 May 21.

13.

Transcriptional analysis of the HeT-A retrotransposon in mutant and wild type stocks reveals high sequence variability at Drosophila telomeres and other unusual features.

Piñeyro D, López-Panadès E, Lucena-Pérez M, Casacuberta E.

BMC Genomics. 2011 Nov 23;12:573. doi: 10.1186/1471-2164-12-573.

14.

Intracellular targeting of telomeric retrotransposon Gag proteins of distantly related Drosophila species.

Casacuberta E, Marín FA, Pardue ML.

Proc Natl Acad Sci U S A. 2007 May 15;104(20):8391-6. Epub 2007 May 4.

15.

RNA interference has a role in regulating Drosophila telomeres.

Casacuberta E, Pardue ML.

Genome Biol. 2006;7(5):220. Epub 2006 May 31. Review.

16.

Two retrotransposons maintain telomeres in Drosophila.

Pardue ML, Rashkova S, Casacuberta E, DeBaryshe PG, George JA, Traverse KL.

Chromosome Res. 2005;13(5):443-53. Review.

17.
18.

HeT-A elements in Drosophila virilis: retrotransposon telomeres are conserved across the Drosophila genus.

Casacuberta E, Pardue ML.

Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14091-6. Epub 2003 Nov 12.

19.

Transposon telomeres are widely distributed in the Drosophila genus: TART elements in the virilis group.

Casacuberta E, Pardue ML.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3363-8. Epub 2003 Mar 7.

20.

Coevolution of the telomeric retrotransposons across Drosophila species.

Casacuberta E, Pardue ML.

Genetics. 2002 Jul;161(3):1113-24.

21.

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

Salanoubat M, Lemcke K, Rieger M, Ansorge W, Unseld M, Fartmann B, Valle G, Blöcker H, Perez-Alonso M, Obermaier B, Delseny M, Boutry M, Grivell LA, Mache R, Puigdomènech P, De Simone V, Choisne N, Artiguenave F, Robert C, Brottier P, Wincker P, Cattolico L, Weissenbach J, Saurin W, Quétier F, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Benes V, Wurmbach E, Drzonek H, Erfle H, Jordan N, Bangert S, Wiedelmann R, Kranz H, Voss H, Holland R, Brandt P, Nyakatura G, Vezzi A, D'Angelo M, Pallavicini A, Toppo S, Simionati B, Conrad A, Hornischer K, Kauer G, Löhnert TH, Nordsiek G, Reichelt J, Scharfe M, Schön O, Bargues M, Terol J, Climent J, Navarro P, Collado C, Perez-Perez A, Ottenwälder B, Duchemin D, Cooke R, Laudie M, Berger-Llauro C, Purnelle B, Masuy D, de Haan M, Maarse AC, Alcaraz JP, Cottet A, Casacuberta E, Monfort A, Argiriou A, flores M, Liguori R, Vitale D, Mannhaupt G, Haase D, Schoof H, Rudd S, Zaccaria P, Mewes HW, Mayer KF, Kaul S, Town CD, Koo HL, Tallon LJ, Jenkins J, Rooney T, Rizzo M, Walts A, Utterback T, Fujii CY, Shea TP, Creasy TH, Haas B, Maiti R, Wu D, Peterson J, Van Aken S, Pai G, Militscher J, Sellers P, Gill JE, Feldblyum TV, Preuss D, Lin X, Nierman WC, Salzberg SL, White O, Venter JC, Fraser CM, Kaneko T, Nakamura Y, Sato S, Kato T, Asamizu E, Sasamoto S, Kimura T, Idesawa K, Kawashima K, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Muraki A, Nakayama S, Nakazaki N, Shinpo S, Takeuchi C, Wada T, Watanabe A, Yamada M, Yasuda M, Tabata S; European Union Chromosome 3 Arabidopsis Sequencing Consortium; Institute for Genomic Research; Kazusa DNA Research Institute.

Nature. 2000 Dec 14;408(6814):820-2.

PMID:
11130713
22.

Distribution of microsatellites in relation to coding sequences within the Arabidopsis thaliana genome.

Casacuberta E, Puigdomènech P, Monfort A.

Plant Sci. 2000 Aug 8;157(1):97-104.

PMID:
10940473
23.

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.

Mayer K, Schüller C, Wambutt R, Murphy G, Volckaert G, Pohl T, Düsterhöft A, Stiekema W, Entian KD, Terryn N, Harris B, Ansorge W, Brandt P, Grivell L, Rieger M, Weichselgartner M, de Simone V, Obermaier B, Mache R, Müller M, Kreis M, Delseny M, Puigdomenech P, Watson M, Schmidtheini T, Reichert B, Portatelle D, Perez-Alonso M, Boutry M, Bancroft I, Vos P, Hoheisel J, Zimmermann W, Wedler H, Ridley P, Langham SA, McCullagh B, Bilham L, Robben J, Van der Schueren J, Grymonprez B, Chuang YJ, Vandenbussche F, Braeken M, Weltjens I, Voet M, Bastiaens I, Aert R, Defoor E, Weitzenegger T, Bothe G, Ramsperger U, Hilbert H, Braun M, Holzer E, Brandt A, Peters S, van Staveren M, Dirske W, Mooijman P, Klein Lankhorst R, Rose M, Hauf J, Kötter P, Berneiser S, Hempel S, Feldpausch M, Lamberth S, Van den Daele H, De Keyser A, Buysshaert C, Gielen J, Villarroel R, De Clercq R, Van Montagu M, Rogers J, Cronin A, Quail M, Bray-Allen S, Clark L, Doggett J, Hall S, Kay M, Lennard N, McLay K, Mayes R, Pettett A, Rajandream MA, Lyne M, Benes V, Rechmann S, Borkova D, Blöcker H, Scharfe M, Grimm M, Löhnert TH, Dose S, de Haan M, Maarse A, Schäfer M, Müller-Auer S, Gabel C, Fuchs M, Fartmann B, Granderath K, Dauner D, Herzl A, Neumann S, Argiriou A, Vitale D, Liguori R, Piravandi E, Massenet O, Quigley F, Clabauld G, Mündlein A, Felber R, Schnabl S, Hiller R, Schmidt W, Lecharny A, Aubourg S, Chefdor F, Cooke R, Berger C, Montfort A, Casacuberta E, Gibbons T, Weber N, Vandenbol M, Bargues M, Terol J, Torres A, Perez-Perez A, Purnelle B, Bent E, Johnson S, Tacon D, Jesse T, Heijnen L, Schwarz S, Scholler P, Heber S, Francs P, Bielke C, Frishman D, Haase D, Lemcke K, Mewes HW, Stocker S, Zaccaria P, Bevan M, Wilson RK, de la Bastide M, Habermann K, Parnell L, Dedhia N, Gnoj L, Schutz K, Huang E, Spiegel L, Sehkon M, Murray J, Sheet P, Cordes M, Abu-Threideh J, Stoneking T, Kalicki J, Graves T, Harmon G, Edwards J, Latreille P, Courtney L, Cloud J, Abbott A, Scott K, Johnson D, Minx P, Bentley D, Fulton B, Miller N, Greco T, Kemp K, Kramer J, Fulton L, Mardis E, Dante M, Pepin K, Hillier L, Nelson J, Spieth J, Ryan E, Andrews S, Geisel C, Layman D, Du H, Ali J, Berghoff A, Jones K, Drone K, Cotton M, Joshu C, Antonoiu B, Zidanic M, Strong C, Sun H, Lamar B, Yordan C, Ma P, Zhong J, Preston R, Vil D, Shekher M, Matero A, Shah R, Swaby IK, O'Shaughnessy A, Rodriguez M, Hoffmann J, Till S, Granat S, Shohdy N, Hasegawa A, Hameed A, Lodhi M, Johnson A, Chen E, Marra M, Martienssen R, McCombie WR.

Nature. 1999 Dec 16;402(6763):769-77.

PMID:
10617198
24.

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