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Items: 21

1.

Hot Spots and Their Contribution to the Self-Assembly of the Viral Capsid: In Silico Prediction and Analysis.

Díaz-Valle A, Falcón-González JM, Carrillo-Tripp M.

Int J Mol Sci. 2019 Nov 27;20(23). pii: E5966. doi: 10.3390/ijms20235966.

2.

VIPERdb: A Tool for Virus Research.

Ho PT, Montiel-Garcia DJ, Wong JJ, Carrillo-Tripp M, Brooks CL 3rd, Johnson JE, Reddy VS.

Annu Rev Virol. 2018 Sep 29;5(1):477-488. doi: 10.1146/annurev-virology-092917-043405.

PMID:
30265627
3.

HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data.

Carrillo-Tripp M, Alvarez-Rivera L, Lara-Ramírez OI, Becerra-Toledo FJ, Vega-Ramírez A, Quijas-Valades E, González-Zavala E, González-Vázquez JC, García-Vieyra J, Santoyo-Rivera NB, Chapa-Vergara SV, Meneses-Viveros A.

J Comput Aided Mol Des. 2018 Aug;32(8):869-876. doi: 10.1007/s10822-018-0141-y. Epub 2018 Aug 6.

PMID:
30084079
4.

CapsidMesh: Atomic-detail structured mesh representation of icosahedral viral capsids and the study of their mechanical properties.

Alonzo-Velázquez JL, Botello-Rionda S, Herrera-Guzmán R, Carrillo-Tripp M.

Int J Numer Method Biomed Eng. 2018 Jul;34(7):e2991. doi: 10.1002/cnm.2991. Epub 2018 Apr 22.

PMID:
29603677
5.

Plant-based chimeric HPV-virus-like particles bearing amyloid-β epitopes elicit antibodies able to recognize amyloid plaques in APP-tg mouse and Alzheimer's disease brains.

Gonzalez-Castro R, Acero Galindo G, García Salcedo Y, Uribe Campero L, Vazquez Perez V, Carrillo-Tripp M, Gevorkian G, Gomez Lim MA.

Inflammopharmacology. 2018 Jun;26(3):817-827. doi: 10.1007/s10787-017-0408-2. Epub 2017 Nov 1.

PMID:
29094307
6.

Multi-Phase Solvation Model for Biological Membranes: Molecular Action Mechanism of Amphotericin B.

Falcón-González JM, Jiménez-Domínguez G, Ortega-Blake I, Carrillo-Tripp M.

J Chem Theory Comput. 2017 Jul 11;13(7):3388-3397. doi: 10.1021/acs.jctc.7b00337. Epub 2017 Jun 7.

PMID:
28553993
7.

Evolution of substrate specificity in a retained enzyme driven by gene loss.

Juárez-Vázquez AL, Edirisinghe JN, Verduzco-Castro EA, Michalska K, Wu C, Noda-García L, Babnigg G, Endres M, Medina-Ruíz S, Santoyo-Flores J, Carrillo-Tripp M, Ton-That H, Joachimiak A, Henry CS, Barona-Gómez F.

Elife. 2017 Mar 31;6. pii: e22679. doi: 10.7554/eLife.22679.

8.

An Amphotericin B Derivative Equally Potent to Amphotericin B and with Increased Safety.

Antillón A, de Vries AH, Espinosa-Caballero M, Falcón-González JM, Flores Romero D, González-Damián J, Jiménez-Montejo FE, León-Buitimea A, López-Ortiz M, Magaña R, Marrink SJ, Morales-Nava R, Periole X, Reyes-Esparza J, Rodríguez Lozada J, Santiago-Angelino TM, Vargas González MC, Regla I, Carrillo-Tripp M, Fernández-Zertuche M, Rodríguez-Fragoso L, Ortega-Blake I.

PLoS One. 2016 Sep 28;11(9):e0162171. doi: 10.1371/journal.pone.0162171. eCollection 2016.

9.

Structure based sequence analysis of viral and cellular protein assemblies.

Montiel-García DJ, Mannige RV, Reddy VS, Carrillo-Tripp M.

J Struct Biol. 2016 Dec;196(3):299-308. doi: 10.1016/j.jsb.2016.07.013. Epub 2016 Jul 29.

PMID:
27480508
10.

Porcine circovirus type 2 protective epitope densely carried by chimeric papaya ringspot virus-like particles expressed in Escherichia coli as a cost-effective vaccine manufacture alternative.

Aguilera BE, Chávez-Calvillo G, Elizondo-Quiroga D, Jimenez-García MN, Carrillo-Tripp M, Silva-Rosales L, Hernández-Gutiérrez R, Gutiérrez-Ortega A.

Biotechnol Appl Biochem. 2017 May;64(3):406-414. doi: 10.1002/bab.1491. Epub 2016 Apr 20.

PMID:
26970530
11.

Antagonism or synergism between papaya ringspot virus and papaya mosaic virus in Carica papaya is determined by their order of infection.

Chávez-Calvillo G, Contreras-Paredes CA, Mora-Macias J, Noa-Carrazana JC, Serrano-Rubio AA, Dinkova TD, Carrillo-Tripp M, Silva-Rosales L.

Virology. 2016 Feb;489:179-91. doi: 10.1016/j.virol.2015.11.026. Epub 2016 Jan 5.

12.

Highly efficient strategy for the heterologous expression and purification of soluble Cowpea chlorotic mottle virus capsid protein and in vitro pH-dependent assembly of virus-like particles.

Díaz-Valle A, García-Salcedo YM, Chávez-Calvillo G, Silva-Rosales L, Carrillo-Tripp M.

J Virol Methods. 2015 Dec 1;225:23-9. doi: 10.1016/j.jviromet.2015.08.023. Epub 2015 Sep 2.

PMID:
26342905
13.

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.

Noda-García L, Juárez-Vázquez AL, Ávila-Arcos MC, Verduzco-Castro EA, Montero-Morán G, Gaytán P, Carrillo-Tripp M, Barona-Gómez F.

BMC Evol Biol. 2015 Jun 10;15:107. doi: 10.1186/s12862-015-0378-1.

14.

CapsidMaps: protein-protein interaction pattern discovery platform for the structural analysis of virus capsids using Google Maps.

Carrillo-Tripp M, Montiel-García DJ, Brooks CL 3rd, Reddy VS.

J Struct Biol. 2015 Apr;190(1):47-55. doi: 10.1016/j.jsb.2015.02.003. Epub 2015 Feb 16.

15.

Evolution of substrate specificity in a recipient's enzyme following horizontal gene transfer.

Noda-García L, Camacho-Zarco AR, Medina-Ruíz S, Gaytán P, Carrillo-Tripp M, Fülöp V, Barona-Gómez F.

Mol Biol Evol. 2013 Sep;30(9):2024-34. doi: 10.1093/molbev/mst115. Epub 2013 Jun 25.

PMID:
23800623
16.

Immune response to a potyvirus with exposed amino groups available for chemical conjugation.

Manuel-Cabrera CA, Márquez-Aguirre A, Rodolfo HG, Ortiz-Lazareno PC, Chavez-Calvillo G, Carrillo-Tripp M, Silva-Rosales L, Gutiérrez-Ortega A.

Virol J. 2012 Mar 27;9:75. doi: 10.1186/1743-422X-9-75.

17.

VIPERdb2: an enhanced and web API enabled relational database for structural virology.

Carrillo-Tripp M, Shepherd CM, Borelli IA, Venkataraman S, Lander G, Natarajan P, Johnson JE, Brooks CL 3rd, Reddy VS.

Nucleic Acids Res. 2009 Jan;37(Database issue):D436-42. doi: 10.1093/nar/gkn840. Epub 2008 Nov 3.

18.

A novel method to map and compare protein-protein interactions in spherical viral capsids.

Carrillo-Tripp M, Brooks CL 3rd, Reddy VS.

Proteins. 2008 Nov 15;73(3):644-55. doi: 10.1002/prot.22088.

PMID:
18491385
19.

Ion hydration in nanopores and the molecular basis of selectivity.

Carrillo-Tripp M, San-Román ML, Hernańdez-Cobos J, Saint-Martin H, Ortega-Blake I.

Biophys Chem. 2006 Dec 1;124(3):243-50. Epub 2006 May 3.

PMID:
16765508
20.

Evidence for a mechanism by which omega-3 polyunsaturated lipids may affect membrane protein function.

Carrillo-Tripp M, Feller SE.

Biochemistry. 2005 Aug 2;44(30):10164-9.

PMID:
16042393
21.

Minimalist molecular model for nanopore selectivity.

Carrillo-Tripp M, Saint-Martin H, Ortega-Blake I.

Phys Rev Lett. 2004 Oct 15;93(16):168104. Epub 2004 Oct 14.

PMID:
15525038

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